Prupe.6G148500_v2.0.a1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
12512660 .. 12517588
4929 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G148500.1

Sequence Viewer

Length: 1170 bp
ATGGAGGTTCCAGGAATGGAAGAGACCAACAAATCTGAGGCCCACTTGACATCAGCAGCAGCTTTTGTGGAGGGTGGAATCCAGGAAGCCTGTGATGATGCTTGCAGTATATGCCTTGAGGCCTTCTGTGACAGTGATCCTTCTACGCTGACCGGTTGCAAGCATGAATTTCATCTTCAATGCATTCTTGAGTGGTGTCAGAGAAGCTCCCAATGCCCTATGTGCTGGCAACCCATCAGCTTGAAGGATCCCACCAGCCAGGAACTTCTAGAGGGAGTAGAACGGGAGAGAAGTATTAGGTCTAATCCACCTCGAAATACCACAATATTTCATCATCCAACTCTTGGAGATTTTGAATTGCAACATTTACCTGTGGGTGTAAATGATGCTGAACTTGAAGAACGTATAATCCAGCACTTAGCTGCGGCTGCTGCAATGGGTCGGGCACGCCACATTGCCAGAAGGGAGGGCCAAAGGAATAGGTCATCAACTCAAGGGCGCCCACAGTTCCTGGTCTTCTCCACCCATCCTAATGCACATCCTGCTGCTTCTTCCTCCCCTGATCAGATGGGAGAAGGTGAACCAGCTCCTTCAATTTCAGTACCTTTTCCTTCGCCTCCTCTGAATACGGGAGAAGAATCTTATCAAGTGACCACTCCAGTACCTTCTTCGCAATCTGGTCCTGTTTCTGCCTCAGCGGCTGGAACTAGTGTTCCGGCTCCCAATCAACATGGATCTTCCATTAGCAATAGTGGGTCGCCTAGTCAGTCATCCCCGAGTACCCAGGATAGAGCTGGGCCATCAGACTTGCAATCATTTTCAGAATCTCTGAAGACTCGATTTAATGCAGTGTCAATGAGATACAAAGAGTCAATTTCAAAGAGCACAAGAGGTTGGAAGGAGAGATTGTTCTCTCGTAACGCTGCCATGGCAGATCTTGGTTCTGAAGTTAAAAGAGAAGTTAATGCCAGCTTTGCAACTGTATCACGCATGATGGAGCGTCTGGAAACGAGAGACAATAGCAGAATTAATGATCCTTGTGTGTCAAATAGTTTAGATAGTTCGGTTCCTCAATCAGACAATCAGCAGATATCAGAAAATGGTGGTGAAAATTCTTTAAACGACCACAATAAACCAGCTGTGTGCGCTGCAGGTTCTAGCTCAAATTAG

Protein Analysis

390

Amino Acids

41.95

Weight (kDa)

5.35

Isoelectric Point (pI)

62.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1142
AccB1I GGYRCC 1 cut(s) 498
AccB7I CCANNNNNTGG 1 cut(s) 344
AciI CCGC 2 cut(s) 425, 698
AclWI GGATC 5 cut(s) 131, 242, 255, 742, 1028
AcsI RAATTY 2 cut(s) 167, 1111
AcuI CTGAAG 2 cut(s) 851, 966
AcyI GRCGYC 1 cut(s) 499
AfaI GTAC 3 cut(s) 603, 663, 781
AfiI CCNNNNNNNGG 1 cut(s) 344
AgeI ACCGGT 1 cut(s) 152
AgsI TTSAA 6 cut(s) 179, 244, 356, 398, 594, 879
AhlI ACTAGT 1 cut(s) 707
AjnI CCWGG 5 cut(s) 10, 81, 258, 510, 783
AloI GAACNNNNNNTCC 8 cut(s) 393, 425, 696, 697, 728, 729, 893, 925
AluBI AGCT 9 cut(s) 62, 207, 240, 422, 587, 794, 972, 1139, 1161
AluI AGCT 9 cut(s) 62, 207, 240, 422, 587, 794, 972, 1139, 1161
Alw21I GWGCWC 1 cut(s) 887
Alw26I GTCTC 2 cut(s) 17, 1008
AlwI GGATC 5 cut(s) 131, 242, 255, 742, 1028
AlwNI CAGNNNCTG 2 cut(s) 511, 701
Ama87I CYCGRG 1 cut(s) 775
AoxI GGCC 4 cut(s) 39, 120, 469, 797
ApeKI GCWGC 8 cut(s) 56, 59, 422, 428, 431, 545, 923, 1148
ApoI RAATTY 2 cut(s) 167, 1111
AseI ATTAAT 1 cut(s) 1029
AsiGI ACCGGT 1 cut(s) 152
AspLEI GCGC 2 cut(s) 501, 1148
AspS9I GGNCC 4 cut(s) 40, 469, 680, 797
AsuHPI GGTGA 2 cut(s) 590, 1118
AvaI CYCGRG 1 cut(s) 775
AvaII GGWCC 1 cut(s) 680
BaeGI GKGCMC 1 cut(s) 448
BaeI ACNNNNGTAYC 2 cut(s) 645, 678
BamHI GGATCC 1 cut(s) 247
BanI GGYRCC 1 cut(s) 498
BbsI GAAGAC 2 cut(s) 508, 839
Bbv12I GWGCWC 1 cut(s) 887
BbvCI CCTCAGC 1 cut(s) 694
BbvI GCAGC 8 cut(s) 68, 71, 409, 415, 418, 532, 910, 1135
BccI CCATC 5 cut(s) 242, 534, 562, 808, 988
BciT130I CCWGG 5 cut(s) 12, 83, 260, 512, 785
BclI TGATCA 1 cut(s) 562
BcoDI GTCTC 2 cut(s) 17, 1008
BcuI ACTAGT 1 cut(s) 707
BfaI CTAG 4 cut(s) 269, 708, 762, 1158
BfmI CTRYAG 1 cut(s) 1149
BfoI RGCGCY 1 cut(s) 502
BfuAI ACCTGC 1 cut(s) 1142
BglI GCCNNNNNGGC 1 cut(s) 698
BglII AGATCT 1 cut(s) 934
Bme1390I CCNGG 5 cut(s) 12, 83, 260, 512, 785
Bme18I GGWCC 1 cut(s) 680
BmeT110I CYCGRG 1 cut(s) 775
BmgT120I GGNCC 4 cut(s) 40, 469, 680, 797
BmiI GGNNCC 5 cut(s) 9, 249, 500, 720, 1068
BmrFI CCNGG 5 cut(s) 12, 83, 260, 512, 785
BmsI GCATC 2 cut(s) 88, 376
BpiI GAAGAC 2 cut(s) 508, 839
BpmI CTGGAG 1 cut(s) 642
Bpu10I CCTNAGC 1 cut(s) 694
BpuEI CTTGAG 3 cut(s) 137, 209, 477
BsaHI GRCGYC 1 cut(s) 499
BsaI GGTCTC 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 783, 927
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 893, 923
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 659
Bse3DI GCAATG 2 cut(s) 441, 453
BseBI CCWGG 5 cut(s) 12, 83, 260, 512, 785
BseDI CCNNGG 2 cut(s) 783, 927
BseGI GGATG 4 cut(s) 334, 526, 538, 770
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMI GCAATG 2 cut(s) 441, 453
BseMII CTCAG 2 cut(s) 27, 708
BseNI ACTGG 1 cut(s) 659
BseRI GAGGAG 1 cut(s) 609
BseSI GKGCMC 1 cut(s) 448
BseXI GCAGC 8 cut(s) 68, 71, 409, 415, 418, 532, 910, 1135
BseYI CCCAGC 1 cut(s) 794
BshFI GGCC 4 cut(s) 41, 122, 471, 799
BshNI GGYRCC 1 cut(s) 498
BshTI ACCGGT 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 887
BsiHKCI CYCGRG 1 cut(s) 775
BsiSI CCGG 2 cut(s) 153, 716
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 2 cut(s) 17, 1008
BsmI GAATGC 1 cut(s) 183
BsnI GGCC 4 cut(s) 41, 122, 471, 799
Bso31I GGTCTC 1 cut(s) 17
BsoBI CYCGRG 1 cut(s) 775
Bsp1286I GDGCHC 2 cut(s) 448, 887
Bsp143I GATC 6 cut(s) 136, 247, 562, 734, 934, 1033
Bsp19I CCATGG 1 cut(s) 927
BspACI CCGC 2 cut(s) 425, 698
BspANI GGCC 4 cut(s) 41, 122, 471, 799
BspCNI CTCAG 2 cut(s) 28, 707
BspLI GGNNCC 5 cut(s) 9, 249, 500, 720, 1068
BspMAI CTGCAG 1 cut(s) 1153
BspMI ACCTGC 1 cut(s) 1142
BspPI GGATC 5 cut(s) 131, 242, 255, 742, 1028
BspT107I GGYRCC 1 cut(s) 498
BspTNI GGTCTC 1 cut(s) 17
BsrDI GCAATG 2 cut(s) 441, 453
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 659
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 2 cut(s) 783, 927
BssMI GATC 6 cut(s) 136, 247, 562, 734, 934, 1033
BssNI GRCGYC 1 cut(s) 499
BssT1I CCWWGG 1 cut(s) 927
Bst2UI CCWGG 5 cut(s) 12, 83, 260, 512, 785
Bst4CI ACNGT 3 cut(s) 134, 507, 982
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 499
BstAPI GCANNNNNTGC 2 cut(s) 111, 542
BstC8I GCNNGC 5 cut(s) 103, 161, 227, 448, 970
BstDEI CTNAG 3 cut(s) 36, 418, 694
BstDSI CCRYGG 1 cut(s) 927
BstF5I GGATG 4 cut(s) 334, 526, 538, 770
BstH2I RGCGCY 1 cut(s) 502
BstHHI GCGC 2 cut(s) 501, 1148
BstKTI GATC 6 cut(s) 139, 250, 565, 737, 937, 1036
BstMAI GTCTC 2 cut(s) 17, 1008
BstMBI GATC 6 cut(s) 136, 247, 562, 734, 934, 1033
BstNI CCWGG 5 cut(s) 12, 83, 260, 512, 785
BstSCI CCNGG 5 cut(s) 10, 81, 258, 510, 783
BstSFI CTRYAG 1 cut(s) 1149
BstSLI GKGCMC 1 cut(s) 448
BstV1I GCAGC 8 cut(s) 68, 71, 409, 415, 418, 532, 910, 1135
BstV2I GAAGAC 2 cut(s) 508, 839
BstX2I RGATCY 3 cut(s) 247, 734, 934
BstYI RGATCY 3 cut(s) 247, 734, 934
BsuRI GGCC 4 cut(s) 41, 122, 471, 799
BtgI CCRYGG 1 cut(s) 927
BtsCI GGATG 4 cut(s) 334, 526, 538, 770
BtsI GCAGTG 1 cut(s) 855
BtsIMutI CAGTG 2 cut(s) 139, 855
BveI ACCTGC 1 cut(s) 1142
Cac8I GCNNGC 5 cut(s) 103, 161, 227, 448, 970
CaiI CAGNNNCTG 2 cut(s) 511, 701
CfoI GCGC 2 cut(s) 501, 1148
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 4 cut(s) 40, 469, 680, 797
CseI GACGC 1 cut(s) 989
Csp6I GTAC 3 cut(s) 602, 662, 780
CspAI ACCGGT 1 cut(s) 152
CviAII CATG 4 cut(s) 164, 731, 928, 991
CviQI GTAC 3 cut(s) 602, 662, 780
DdeI CTNAG 3 cut(s) 36, 418, 694
DinI GGCGCC 1 cut(s) 500
DpnI GATC 6 cut(s) 138, 249, 564, 736, 936, 1035
DpnII GATC 6 cut(s) 136, 247, 562, 734, 934, 1033
DraI TTTAAA 1 cut(s) 1119
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 927
Eco147I AGGCCT 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 17
Eco32I GATATC 1 cut(s) 1092
Eco47I GGWCC 1 cut(s) 680
Eco57I CTGAAG 2 cut(s) 851, 966
Eco88I CYCGRG 1 cut(s) 775
EcoRII CCWGG 5 cut(s) 10, 81, 258, 510, 783
EcoRV GATATC 1 cut(s) 1092
EcoT14I CCWWGG 1 cut(s) 927
EcoT22I ATGCAT 1 cut(s) 185
EgeI GGCGCC 1 cut(s) 500
EheI GGCGCC 1 cut(s) 500
ErhI CCWWGG 1 cut(s) 927
FaeI CATG 4 cut(s) 167, 734, 931, 994
FaiI YATR 8 cut(s) 110, 112, 165, 221, 407, 732, 929, 992
FatI CATG 4 cut(s) 163, 730, 927, 990
FbaI TGATCA 1 cut(s) 562
FokI GGATG 4 cut(s) 321, 513, 525, 757
FspBI CTAG 4 cut(s) 269, 708, 762, 1158
GlaI GCGC 2 cut(s) 500, 1147
GsaI CCCAGC 1 cut(s) 798
GsuI CTGGAG 1 cut(s) 642
HaeII RGCGCY 1 cut(s) 502
HaeIII GGCC 4 cut(s) 41, 122, 471, 799
HapII CCGG 2 cut(s) 153, 716
HgaI GACGC 1 cut(s) 989
HhaI GCGC 2 cut(s) 501, 1148
Hin1I GRCGYC 1 cut(s) 499
Hin1II CATG 4 cut(s) 167, 734, 931, 994
Hin6I GCGC 2 cut(s) 499, 1146
HinP1I GCGC 2 cut(s) 499, 1146
HinfI GANTC 5 cut(s) 78, 638, 824, 835, 869
HpaII CCGG 2 cut(s) 153, 716
HphI GGTGA 2 cut(s) 590, 1118
Hpy166II GTNNAC 1 cut(s) 581
Hpy188III TCNNGA 3 cut(s) 188, 269, 1004
Hpy8I GTNNAC 1 cut(s) 581
HpyAV CCTTC 9 cut(s) 133, 150, 238, 456, 569, 600, 621, 675, 892
HpyCH4III ACNGT 3 cut(s) 134, 507, 982
HpyCH4IV ACGT 1 cut(s) 403
HpyF3I CTNAG 3 cut(s) 36, 418, 694
HpySE526I ACGT 1 cut(s) 403
Hsp92I GRCGYC 1 cut(s) 499
Hsp92II CATG 4 cut(s) 167, 734, 931, 994
HspAI GCGC 2 cut(s) 499, 1146
KasI GGCGCC 1 cut(s) 498
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 6 cut(s) 136, 247, 562, 734, 934, 1033
LmnI GCTCC 4 cut(s) 212, 592, 724, 997
Lsp1109I GCAGC 8 cut(s) 68, 71, 409, 415, 418, 532, 910, 1135
LweI GCATC 2 cut(s) 88, 376
MaeI CTAG 4 cut(s) 269, 708, 762, 1158
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 3 cut(s) 128, 649, 917
MalI GATC 6 cut(s) 138, 249, 564, 736, 936, 1035
MboI GATC 6 cut(s) 136, 247, 562, 734, 934, 1033
MboII GAAGA 9 cut(s) 32, 167, 410, 508, 543, 647, 660, 729, 844
MflI RGATCY 3 cut(s) 247, 734, 934
MhlI GDGCHC 2 cut(s) 448, 887
MluCI AATT 7 cut(s) 167, 356, 594, 873, 1026, 1111, 1165
Mly113I GGCGCC 1 cut(s) 499
MlyI GAGTC 2 cut(s) 829, 878
MmeI TCCRAC 2 cut(s) 362, 875
Mph1103I ATGCAT 1 cut(s) 185
MseI TTAA 5 cut(s) 843, 951, 963, 1029, 1118
MslI CAYNNNNRTG 1 cut(s) 531
MspA1I CMGCKG 2 cut(s) 698, 1139
MspI CCGG 2 cut(s) 153, 716
MspR9I CCNGG 5 cut(s) 12, 83, 260, 512, 785
Mva1269I GAATGC 1 cut(s) 183
MvaI CCWGG 5 cut(s) 12, 83, 260, 512, 785
NarI GGCGCC 1 cut(s) 499
NcoI CCATGG 1 cut(s) 927
NdeII GATC 6 cut(s) 136, 247, 562, 734, 934, 1033
NlaIII CATG 4 cut(s) 167, 734, 931, 994
NlaIV GGNNCC 5 cut(s) 9, 249, 500, 720, 1068
NmuCI GTSAC 2 cut(s) 128, 649
NsiI ATGCAT 1 cut(s) 185
PceI AGGCCT 1 cut(s) 122
PctI GAATGC 1 cut(s) 183
PfeI GAWTC 3 cut(s) 78, 638, 824
PflMI CCANNNNNTGG 1 cut(s) 344
PfoI TCCNGGA 2 cut(s) 10, 81
PinAI ACCGGT 1 cut(s) 152
PleI GAGTC 2 cut(s) 829, 877
PluTI GGCGCC 1 cut(s) 502
PpsI GAGTC 2 cut(s) 829, 877
PshBI ATTAAT 1 cut(s) 1029
Psp6I CCWGG 5 cut(s) 10, 81, 258, 510, 783
PspFI CCCAGC 1 cut(s) 794
PspGI CCWGG 5 cut(s) 10, 81, 258, 510, 783
PspN4I GGNNCC 5 cut(s) 9, 249, 500, 720, 1068
PspPI GGNCC 4 cut(s) 40, 469, 680, 797
PstI CTGCAG 1 cut(s) 1153
PstNI CAGNNNCTG 2 cut(s) 511, 701
PsuI RGATCY 3 cut(s) 247, 734, 934
PvuII CAGCTG 1 cut(s) 1139
RsaI GTAC 3 cut(s) 603, 663, 781
RsaNI GTAC 3 cut(s) 602, 662, 780
RseI CAYNNNNRTG 1 cut(s) 531
SaqAI TTAA 5 cut(s) 843, 951, 963, 1029, 1118
Sau3AI GATC 6 cut(s) 136, 247, 562, 734, 934, 1033
Sau96I GGNCC 4 cut(s) 40, 469, 680, 797
SchI GAGTC 2 cut(s) 829, 878
ScrFI CCNGG 5 cut(s) 12, 83, 260, 512, 785
SduI GDGCHC 2 cut(s) 448, 887
SfaNI GCATC 2 cut(s) 88, 376
SfcI CTRYAG 1 cut(s) 1149
SfoI GGCGCC 1 cut(s) 500
SinI GGWCC 1 cut(s) 680
SmiMI CAYNNNNRTG 1 cut(s) 531
SmlI CTYRAG 3 cut(s) 116, 188, 492
SmoI CTYRAG 3 cut(s) 116, 188, 492
SpeI ACTAGT 1 cut(s) 707
Sse9I AATT 7 cut(s) 167, 356, 594, 873, 1026, 1111, 1165
SseBI AGGCCT 1 cut(s) 122
SsiI CCGC 2 cut(s) 425, 698
SspDI GGCGCC 1 cut(s) 498
SspI AATATT 1 cut(s) 327
SspMI CTAG 4 cut(s) 269, 708, 762, 1158
StuI AGGCCT 1 cut(s) 122
StyD4I CCNGG 5 cut(s) 10, 81, 258, 510, 783
StyI CCWWGG 1 cut(s) 927
TaaI ACNGT 3 cut(s) 134, 507, 982
TaiI ACGT 1 cut(s) 406
TaqI TCGA 2 cut(s) 313, 838
TasI AATT 7 cut(s) 167, 356, 594, 873, 1026, 1111, 1165
TauI GCSGC 2 cut(s) 428, 701
TfiI GAWTC 3 cut(s) 78, 638, 824
Tru1I TTAA 5 cut(s) 843, 951, 963, 1029, 1118
Tru9I TTAA 5 cut(s) 843, 951, 963, 1029, 1118
TscAI CASTG 2 cut(s) 139, 855
TseFI GTSAC 2 cut(s) 128, 649
TseI GCWGC 8 cut(s) 56, 59, 422, 428, 431, 545, 923, 1148
Tsp45I GTSAC 2 cut(s) 128, 649
TspDTI ATGAA 3 cut(s) 161, 180, 320
TspRI CASTG 2 cut(s) 139, 855
Van91I CCANNNNNTGG 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 680
VspI ATTAAT 1 cut(s) 1029
XapI RAATTY 2 cut(s) 167, 1111
XbaI TCTAGA 1 cut(s) 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 791
XspI CTAG 4 cut(s) 269, 708, 762, 1158
Zsp2I ATGCAT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.