Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008735

Physical Location & Seq

Genomic Coordinates Forward (+)

46561665 .. 46566897

Gene Structure 5233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00032540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGATTGCTTTACAGGTTCCTCCTGGAATGGAAGAGAGCGGCAAGTCTGAGGCCCACTTGACCTCCCCAGCGGCTTTTGTGGAGGGTGGAATCCAGGAAGCATGTGATGATGCTTGCAGTATATGCCTTGAGGCTTTCTGTGATAGTGATCCTTCTACGTTGACCGGTTGCAAGCATGAATTTCATCTTCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAATGCCCTATGTGCTGGCAGCCCATCAGCTTAAAAGACCCCACCAGCCAAGAACTGTTTGAGGGTGTAGAACGGGAGAGAAGTTATAGGTCAAACCCACCTCGAAGTACTGCAATATTTCATCATCCAACTCTTGGCGATTTTGAACTACAACATTTACCTGTGGGTGTGAATGATGCTGAACTTGAAGAGCGTATAATTCAGCACTTAGCTGCTGCTGCTGCAATGGGTCGGGCACGCCATATTGCCAGAAGGGAAGGCCAGAGAAATAGGTCATCAGGTCAAGGTCGGCCACAATTCCTGGTCTTCTCTACTCATCCTAATGCACCTCCTACCACAGCTTCTTCCTCCCCAGATCAGATGGGAGAGGGTGAACAAGCTCCTTCCGTTGCAGTAACTTTTCCGTCACCTCGTATGAATGCTGGAGAAGAAACTTCTCGAGTGACTACTTCAGGACCTTCTTCTCAATCTGGTCCTGTTTCTGCCTCAGCATCTGGATCTAGTGTCCCTCCATCCAATCAACATGGGTCTTCCATAAGTACTAGGAGGTCTCCTAATCAGTCATCCCCAAGTAGCCAAGATAGAGCTGGGCCATCAGATTTACAGTCATTTTCAGAAAATCTGAAGGCTCGATTCAGTGCAGTGTCAATGAAATACAAAGAGTCGATTTCAAAGAGCACAAGAGGTTGGAAGGAGAGATTGTTCTCTCGCAACAGTTCTGCTTCCGATCTTGGTCCCGAAGTTAAAAGAGAGGTTGATGAAGGGATTGCAACAGTATCACGCATGATGGAGCGTCTGGAAACAAGAGAAAATAATAGAATCAGTGGTGCTTCTGGATCAGATAGTATAGACAATTCAGTTCCCGAATCAGAAAATAGGCGAATATCAGAGAATGGTGGTCAAAATTCCCTGAGTGAGCAGAATAAGCCAGCTACATGTGCTGCAGGCTCTAGTTCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0055046 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

394

Amino Acids

42.41

Weight (kDa)

5.66

Isoelectric Point (pI)

67.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	33 - 79	1.1e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	38 - 79	2.4e-09	Ring finger domain
zf-RING_11	PF17123	39 - 66	6.1e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	39 - 79	2.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	39 - 79	8.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22000 AT5G22000 AT5G22000 AT5G22000
fragaria_vesca	FvH4_3g26760 FvH4_3g26760
malus_domestica	MD03G1160200.v1.1 MD11G1176400.v1.1
prunus_persica	Prupe.6G148500_v2.0.a1 Prupe.6G148500_v2.0.a1 Prupe.6G148500_v2.0.a1
pyrus_communis	pycom03g11270 pycom11g15060
rosa_chinensis	RchiOBHm_Chr5g0049191
rosa_laevigata	RLG00000034598
rosa_multiflora	Rmu_sc0001440.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032540
rosa_rugosa	Rorug05G0245500 Rorug05G0245600.1
rosa_samantha	Rh5AG323500 Rh5BG333900 Rh5DG345600
rosa_wichuraiana	Rw5G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	356
AccBSI	CCGCTC	1 cut(s)	39
AciI	CCGC	2 cut(s)	39, 71
AclWI	GGATC	3 cut(s)	143, 727, 1066
AcoI	YGGCCR	1 cut(s)	512
AcsI	RAATTY	2 cut(s)	179, 1126
AcuI	CTGAAG	3 cut(s)	173, 657, 866
AfaI	GTAC	2 cut(s)	331, 763
AfiI	CCNNNNNNNGG	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	1157
AgeI	ACCGGT	1 cut(s)	164
AgsI	TTSAA	5 cut(s)	203, 368, 410, 894, 1179
AjnI	CCWGG	3 cut(s)	22, 93, 522
AloI	GAACNNNNNNTCC	2 cut(s)	908, 940
AluBI	AGCT	7 cut(s)	219, 252, 434, 563, 602, 809, 1154
AluI	AGCT	7 cut(s)	219, 252, 434, 563, 602, 809, 1154
Alw21I	GWGCWC	1 cut(s)	902
Alw26I	GTCTC	1 cut(s)	777
AlwI	GGATC	3 cut(s)	143, 727, 1066
AlwNI	CAGNNNCTG	1 cut(s)	716
Ama87I	CYCGRG	1 cut(s)	660
AoxI	GGCC	4 cut(s)	51, 481, 512, 812
ApeKI	GCWGC	6 cut(s)	241, 434, 437, 440, 443, 1163
ApoI	RAATTY	2 cut(s)	179, 1126
AsiGI	ACCGGT	1 cut(s)	164
AspS9I	GGNCC	5 cut(s)	52, 677, 695, 812, 956
AsuHPI	GGTGA	2 cut(s)	605, 621
AvaI	CYCGRG	1 cut(s)	660
AvaII	GGWCC	3 cut(s)	677, 695, 956
BaeGI	GKGCMC	1 cut(s)	460
BbsI	GAAGAC	2 cut(s)	520, 744
Bbv12I	GWGCWC	1 cut(s)	902
BbvCI	CCTCAGC	1 cut(s)	709
BbvI	GCAGC	6 cut(s)	253, 421, 424, 427, 430, 1150
BccI	CCATC	5 cut(s)	254, 577, 742, 823, 1003
BciT130I	CCWGG	3 cut(s)	24, 95, 524
BcoDI	GTCTC	1 cut(s)	777
BfaI	CTAG	3 cut(s)	723, 765, 1173
BfmI	CTRYAG	1 cut(s)	1164
BisI	GCNGC	8 cut(s)	40, 72, 242, 435, 438, 441, 444, 1164
BlsI	GCNGC	8 cut(s)	41, 73, 243, 436, 439, 442, 445, 1165
BmcAI	AGTACT	2 cut(s)	331, 763
Bme1390I	CCNGG	3 cut(s)	24, 95, 524
Bme18I	GGWCC	3 cut(s)	677, 695, 956
BmeT110I	CYCGRG	1 cut(s)	660
BmgT120I	GGNCC	5 cut(s)	52, 677, 695, 812, 956
BmiI	GGNNCC	2 cut(s)	18, 958
BmrFI	CCNGG	3 cut(s)	24, 95, 524
BmsI	GCATC	3 cut(s)	100, 388, 722
BpiI	GAAGAC	2 cut(s)	520, 744
BpmI	CTGGAG	1 cut(s)	666
Bpu10I	CCTNAGC	1 cut(s)	709
BpuEI	CTTGAG	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	777
BsaWI	WCCGGW	1 cut(s)	164
BsaXI	ACNNNNNCTCC	4 cut(s)	47, 77, 908, 938
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse118I	RCCGGY	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	453
Bse8I	GATNNNNATC	1 cut(s)	147
BseBI	CCWGG	3 cut(s)	24, 95, 524
BseGI	GGATG	4 cut(s)	346, 538, 734, 785
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	3 cut(s)	39, 723, 1124
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	6 cut(s)	253, 421, 424, 427, 430, 1150
BseYI	CCCAGC	2 cut(s)	67, 809
BsgI	GTGCAG	1 cut(s)	882
BshFI	GGCC	4 cut(s)	53, 483, 514, 814
BshTI	ACCGGT	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	902
BsiHKCI	CYCGRG	1 cut(s)	660
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	2 cut(s)	713, 942
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	1 cut(s)	777
BsmFI	GGGAC	2 cut(s)	713, 942
BsmI	GAATGC	2 cut(s)	195, 646
BsnI	GGCC	4 cut(s)	53, 483, 514, 814
Bso31I	GGTCTC	1 cut(s)	777
BsoBI	CYCGRG	1 cut(s)	660
Bsp1286I	GDGCHC	2 cut(s)	460, 902
Bsp143I	GATC	5 cut(s)	148, 577, 719, 949, 1058
BspACI	CCGC	2 cut(s)	39, 71
BspANI	GGCC	4 cut(s)	53, 483, 514, 814
BspCNI	CTCAG	3 cut(s)	40, 722, 1125
BspLI	GGNNCC	2 cut(s)	18, 958
BspMAI	CTGCAG	1 cut(s)	1168
BspPI	GGATC	3 cut(s)	143, 727, 1066
BspQI	GCTCTTC	1 cut(s)	405
BspTNI	GGTCTC	1 cut(s)	777
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
BssMI	GATC	5 cut(s)	148, 577, 719, 949, 1058
Bst2UI	CCWGG	3 cut(s)	24, 95, 524
Bst4CI	ACNGT	4 cut(s)	279, 828, 938, 997
Bst6I	CTCTTC	2 cut(s)	27, 405
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstC8I	GCNNGC	6 cut(s)	115, 173, 239, 460, 1152, 1168
BstDEI	CTNAG	4 cut(s)	48, 430, 709, 1133
BstF5I	GGATG	4 cut(s)	346, 538, 734, 785
BstKTI	GATC	5 cut(s)	151, 580, 722, 952, 1061
BstMAI	GTCTC	1 cut(s)	777
BstMBI	GATC	5 cut(s)	148, 577, 719, 949, 1058
BstMWI	GCNNNNNNNGC	7 cut(s)	123, 225, 234, 440, 443, 1147, 1160
BstNI	CCWGG	3 cut(s)	24, 95, 524
BstNSI	RCATGY	2 cut(s)	105, 1161
BstSCI	CCNGG	3 cut(s)	22, 93, 522
BstSFI	CTRYAG	1 cut(s)	1164
BstSLI	GKGCMC	1 cut(s)	460
BstV1I	GCAGC	6 cut(s)	253, 421, 424, 427, 430, 1150
BstV2I	GAAGAC	2 cut(s)	520, 744
BstX2I	RGATCY	1 cut(s)	719
BstYI	RGATCY	1 cut(s)	719
BsuRI	GGCC	4 cut(s)	53, 483, 514, 814
BtsCI	GGATG	4 cut(s)	346, 538, 734, 785
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	4 cut(s)	197, 865, 870, 1051
Cac8I	GCNNGC	6 cut(s)	115, 173, 239, 460, 1152, 1168
CaiI	CAGNNNCTG	1 cut(s)	716
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	5 cut(s)	52, 677, 695, 812, 956
CseI	GACGC	1 cut(s)	1004
Csp6I	GTAC	2 cut(s)	330, 762
CspAI	ACCGGT	1 cut(s)	164
CviAII	CATG	5 cut(s)	102, 176, 746, 1006, 1158
CviQI	GTAC	2 cut(s)	330, 762
DdeI	CTNAG	4 cut(s)	48, 430, 709, 1133
DpnI	GATC	5 cut(s)	150, 579, 721, 951, 1060
DpnII	GATC	5 cut(s)	148, 577, 719, 949, 1058
EaeI	YGGCCR	1 cut(s)	512
Eam1104I	CTCTTC	2 cut(s)	27, 405
EarI	CTCTTC	2 cut(s)	27, 405
Eco31I	GGTCTC	1 cut(s)	777
Eco47I	GGWCC	3 cut(s)	677, 695, 956
Eco57I	CTGAAG	3 cut(s)	173, 657, 866
Eco88I	CYCGRG	1 cut(s)	660
EcoO109I	RGGNCCY	1 cut(s)	677
EcoRII	CCWGG	3 cut(s)	22, 93, 522
FaeI	CATG	5 cut(s)	105, 179, 749, 1009, 1161
FaqI	GGGAC	2 cut(s)	713, 942
FatI	CATG	5 cut(s)	101, 175, 745, 1005, 1157
Fnu4HI	GCNGC	8 cut(s)	40, 72, 242, 435, 438, 441, 444, 1164
FokI	GGATG	4 cut(s)	333, 525, 721, 772
Fsp4HI	GCNGC	8 cut(s)	40, 72, 242, 435, 438, 441, 444, 1164
FspBI	CTAG	3 cut(s)	723, 765, 1173
GluI	GCNGC	8 cut(s)	40, 72, 242, 435, 438, 441, 444, 1164
GsaI	CCCAGC	2 cut(s)	71, 813
GsuI	CTGGAG	1 cut(s)	666
HaeIII	GGCC	4 cut(s)	53, 483, 514, 814
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	1 cut(s)	1004
Hin1II	CATG	5 cut(s)	105, 179, 749, 1009, 1161
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	5 cut(s)	90, 855, 884, 1041, 1088
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	2 cut(s)	605, 621
Hpy166II	GTNNAC	2 cut(s)	162, 596
Hpy188III	TCNNGA	8 cut(s)	200, 660, 675, 717, 959, 1019, 1056, 1085
Hpy8I	GTNNAC	2 cut(s)	162, 596
HpyAV	CCTTC	8 cut(s)	162, 468, 473, 615, 690, 841, 907, 977
HpyCH4III	ACNGT	4 cut(s)	279, 828, 938, 997
HpyCH4IV	ACGT	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	7 cut(s)	123, 225, 234, 440, 443, 1147, 1160
HpyF3I	CTNAG	4 cut(s)	48, 430, 709, 1133
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	5 cut(s)	105, 179, 749, 1009, 1161
Kzo9I	GATC	5 cut(s)	148, 577, 719, 949, 1058
LguI	GCTCTTC	1 cut(s)	405
LmnI	GCTCC	3 cut(s)	224, 607, 1012
Lsp1109I	GCAGC	6 cut(s)	253, 421, 424, 427, 430, 1150
LweI	GCATC	3 cut(s)	100, 388, 722
MaeI	CTAG	3 cut(s)	723, 765, 1173
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	3 cut(s)	616, 627, 664
MalI	GATC	5 cut(s)	150, 579, 721, 951, 1060
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	5 cut(s)	148, 577, 719, 949, 1058
MboII	GAAGA	8 cut(s)	44, 179, 422, 520, 558, 662, 675, 744
MflI	RGATCY	1 cut(s)	719
MhlI	GDGCHC	2 cut(s)	460, 902
MluCI	AATT	6 cut(s)	179, 420, 518, 1075, 1126, 1180
MlyI	GAGTC	1 cut(s)	893
MmeI	TCCRAC	2 cut(s)	374, 890
MseI	TTAA	2 cut(s)	254, 966
MslI	CAYNNNNRTG	1 cut(s)	543
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	3 cut(s)	24, 95, 524
Mva1269I	GAATGC	2 cut(s)	195, 646
MvaI	CCWGG	3 cut(s)	24, 95, 524
MwoI	GCNNNNNNNGC	7 cut(s)	123, 225, 234, 440, 443, 1147, 1160
NdeII	GATC	5 cut(s)	148, 577, 719, 949, 1058
NlaIII	CATG	5 cut(s)	105, 179, 749, 1009, 1161
NlaIV	GGNNCC	2 cut(s)	18, 958
NmuCI	GTSAC	2 cut(s)	627, 664
NspI	RCATGY	2 cut(s)	105, 1161
PaeR7I	CTCGAG	1 cut(s)	660
PciI	ACATGT	1 cut(s)	1157
PciSI	GCTCTTC	1 cut(s)	405
PctI	GAATGC	2 cut(s)	195, 646
PfeI	GAWTC	4 cut(s)	90, 855, 1041, 1088
PflMI	CCANNNNNTGG	1 cut(s)	356
PfoI	TCCNGGA	2 cut(s)	22, 93
PinAI	ACCGGT	1 cut(s)	164
PkrI	GCNGC	8 cut(s)	41, 73, 243, 436, 439, 442, 445, 1165
PleI	GAGTC	1 cut(s)	892
PpsI	GAGTC	1 cut(s)	892
PpuMI	RGGWCCY	1 cut(s)	677
PscI	ACATGT	1 cut(s)	1157
Psp5II	RGGWCCY	1 cut(s)	677
Psp6I	CCWGG	3 cut(s)	22, 93, 522
PspFI	CCCAGC	2 cut(s)	67, 809
PspGI	CCWGG	3 cut(s)	22, 93, 522
PspN4I	GGNNCC	2 cut(s)	18, 958
PspPI	GGNCC	5 cut(s)	52, 677, 695, 812, 956
PspPPI	RGGWCCY	1 cut(s)	677
PstI	CTGCAG	1 cut(s)	1168
PstNI	CAGNNNCTG	1 cut(s)	716
PsuI	RGATCY	1 cut(s)	719
RsaI	GTAC	2 cut(s)	331, 763
RsaNI	GTAC	2 cut(s)	330, 762
RseI	CAYNNNNRTG	1 cut(s)	543
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	254, 966
SatI	GCNGC	8 cut(s)	40, 72, 242, 435, 438, 441, 444, 1164
Sau3AI	GATC	5 cut(s)	148, 577, 719, 949, 1058
Sau96I	GGNCC	5 cut(s)	52, 677, 695, 812, 956
ScaI	AGTACT	2 cut(s)	331, 763
SchI	GAGTC	1 cut(s)	893
ScrFI	CCNGG	3 cut(s)	24, 95, 524
SduI	GDGCHC	2 cut(s)	460, 902
SfaNI	GCATC	3 cut(s)	100, 388, 722
SfcI	CTRYAG	1 cut(s)	1164
Sfr274I	CTCGAG	1 cut(s)	660
SinI	GGWCC	3 cut(s)	677, 695, 956
SlaI	CTCGAG	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	543
SmlI	CTYRAG	2 cut(s)	128, 660
SmoI	CTYRAG	2 cut(s)	128, 660
Sse9I	AATT	6 cut(s)	179, 420, 518, 1075, 1126, 1180
SsiI	CCGC	2 cut(s)	39, 71
SspI	AATATT	1 cut(s)	339
SspMI	CTAG	3 cut(s)	723, 765, 1173
StyD4I	CCNGG	3 cut(s)	22, 93, 522
TaaI	ACNGT	4 cut(s)	279, 828, 938, 997
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	4 cut(s)	325, 661, 853, 887
TasI	AATT	6 cut(s)	179, 420, 518, 1075, 1126, 1180
TatI	WGTACW	2 cut(s)	329, 761
TauI	GCSGC	2 cut(s)	42, 74
TfiI	GAWTC	4 cut(s)	90, 855, 1041, 1088
Tru1I	TTAA	2 cut(s)	254, 966
Tru9I	TTAA	2 cut(s)	254, 966
TscAI	CASTG	4 cut(s)	197, 865, 870, 1051
TseFI	GTSAC	2 cut(s)	627, 664
TseI	GCWGC	6 cut(s)	241, 434, 437, 440, 443, 1163
Tsp45I	GTSAC	2 cut(s)	627, 664
TspDTI	ATGAA	6 cut(s)	173, 192, 332, 653, 887, 996
TspGWI	ACGGA	2 cut(s)	598, 615
TspRI	CASTG	4 cut(s)	197, 865, 870, 1051
Van91I	CCANNNNNTGG	1 cut(s)	356
VpaK11BI	GGWCC	3 cut(s)	677, 695, 956
XapI	RAATTY	2 cut(s)	179, 1126
XceI	RCATGY	2 cut(s)	105, 1161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	806
XhoI	CTCGAG	1 cut(s)	660
XspI	CTAG	3 cut(s)	723, 765, 1173
ZrmI	AGTACT	2 cut(s)	331, 763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.