E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G22000 AT5G22000 AT5G22000 AT5G22000 |
| fragaria_vesca | FvH4_3g26760 FvH4_3g26760 |
| malus_domestica | MD03G1160200.v1.1 MD11G1176400.v1.1 |
| prunus_persica | Prupe.6G148500_v2.0.a1 Prupe.6G148500_v2.0.a1 Prupe.6G148500_v2.0.a1 |
| pyrus_communis | pycom03g11270 pycom11g15060 |
| rosa_chinensis | RchiOBHm_Chr5g0049191 |
| rosa_laevigata | RLG00000034598 |
| rosa_multiflora | Rmu_sc0001440.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00032540 |
| rosa_rugosa | Rorug05G0245500 Rorug05G0245600.1 |
| rosa_samantha | Rh5AG323500 Rh5BG333900 Rh5DG345600 |
| rosa_wichuraiana | Rw5G030550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1142 |
| AccB1I | GGYRCC | 1 cut(s) | 498 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 344 |
| AciI | CCGC | 2 cut(s) | 425, 698 |
| AclWI | GGATC | 5 cut(s) | 131, 242, 255, 742, 1028 |
| AcsI | RAATTY | 2 cut(s) | 167, 1111 |
| AcuI | CTGAAG | 2 cut(s) | 851, 966 |
| AcyI | GRCGYC | 1 cut(s) | 499 |
| AfaI | GTAC | 3 cut(s) | 603, 663, 781 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 344 |
| AgeI | ACCGGT | 1 cut(s) | 152 |
| AgsI | TTSAA | 6 cut(s) | 179, 244, 356, 398, 594, 879 |
| AhlI | ACTAGT | 1 cut(s) | 707 |
| AjnI | CCWGG | 5 cut(s) | 10, 81, 258, 510, 783 |
| AloI | GAACNNNNNNTCC | 8 cut(s) | 393, 425, 696, 697, 728, 729, 893, 925 |
| AluBI | AGCT | 9 cut(s) | 62, 207, 240, 422, 587, 794, 972, 1139, 1161 |
| AluI | AGCT | 9 cut(s) | 62, 207, 240, 422, 587, 794, 972, 1139, 1161 |
| Alw21I | GWGCWC | 1 cut(s) | 887 |
| Alw26I | GTCTC | 2 cut(s) | 17, 1008 |
| AlwI | GGATC | 5 cut(s) | 131, 242, 255, 742, 1028 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 511, 701 |
| Ama87I | CYCGRG | 1 cut(s) | 775 |
| AoxI | GGCC | 4 cut(s) | 39, 120, 469, 797 |
| ApeKI | GCWGC | 8 cut(s) | 56, 59, 422, 428, 431, 545, 923, 1148 |
| ApoI | RAATTY | 2 cut(s) | 167, 1111 |
| AseI | ATTAAT | 1 cut(s) | 1029 |
| AsiGI | ACCGGT | 1 cut(s) | 152 |
| AspLEI | GCGC | 2 cut(s) | 501, 1148 |
| AspS9I | GGNCC | 4 cut(s) | 40, 469, 680, 797 |
| AsuHPI | GGTGA | 2 cut(s) | 590, 1118 |
| AvaI | CYCGRG | 1 cut(s) | 775 |
| AvaII | GGWCC | 1 cut(s) | 680 |
| BaeGI | GKGCMC | 1 cut(s) | 448 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 645, 678 |
| BamHI | GGATCC | 1 cut(s) | 247 |
| BanI | GGYRCC | 1 cut(s) | 498 |
| BbsI | GAAGAC | 2 cut(s) | 508, 839 |
| Bbv12I | GWGCWC | 1 cut(s) | 887 |
| BbvCI | CCTCAGC | 1 cut(s) | 694 |
| BbvI | GCAGC | 8 cut(s) | 68, 71, 409, 415, 418, 532, 910, 1135 |
| BccI | CCATC | 5 cut(s) | 242, 534, 562, 808, 988 |
| BciT130I | CCWGG | 5 cut(s) | 12, 83, 260, 512, 785 |
| BclI | TGATCA | 1 cut(s) | 562 |
| BcoDI | GTCTC | 2 cut(s) | 17, 1008 |
| BcuI | ACTAGT | 1 cut(s) | 707 |
| BfaI | CTAG | 4 cut(s) | 269, 708, 762, 1158 |
| BfmI | CTRYAG | 1 cut(s) | 1149 |
| BfoI | RGCGCY | 1 cut(s) | 502 |
| BfuAI | ACCTGC | 1 cut(s) | 1142 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 698 |
| BglII | AGATCT | 1 cut(s) | 934 |
| Bme1390I | CCNGG | 5 cut(s) | 12, 83, 260, 512, 785 |
| Bme18I | GGWCC | 1 cut(s) | 680 |
| BmeT110I | CYCGRG | 1 cut(s) | 775 |
| BmgT120I | GGNCC | 4 cut(s) | 40, 469, 680, 797 |
| BmiI | GGNNCC | 5 cut(s) | 9, 249, 500, 720, 1068 |
| BmrFI | CCNGG | 5 cut(s) | 12, 83, 260, 512, 785 |
| BmsI | GCATC | 2 cut(s) | 88, 376 |
| BpiI | GAAGAC | 2 cut(s) | 508, 839 |
| BpmI | CTGGAG | 1 cut(s) | 642 |
| Bpu10I | CCTNAGC | 1 cut(s) | 694 |
| BpuEI | CTTGAG | 3 cut(s) | 137, 209, 477 |
| BsaHI | GRCGYC | 1 cut(s) | 499 |
| BsaI | GGTCTC | 1 cut(s) | 17 |
| BsaJI | CCNNGG | 2 cut(s) | 783, 927 |
| BsaWI | WCCGGW | 1 cut(s) | 152 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 893, 923 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 344 |
| Bse118I | RCCGGY | 1 cut(s) | 152 |
| Bse1I | ACTGG | 1 cut(s) | 659 |
| Bse3DI | GCAATG | 2 cut(s) | 441, 453 |
| BseBI | CCWGG | 5 cut(s) | 12, 83, 260, 512, 785 |
| BseDI | CCNNGG | 2 cut(s) | 783, 927 |
| BseGI | GGATG | 4 cut(s) | 334, 526, 538, 770 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 344 |
| BseMI | GCAATG | 2 cut(s) | 441, 453 |
| BseMII | CTCAG | 2 cut(s) | 27, 708 |
| BseNI | ACTGG | 1 cut(s) | 659 |
| BseRI | GAGGAG | 1 cut(s) | 609 |
| BseSI | GKGCMC | 1 cut(s) | 448 |
| BseXI | GCAGC | 8 cut(s) | 68, 71, 409, 415, 418, 532, 910, 1135 |
| BseYI | CCCAGC | 1 cut(s) | 794 |
| BshFI | GGCC | 4 cut(s) | 41, 122, 471, 799 |
| BshNI | GGYRCC | 1 cut(s) | 498 |
| BshTI | ACCGGT | 1 cut(s) | 152 |
| BsiHKAI | GWGCWC | 1 cut(s) | 887 |
| BsiHKCI | CYCGRG | 1 cut(s) | 775 |
| BsiSI | CCGG | 2 cut(s) | 153, 716 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 344 |
| BsmAI | GTCTC | 2 cut(s) | 17, 1008 |
| BsmI | GAATGC | 1 cut(s) | 183 |
| BsnI | GGCC | 4 cut(s) | 41, 122, 471, 799 |
| Bso31I | GGTCTC | 1 cut(s) | 17 |
| BsoBI | CYCGRG | 1 cut(s) | 775 |
| Bsp1286I | GDGCHC | 2 cut(s) | 448, 887 |
| Bsp143I | GATC | 6 cut(s) | 136, 247, 562, 734, 934, 1033 |
| Bsp19I | CCATGG | 1 cut(s) | 927 |
| BspACI | CCGC | 2 cut(s) | 425, 698 |
| BspANI | GGCC | 4 cut(s) | 41, 122, 471, 799 |
| BspCNI | CTCAG | 2 cut(s) | 28, 707 |
| BspLI | GGNNCC | 5 cut(s) | 9, 249, 500, 720, 1068 |
| BspMAI | CTGCAG | 1 cut(s) | 1153 |
| BspMI | ACCTGC | 1 cut(s) | 1142 |
| BspPI | GGATC | 5 cut(s) | 131, 242, 255, 742, 1028 |
| BspT107I | GGYRCC | 1 cut(s) | 498 |
| BspTNI | GGTCTC | 1 cut(s) | 17 |
| BsrDI | GCAATG | 2 cut(s) | 441, 453 |
| BsrFI | RCCGGY | 1 cut(s) | 152 |
| BsrI | ACTGG | 1 cut(s) | 659 |
| BssAI | RCCGGY | 1 cut(s) | 152 |
| BssECI | CCNNGG | 2 cut(s) | 783, 927 |
| BssMI | GATC | 6 cut(s) | 136, 247, 562, 734, 934, 1033 |
| BssNI | GRCGYC | 1 cut(s) | 499 |
| BssT1I | CCWWGG | 1 cut(s) | 927 |
| Bst2UI | CCWGG | 5 cut(s) | 12, 83, 260, 512, 785 |
| Bst4CI | ACNGT | 3 cut(s) | 134, 507, 982 |
| Bst6I | CTCTTC | 1 cut(s) | 15 |
| BstACI | GRCGYC | 1 cut(s) | 499 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 111, 542 |
| BstC8I | GCNNGC | 5 cut(s) | 103, 161, 227, 448, 970 |
| BstDEI | CTNAG | 3 cut(s) | 36, 418, 694 |
| BstDSI | CCRYGG | 1 cut(s) | 927 |
| BstF5I | GGATG | 4 cut(s) | 334, 526, 538, 770 |
| BstH2I | RGCGCY | 1 cut(s) | 502 |
| BstHHI | GCGC | 2 cut(s) | 501, 1148 |
| BstKTI | GATC | 6 cut(s) | 139, 250, 565, 737, 937, 1036 |
| BstMAI | GTCTC | 2 cut(s) | 17, 1008 |
| BstMBI | GATC | 6 cut(s) | 136, 247, 562, 734, 934, 1033 |
| BstNI | CCWGG | 5 cut(s) | 12, 83, 260, 512, 785 |
| BstSCI | CCNGG | 5 cut(s) | 10, 81, 258, 510, 783 |
| BstSFI | CTRYAG | 1 cut(s) | 1149 |
| BstSLI | GKGCMC | 1 cut(s) | 448 |
| BstV1I | GCAGC | 8 cut(s) | 68, 71, 409, 415, 418, 532, 910, 1135 |
| BstV2I | GAAGAC | 2 cut(s) | 508, 839 |
| BstX2I | RGATCY | 3 cut(s) | 247, 734, 934 |
| BstYI | RGATCY | 3 cut(s) | 247, 734, 934 |
| BsuRI | GGCC | 4 cut(s) | 41, 122, 471, 799 |
| BtgI | CCRYGG | 1 cut(s) | 927 |
| BtsCI | GGATG | 4 cut(s) | 334, 526, 538, 770 |
| BtsI | GCAGTG | 1 cut(s) | 855 |
| BtsIMutI | CAGTG | 2 cut(s) | 139, 855 |
| BveI | ACCTGC | 1 cut(s) | 1142 |
| Cac8I | GCNNGC | 5 cut(s) | 103, 161, 227, 448, 970 |
| CaiI | CAGNNNCTG | 2 cut(s) | 511, 701 |
| CfoI | GCGC | 2 cut(s) | 501, 1148 |
| Cfr10I | RCCGGY | 1 cut(s) | 152 |
| Cfr13I | GGNCC | 4 cut(s) | 40, 469, 680, 797 |
| CseI | GACGC | 1 cut(s) | 989 |
| Csp6I | GTAC | 3 cut(s) | 602, 662, 780 |
| CspAI | ACCGGT | 1 cut(s) | 152 |
| CviAII | CATG | 4 cut(s) | 164, 731, 928, 991 |
| CviQI | GTAC | 3 cut(s) | 602, 662, 780 |
| DdeI | CTNAG | 3 cut(s) | 36, 418, 694 |
| DinI | GGCGCC | 1 cut(s) | 500 |
| DpnI | GATC | 6 cut(s) | 138, 249, 564, 736, 936, 1035 |
| DpnII | GATC | 6 cut(s) | 136, 247, 562, 734, 934, 1033 |
| DraI | TTTAAA | 1 cut(s) | 1119 |
| Eam1104I | CTCTTC | 1 cut(s) | 15 |
| EarI | CTCTTC | 1 cut(s) | 15 |
| Eco130I | CCWWGG | 1 cut(s) | 927 |
| Eco147I | AGGCCT | 1 cut(s) | 122 |
| Eco31I | GGTCTC | 1 cut(s) | 17 |
| Eco32I | GATATC | 1 cut(s) | 1092 |
| Eco47I | GGWCC | 1 cut(s) | 680 |
| Eco57I | CTGAAG | 2 cut(s) | 851, 966 |
| Eco88I | CYCGRG | 1 cut(s) | 775 |
| EcoRII | CCWGG | 5 cut(s) | 10, 81, 258, 510, 783 |
| EcoRV | GATATC | 1 cut(s) | 1092 |
| EcoT14I | CCWWGG | 1 cut(s) | 927 |
| EcoT22I | ATGCAT | 1 cut(s) | 185 |
| EgeI | GGCGCC | 1 cut(s) | 500 |
| EheI | GGCGCC | 1 cut(s) | 500 |
| ErhI | CCWWGG | 1 cut(s) | 927 |
| FaeI | CATG | 4 cut(s) | 167, 734, 931, 994 |
| FaiI | YATR | 8 cut(s) | 110, 112, 165, 221, 407, 732, 929, 992 |
| FatI | CATG | 4 cut(s) | 163, 730, 927, 990 |
| FbaI | TGATCA | 1 cut(s) | 562 |
| FokI | GGATG | 4 cut(s) | 321, 513, 525, 757 |
| FspBI | CTAG | 4 cut(s) | 269, 708, 762, 1158 |
| GlaI | GCGC | 2 cut(s) | 500, 1147 |
| GsaI | CCCAGC | 1 cut(s) | 798 |
| GsuI | CTGGAG | 1 cut(s) | 642 |
| HaeII | RGCGCY | 1 cut(s) | 502 |
| HaeIII | GGCC | 4 cut(s) | 41, 122, 471, 799 |
| HapII | CCGG | 2 cut(s) | 153, 716 |
| HgaI | GACGC | 1 cut(s) | 989 |
| HhaI | GCGC | 2 cut(s) | 501, 1148 |
| Hin1I | GRCGYC | 1 cut(s) | 499 |
| Hin1II | CATG | 4 cut(s) | 167, 734, 931, 994 |
| Hin6I | GCGC | 2 cut(s) | 499, 1146 |
| HinP1I | GCGC | 2 cut(s) | 499, 1146 |
| HinfI | GANTC | 5 cut(s) | 78, 638, 824, 835, 869 |
| HpaII | CCGG | 2 cut(s) | 153, 716 |
| HphI | GGTGA | 2 cut(s) | 590, 1118 |
| Hpy166II | GTNNAC | 1 cut(s) | 581 |
| Hpy188III | TCNNGA | 3 cut(s) | 188, 269, 1004 |
| Hpy8I | GTNNAC | 1 cut(s) | 581 |
| HpyAV | CCTTC | 9 cut(s) | 133, 150, 238, 456, 569, 600, 621, 675, 892 |
| HpyCH4III | ACNGT | 3 cut(s) | 134, 507, 982 |
| HpyCH4IV | ACGT | 1 cut(s) | 403 |
| HpyF3I | CTNAG | 3 cut(s) | 36, 418, 694 |
| HpySE526I | ACGT | 1 cut(s) | 403 |
| Hsp92I | GRCGYC | 1 cut(s) | 499 |
| Hsp92II | CATG | 4 cut(s) | 167, 734, 931, 994 |
| HspAI | GCGC | 2 cut(s) | 499, 1146 |
| KasI | GGCGCC | 1 cut(s) | 498 |
| Ksp22I | TGATCA | 1 cut(s) | 562 |
| Kzo9I | GATC | 6 cut(s) | 136, 247, 562, 734, 934, 1033 |
| LmnI | GCTCC | 4 cut(s) | 212, 592, 724, 997 |
| Lsp1109I | GCAGC | 8 cut(s) | 68, 71, 409, 415, 418, 532, 910, 1135 |
| LweI | GCATC | 2 cut(s) | 88, 376 |
| MaeI | CTAG | 4 cut(s) | 269, 708, 762, 1158 |
| MaeII | ACGT | 1 cut(s) | 403 |
| MaeIII | GTNAC | 3 cut(s) | 128, 649, 917 |
| MalI | GATC | 6 cut(s) | 138, 249, 564, 736, 936, 1035 |
| MboI | GATC | 6 cut(s) | 136, 247, 562, 734, 934, 1033 |
| MboII | GAAGA | 9 cut(s) | 32, 167, 410, 508, 543, 647, 660, 729, 844 |
| MflI | RGATCY | 3 cut(s) | 247, 734, 934 |
| MhlI | GDGCHC | 2 cut(s) | 448, 887 |
| MluCI | AATT | 7 cut(s) | 167, 356, 594, 873, 1026, 1111, 1165 |
| Mly113I | GGCGCC | 1 cut(s) | 499 |
| MlyI | GAGTC | 2 cut(s) | 829, 878 |
| MmeI | TCCRAC | 2 cut(s) | 362, 875 |
| Mph1103I | ATGCAT | 1 cut(s) | 185 |
| MseI | TTAA | 5 cut(s) | 843, 951, 963, 1029, 1118 |
| MslI | CAYNNNNRTG | 1 cut(s) | 531 |
| MspA1I | CMGCKG | 2 cut(s) | 698, 1139 |
| MspI | CCGG | 2 cut(s) | 153, 716 |
| MspR9I | CCNGG | 5 cut(s) | 12, 83, 260, 512, 785 |
| Mva1269I | GAATGC | 1 cut(s) | 183 |
| MvaI | CCWGG | 5 cut(s) | 12, 83, 260, 512, 785 |
| NarI | GGCGCC | 1 cut(s) | 499 |
| NcoI | CCATGG | 1 cut(s) | 927 |
| NdeII | GATC | 6 cut(s) | 136, 247, 562, 734, 934, 1033 |
| NlaIII | CATG | 4 cut(s) | 167, 734, 931, 994 |
| NlaIV | GGNNCC | 5 cut(s) | 9, 249, 500, 720, 1068 |
| NmuCI | GTSAC | 2 cut(s) | 128, 649 |
| NsiI | ATGCAT | 1 cut(s) | 185 |
| PceI | AGGCCT | 1 cut(s) | 122 |
| PctI | GAATGC | 1 cut(s) | 183 |
| PfeI | GAWTC | 3 cut(s) | 78, 638, 824 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 344 |
| PfoI | TCCNGGA | 2 cut(s) | 10, 81 |
| PinAI | ACCGGT | 1 cut(s) | 152 |
| PleI | GAGTC | 2 cut(s) | 829, 877 |
| PluTI | GGCGCC | 1 cut(s) | 502 |
| PpsI | GAGTC | 2 cut(s) | 829, 877 |
| PshBI | ATTAAT | 1 cut(s) | 1029 |
| Psp6I | CCWGG | 5 cut(s) | 10, 81, 258, 510, 783 |
| PspFI | CCCAGC | 1 cut(s) | 794 |
| PspGI | CCWGG | 5 cut(s) | 10, 81, 258, 510, 783 |
| PspN4I | GGNNCC | 5 cut(s) | 9, 249, 500, 720, 1068 |
| PspPI | GGNCC | 4 cut(s) | 40, 469, 680, 797 |
| PstI | CTGCAG | 1 cut(s) | 1153 |
| PstNI | CAGNNNCTG | 2 cut(s) | 511, 701 |
| PsuI | RGATCY | 3 cut(s) | 247, 734, 934 |
| PvuII | CAGCTG | 1 cut(s) | 1139 |
| RsaI | GTAC | 3 cut(s) | 603, 663, 781 |
| RsaNI | GTAC | 3 cut(s) | 602, 662, 780 |
| RseI | CAYNNNNRTG | 1 cut(s) | 531 |
| SaqAI | TTAA | 5 cut(s) | 843, 951, 963, 1029, 1118 |
| Sau3AI | GATC | 6 cut(s) | 136, 247, 562, 734, 934, 1033 |
| Sau96I | GGNCC | 4 cut(s) | 40, 469, 680, 797 |
| SchI | GAGTC | 2 cut(s) | 829, 878 |
| ScrFI | CCNGG | 5 cut(s) | 12, 83, 260, 512, 785 |
| SduI | GDGCHC | 2 cut(s) | 448, 887 |
| SfaNI | GCATC | 2 cut(s) | 88, 376 |
| SfcI | CTRYAG | 1 cut(s) | 1149 |
| SfoI | GGCGCC | 1 cut(s) | 500 |
| SinI | GGWCC | 1 cut(s) | 680 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 531 |
| SmlI | CTYRAG | 3 cut(s) | 116, 188, 492 |
| SmoI | CTYRAG | 3 cut(s) | 116, 188, 492 |
| SpeI | ACTAGT | 1 cut(s) | 707 |
| Sse9I | AATT | 7 cut(s) | 167, 356, 594, 873, 1026, 1111, 1165 |
| SseBI | AGGCCT | 1 cut(s) | 122 |
| SsiI | CCGC | 2 cut(s) | 425, 698 |
| SspDI | GGCGCC | 1 cut(s) | 498 |
| SspI | AATATT | 1 cut(s) | 327 |
| SspMI | CTAG | 4 cut(s) | 269, 708, 762, 1158 |
| StuI | AGGCCT | 1 cut(s) | 122 |
| StyD4I | CCNGG | 5 cut(s) | 10, 81, 258, 510, 783 |
| StyI | CCWWGG | 1 cut(s) | 927 |
| TaaI | ACNGT | 3 cut(s) | 134, 507, 982 |
| TaiI | ACGT | 1 cut(s) | 406 |
| TaqI | TCGA | 2 cut(s) | 313, 838 |
| TasI | AATT | 7 cut(s) | 167, 356, 594, 873, 1026, 1111, 1165 |
| TauI | GCSGC | 2 cut(s) | 428, 701 |
| TfiI | GAWTC | 3 cut(s) | 78, 638, 824 |
| Tru1I | TTAA | 5 cut(s) | 843, 951, 963, 1029, 1118 |
| Tru9I | TTAA | 5 cut(s) | 843, 951, 963, 1029, 1118 |
| TscAI | CASTG | 2 cut(s) | 139, 855 |
| TseFI | GTSAC | 2 cut(s) | 128, 649 |
| TseI | GCWGC | 8 cut(s) | 56, 59, 422, 428, 431, 545, 923, 1148 |
| Tsp45I | GTSAC | 2 cut(s) | 128, 649 |
| TspDTI | ATGAA | 3 cut(s) | 161, 180, 320 |
| TspRI | CASTG | 2 cut(s) | 139, 855 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 344 |
| VpaK11BI | GGWCC | 1 cut(s) | 680 |
| VspI | ATTAAT | 1 cut(s) | 1029 |
| XapI | RAATTY | 2 cut(s) | 167, 1111 |
| XbaI | TCTAGA | 1 cut(s) | 268 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 791 |
| XspI | CTAG | 4 cut(s) | 269, 708, 762, 1158 |
| Zsp2I | ATGCAT | 1 cut(s) | 185 |