Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008735

Physical Location & Seq

Genomic Coordinates Reverse (-)

19919925 .. 19925386

Gene Structure 5462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26760.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAGGTTCCTCCTGAAATGGAAGAGAGTGGCAAGTCTGAGGCCCACTTGACCTCCGCAGCGGCTTTTGTGGAGGGTGGAATCCAGGAAGCCTGTGATGATGCTTGCAGTATATGCCTTGAGGCTTTTTGTGATAGTGATCCTTCCACGTTGACTGGGTGCAAGCATGAATTTCATCTTCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAGTGCCCGATGTGCTGGCAGCCCATCAGCTTAAAAGATCCGACCAGCCAGGAATTGTTTGAGGGTGTAGAACGGGAGAGAAGTTTTAGGTCTAACCCACCTCGAAGTACTGCAATATTTCATCATCCTACTCTTGGCGATTTTGAACTCCAACATTTACCTGTGGGTGTGAATGATGCTGAACTTGAAGAGCGTATAATTCAGCACTTAGCTGCTGCTGCCGCAATGGGTCGGGCTCGCCATATTGCCAGAAGGGAGGGCCAGAGAAATAGGTCATCAGGTCAAGGTCGCCCACAATTCCTGGTCTTCTCGACTCATCCTCCTGCCACAGCTTCTTCCTCCCCAGATCAGATGAGAGAGGGTGAACAAGCTCCTTCCGTTGCACTTTCTTTTCCGTTGCCTTCTATGAATGCGGGAGAAGAAACTTCTAGAGTGACTACTTTGGGACCTTCCCAACCTGGTCCGGTTTCTGCCTCAGCATCTGGATCTAGTGTCCCCCCATCCAATCAACATGGGTCTTCCATGAGTACTAGGAGGTCTCCTAGTCAGTCATCACCAAGTAGCCATGATCGAGCTGGGCCATCAGATTTACAATCATTTTCAGAAAATCTGAAGGCTCGATTCAATGCAGTGTCAATGAAATACAAAGAGTCAATTTCAAAGAGCACAAGAGGTTGGAAGGAAAGATTGTTCTCTCGCAACAGTTCCGTTTCTGATATTGGTCCTGAAGTTAGAAGAGAGGTTGATGAAGGGATTGCAACAGTATCAAGTATGATGGAGCGTCTGGAAACAAGAGAAAACAATAGAATCAATGGTGCTTCTGAGTCAGATAGTATAGATAGTTCAGTTCGCGAATCAGAAAACAGGCAAATATCAGAAAATGTTGGTCAAAATTCTTTGAGTGAGCAAAATAAGCCAGCTACATGCGCCGCAGGTTCTAGTTCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0055046 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

388

Amino Acids

42.0

Weight (kDa)

5.4

Isoelectric Point (pI)

67.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	30 - 76	1.1e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	35 - 76	2.3e-09	Ring finger domain
zf-RING_11	PF17123	36 - 63	6e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	36 - 76	2.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	36 - 76	8.6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22000 AT5G22000 AT5G22000 AT5G22000
fragaria_vesca	FvH4_3g26760 FvH4_3g26760
malus_domestica	MD03G1160200.v1.1 MD11G1176400.v1.1
prunus_persica	Prupe.6G148500_v2.0.a1 Prupe.6G148500_v2.0.a1 Prupe.6G148500_v2.0.a1
pyrus_communis	pycom03g11270 pycom11g15060
rosa_chinensis	RchiOBHm_Chr5g0049191
rosa_laevigata	RLG00000034598
rosa_multiflora	Rmu_sc0001440.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032540
rosa_rugosa	Rorug05G0245500 Rorug05G0245600.1
rosa_samantha	Rh5AG323500 Rh5BG333900 Rh5DG345600
rosa_wichuraiana	Rw5G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1136
AccII	CGCG	1 cut(s)	1065
AciI	CCGC	5 cut(s)	57, 62, 435, 626, 1143
AclWI	GGATC	3 cut(s)	134, 245, 706
AcsI	RAATTY	2 cut(s)	170, 1105
AcuI	CTGAAG	3 cut(s)	164, 845, 960
AfaI	GTAC	2 cut(s)	322, 742
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	6 cut(s)	194, 359, 401, 838, 873, 1158
AjnI	CCWGG	4 cut(s)	84, 261, 513, 670
AloI	GAACNNNNNNTCC	2 cut(s)	887, 919
AluBI	AGCT	7 cut(s)	210, 243, 425, 545, 584, 788, 1133
AluI	AGCT	7 cut(s)	210, 243, 425, 545, 584, 788, 1133
Alw21I	GWGCWC	1 cut(s)	881
Alw26I	GTCTC	1 cut(s)	756
AlwI	GGATC	3 cut(s)	134, 245, 706
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	3 cut(s)	42, 472, 791
ApeKI	GCWGC	5 cut(s)	59, 232, 425, 428, 431
ApoI	RAATTY	2 cut(s)	170, 1105
AspLEI	GCGC	1 cut(s)	1142
AspS9I	GGNCC	6 cut(s)	43, 472, 659, 674, 791, 935
AsuHPI	GGTGA	2 cut(s)	587, 759
AvaII	GGWCC	3 cut(s)	659, 674, 935
BaeGI	GKGCMC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	451
BbsI	GAAGAC	2 cut(s)	511, 723
Bbv12I	GWGCWC	1 cut(s)	881
BbvCI	CCTCAGC	1 cut(s)	688
BbvI	GCAGC	5 cut(s)	71, 244, 412, 415, 418
BccI	CCATC	4 cut(s)	245, 721, 802, 982
BciT130I	CCWGG	4 cut(s)	86, 263, 515, 672
BcoDI	GTCTC	1 cut(s)	756
BfaI	CTAG	5 cut(s)	642, 702, 744, 756, 1152
BfuAI	ACCTGC	1 cut(s)	1136
BisI	GCNGC	8 cut(s)	60, 63, 233, 426, 429, 432, 435, 1143
BlsI	GCNGC	8 cut(s)	61, 64, 234, 427, 430, 433, 436, 1144
BmcAI	AGTACT	2 cut(s)	322, 742
Bme1390I	CCNGG	4 cut(s)	86, 263, 515, 672
Bme18I	GGWCC	3 cut(s)	659, 674, 935
BmgT120I	GGNCC	6 cut(s)	43, 472, 659, 674, 791, 935
BmiI	GGNNCC	2 cut(s)	9, 660
BmrFI	CCNGG	4 cut(s)	86, 263, 515, 672
BmrI	ACTGGG	2 cut(s)	165, 208
BmsI	GCATC	3 cut(s)	91, 379, 701
BmuI	ACTGGG	2 cut(s)	165, 208
BpiI	GAAGAC	2 cut(s)	511, 723
Bpu10I	CCTNAGC	1 cut(s)	688
BpuEI	CTTGAG	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	756
BsaWI	WCCGGW	1 cut(s)	676
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 517, 547
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse1I	ACTGG	2 cut(s)	160, 214
Bse3DI	GCAATG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	138
BseBI	CCWGG	4 cut(s)	86, 263, 515, 672
BseGI	GGATG	3 cut(s)	337, 529, 713
BseJI	GATNNNNATC	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	3 cut(s)	30, 702, 1026
BseNI	ACTGG	2 cut(s)	160, 214
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	5 cut(s)	71, 244, 412, 415, 418
BseYI	CCCAGC	1 cut(s)	788
Bsh1236I	CGCG	1 cut(s)	1065
BshFI	GGCC	3 cut(s)	44, 474, 793
BsiHKAI	GWGCWC	1 cut(s)	881
BsiSI	CCGG	1 cut(s)	677
BslFI	GGGAC	2 cut(s)	672, 692
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	1 cut(s)	756
BsmFI	GGGAC	2 cut(s)	672, 692
BsmI	GAATGC	2 cut(s)	186, 628
BsnI	GGCC	3 cut(s)	44, 474, 793
Bso31I	GGTCTC	1 cut(s)	756
Bsp1286I	GDGCHC	3 cut(s)	221, 451, 881
Bsp143I	GATC	5 cut(s)	139, 250, 559, 698, 781
Bsp68I	TCGCGA	1 cut(s)	1065
BspACI	CCGC	5 cut(s)	57, 62, 435, 626, 1143
BspANI	GGCC	3 cut(s)	44, 474, 793
BspCNI	CTCAG	3 cut(s)	31, 701, 1027
BspFNI	CGCG	1 cut(s)	1065
BspLI	GGNNCC	2 cut(s)	9, 660
BspMI	ACCTGC	1 cut(s)	1136
BspPI	GGATC	3 cut(s)	134, 245, 706
BspQI	GCTCTTC	1 cut(s)	396
BspTNI	GGTCTC	1 cut(s)	756
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	2 cut(s)	160, 214
BssMI	GATC	5 cut(s)	139, 250, 559, 698, 781
Bst2UI	CCWGG	4 cut(s)	86, 263, 515, 672
Bst4CI	ACNGT	2 cut(s)	917, 976
Bst6I	CTCTTC	3 cut(s)	18, 396, 943
BstAPI	GCANNNNNTGC	1 cut(s)	114
BstC8I	GCNNGC	5 cut(s)	106, 164, 230, 451, 1131
BstDEI	CTNAG	4 cut(s)	39, 421, 688, 1035
BstF5I	GGATG	3 cut(s)	337, 529, 713
BstFNI	CGCG	1 cut(s)	1065
BstHHI	GCGC	1 cut(s)	1142
BstKTI	GATC	5 cut(s)	142, 253, 562, 701, 784
BstMAI	GTCTC	1 cut(s)	756
BstMBI	GATC	5 cut(s)	139, 250, 559, 698, 781
BstMWI	GCNNNNNNNGC	7 cut(s)	114, 216, 225, 431, 434, 1126, 1139
BstNI	CCWGG	4 cut(s)	86, 263, 515, 672
BstNSI	RCATGY	1 cut(s)	1140
BstSCI	CCNGG	4 cut(s)	84, 261, 513, 670
BstSLI	GKGCMC	1 cut(s)	221
BstUI	CGCG	1 cut(s)	1065
BstV1I	GCAGC	5 cut(s)	71, 244, 412, 415, 418
BstV2I	GAAGAC	2 cut(s)	511, 723
BstX2I	RGATCY	2 cut(s)	250, 698
BstYI	RGATCY	2 cut(s)	250, 698
BsuRI	GGCC	3 cut(s)	44, 474, 793
BtsCI	GGATG	3 cut(s)	337, 529, 713
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	3 cut(s)	188, 221, 849
BtuMI	TCGCGA	1 cut(s)	1065
BveI	ACCTGC	1 cut(s)	1136
Cac8I	GCNNGC	5 cut(s)	106, 164, 230, 451, 1131
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	1 cut(s)	1142
Cfr13I	GGNCC	6 cut(s)	43, 472, 659, 674, 791, 935
CseI	GACGC	1 cut(s)	983
CsiI	ACCWGGT	1 cut(s)	670
Csp6I	GTAC	2 cut(s)	321, 741
CviAII	CATG	5 cut(s)	167, 725, 736, 779, 1137
CviQI	GTAC	2 cut(s)	321, 741
DdeI	CTNAG	4 cut(s)	39, 421, 688, 1035
DpnI	GATC	5 cut(s)	141, 252, 561, 700, 783
DpnII	GATC	5 cut(s)	139, 250, 559, 698, 781
Eam1104I	CTCTTC	3 cut(s)	18, 396, 943
EarI	CTCTTC	3 cut(s)	18, 396, 943
Eco24I	GRGCYC	1 cut(s)	451
Eco31I	GGTCTC	1 cut(s)	756
Eco47I	GGWCC	3 cut(s)	659, 674, 935
Eco57I	CTGAAG	3 cut(s)	164, 845, 960
EcoO109I	RGGNCCY	1 cut(s)	659
EcoRII	CCWGG	4 cut(s)	84, 261, 513, 670
EcoT38I	GRGCYC	1 cut(s)	451
FaeI	CATG	5 cut(s)	170, 728, 739, 782, 1140
FaqI	GGGAC	2 cut(s)	672, 692
FatI	CATG	5 cut(s)	166, 724, 735, 778, 1136
FauI	CCCGC	1 cut(s)	619
Fnu4HI	GCNGC	8 cut(s)	60, 63, 233, 426, 429, 432, 435, 1143
FokI	GGATG	3 cut(s)	324, 516, 700
FriOI	GRGCYC	1 cut(s)	451
Fsp4HI	GCNGC	8 cut(s)	60, 63, 233, 426, 429, 432, 435, 1143
FspBI	CTAG	5 cut(s)	642, 702, 744, 756, 1152
GlaI	GCGC	1 cut(s)	1141
GluI	GCNGC	8 cut(s)	60, 63, 233, 426, 429, 432, 435, 1143
GsaI	CCCAGC	1 cut(s)	792
HaeIII	GGCC	3 cut(s)	44, 474, 793
HapII	CCGG	1 cut(s)	677
HgaI	GACGC	1 cut(s)	983
HhaI	GCGC	1 cut(s)	1142
Hin1II	CATG	5 cut(s)	170, 728, 739, 782, 1140
Hin6I	GCGC	1 cut(s)	1140
HinP1I	GCGC	1 cut(s)	1140
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	7 cut(s)	81, 526, 834, 863, 1020, 1037, 1067
HpaII	CCGG	1 cut(s)	677
HphI	GGTGA	2 cut(s)	587, 759
Hpy166II	GTNNAC	2 cut(s)	153, 578
Hpy188III	TCNNGA	8 cut(s)	14, 191, 523, 642, 696, 938, 998, 1064
Hpy8I	GTNNAC	2 cut(s)	153, 578
HpyAV	CCTTC	8 cut(s)	153, 459, 597, 624, 672, 820, 886, 956
HpyCH4III	ACNGT	2 cut(s)	917, 976
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	7 cut(s)	108, 162, 186, 326, 596, 842, 971
HpyF10VI	GCNNNNNNNGC	7 cut(s)	114, 216, 225, 431, 434, 1126, 1139
HpyF3I	CTNAG	4 cut(s)	39, 421, 688, 1035
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	5 cut(s)	170, 728, 739, 782, 1140
HspAI	GCGC	1 cut(s)	1140
Kzo9I	GATC	5 cut(s)	139, 250, 559, 698, 781
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	3 cut(s)	215, 589, 991
Lsp1109I	GCAGC	5 cut(s)	71, 244, 412, 415, 418
LweI	GCATC	3 cut(s)	91, 379, 701
MabI	ACCWGGT	1 cut(s)	670
MaeI	CTAG	5 cut(s)	642, 702, 744, 756, 1152
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	646
MalI	GATC	5 cut(s)	141, 252, 561, 700, 783
MboI	GATC	5 cut(s)	139, 250, 559, 698, 781
MboII	GAAGA	8 cut(s)	35, 170, 413, 511, 540, 644, 723, 960
MflI	RGATCY	2 cut(s)	250, 698
MhlI	GDGCHC	3 cut(s)	221, 451, 881
MluCI	AATT	7 cut(s)	170, 266, 411, 509, 867, 1105, 1159
MlyI	GAGTC	3 cut(s)	520, 872, 1046
MmeI	TCCRAC	3 cut(s)	278, 388, 869
MseI	TTAA	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	677
MspR9I	CCNGG	4 cut(s)	86, 263, 515, 672
Mva1269I	GAATGC	2 cut(s)	186, 628
MvaI	CCWGG	4 cut(s)	86, 263, 515, 672
MvnI	CGCG	1 cut(s)	1065
MwoI	GCNNNNNNNGC	7 cut(s)	114, 216, 225, 431, 434, 1126, 1139
NdeII	GATC	5 cut(s)	139, 250, 559, 698, 781
NlaIII	CATG	5 cut(s)	170, 728, 739, 782, 1140
NlaIV	GGNNCC	2 cut(s)	9, 660
NmuCI	GTSAC	1 cut(s)	646
NruI	TCGCGA	1 cut(s)	1065
NspI	RCATGY	1 cut(s)	1140
PciSI	GCTCTTC	1 cut(s)	396
PctI	GAATGC	2 cut(s)	186, 628
PfeI	GAWTC	4 cut(s)	81, 834, 1020, 1067
PfoI	TCCNGGA	1 cut(s)	84
PkrI	GCNGC	8 cut(s)	61, 64, 234, 427, 430, 433, 436, 1144
PleI	GAGTC	3 cut(s)	520, 871, 1045
PpsI	GAGTC	3 cut(s)	520, 871, 1045
PpuMI	RGGWCCY	1 cut(s)	659
Psp5II	RGGWCCY	1 cut(s)	659
Psp6I	CCWGG	4 cut(s)	84, 261, 513, 670
PspFI	CCCAGC	1 cut(s)	788
PspGI	CCWGG	4 cut(s)	84, 261, 513, 670
PspN4I	GGNNCC	2 cut(s)	9, 660
PspPI	GGNCC	6 cut(s)	43, 472, 659, 674, 791, 935
PspPPI	RGGWCCY	1 cut(s)	659
PsrI	GAACNNNNNNTAC	2 cut(s)	1039, 1071
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	2 cut(s)	250, 698
RruI	TCGCGA	1 cut(s)	1065
RsaI	GTAC	2 cut(s)	322, 742
RsaNI	GTAC	2 cut(s)	321, 741
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	8 cut(s)	60, 63, 233, 426, 429, 432, 435, 1143
Sau3AI	GATC	5 cut(s)	139, 250, 559, 698, 781
Sau96I	GGNCC	6 cut(s)	43, 472, 659, 674, 791, 935
ScaI	AGTACT	2 cut(s)	322, 742
SchI	GAGTC	3 cut(s)	520, 872, 1046
ScrFI	CCNGG	4 cut(s)	86, 263, 515, 672
SduI	GDGCHC	3 cut(s)	221, 451, 881
SexAI	ACCWGGT	1 cut(s)	670
SfaNI	GCATC	3 cut(s)	91, 379, 701
SinI	GGWCC	3 cut(s)	659, 674, 935
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	7 cut(s)	170, 266, 411, 509, 867, 1105, 1159
SsiI	CCGC	5 cut(s)	57, 62, 435, 626, 1143
SspI	AATATT	1 cut(s)	330
SspMI	CTAG	5 cut(s)	642, 702, 744, 756, 1152
StyD4I	CCNGG	4 cut(s)	84, 261, 513, 670
TaaI	ACNGT	2 cut(s)	917, 976
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	4 cut(s)	316, 524, 784, 832
TasI	AATT	7 cut(s)	170, 266, 411, 509, 867, 1105, 1159
TatI	WGTACW	2 cut(s)	320, 740
TauI	GCSGC	3 cut(s)	65, 437, 1145
TfiI	GAWTC	4 cut(s)	81, 834, 1020, 1067
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	3 cut(s)	188, 221, 849
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	5 cut(s)	59, 232, 425, 428, 431
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	6 cut(s)	164, 183, 323, 635, 866, 975
TspGWI	ACGGA	3 cut(s)	580, 597, 910
TspRI	CASTG	3 cut(s)	188, 221, 849
VpaK11BI	GGWCC	3 cut(s)	659, 674, 935
XapI	RAATTY	2 cut(s)	170, 1105
XbaI	TCTAGA	1 cut(s)	641
XceI	RCATGY	1 cut(s)	1140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	785
XspI	CTAG	5 cut(s)	642, 702, 744, 756, 1152
ZrmI	AGTACT	2 cut(s)	322, 742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.