Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008735

Physical Location & Seq

Genomic Coordinates Reverse (-)

48344907 .. 48355043

Gene Structure 10137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG323500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTGCTGGCAGCCCATCAGCTTAAAAGACCCCACCAGCCAAGAACTGTTTGAGGGTGTAGAACGGGAGAGAAGTTATAGGTCAAACCCACCTCGAAGTACTGCAATATTTCATCATCCAACTCTTGGCGATTTTGAACTACAACATTTACCTGTGGGTGTGAATGATGCTGAACTTGAAGAGCGTATAATTCAGCACTTAGCTGCTGCTGCTGCAATGGGTCGGGCACGCCATATTGCCAGAAGGGAGGGCCAGAGAAATAGGTCATCAGGTCAAGGTCGGCCACAATTCCTGGTCTTCTCTACTCATCCTAATGCACCTCCTACCACAGCTTCTTCCTCCCCAGATCAGATGGGAGCGGGTGAACAAGCTTCTTCCGTTGCAGTAACTTTTCCGTCACCTCCTATGAATGCTGGAGAAGAAACTTCTCGAGTGACTACTTCAGGACCTTCTTCTCAATCTGGTCCTGTTTCTGCCTCAGCATCTGGATCTAGTGTCCCTCCATCCAATCAACATGGGTCTTCCATAAGTACTAGGAGGTCTCCTAATCAGTCATCCCCAAGTAGCCAAGATAGAGCTGGGCCATCAGATTTACAGTCATTTTCAGAAAATCTGAAGGCTCGATTCAGTGCAGTGTCAATGAAATACAAAGAGTCGATTTCAAAGAGCACAAGAGGTTGGAAGGAGAGATTGTTCTCTCGCAACAGTTCTGTTTCCGATCTTGGTCCCGAAGTTAAAAGAGAGGTTGATGAAGGGATTGCAACAGTATCACGCATGATGGAGCGTCTGGAAACAAGAGAAAATAATAGAATCAATGGTGCTTCTGGATCAGATGGTATAAACAGTTCAGTTCCCGAATCAGAAAATAGGCGAATATCAGAAAATGGTGGTCAAAATTCTCTGAGTGAGCAGAATAAGCCAGCTACATGTGCTGCTGGCTCTAGTTCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0055046 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

317

Amino Acids

34.01

Weight (kDa)

7.88

Isoelectric Point (pI)

65.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22000 AT5G22000 AT5G22000 AT5G22000
fragaria_vesca	FvH4_3g26760 FvH4_3g26760
malus_domestica	MD03G1160200.v1.1 MD11G1176400.v1.1
prunus_persica	Prupe.6G148500_v2.0.a1 Prupe.6G148500_v2.0.a1 Prupe.6G148500_v2.0.a1
pyrus_communis	pycom03g11270 pycom11g15060
rosa_chinensis	RchiOBHm_Chr5g0049191
rosa_laevigata	RLG00000034598
rosa_multiflora	Rmu_sc0001440.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032540
rosa_rugosa	Rorug05G0245500 Rorug05G0245600.1
rosa_samantha	Rh5AG323500 Rh5BG333900 Rh5DG345600
rosa_wichuraiana	Rw5G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	125
AccBSI	CCGCTC	1 cut(s)	359
AciI	CCGC	1 cut(s)	359
AclWI	GGATC	2 cut(s)	496, 835
AcoI	YGGCCR	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	895
AcuI	CTGAAG	2 cut(s)	426, 635
AfaI	GTAC	2 cut(s)	100, 532
AfiI	CCNNNNNNNGG	1 cut(s)	125
AflIII	ACRYGT	1 cut(s)	926
AgsI	TTSAA	4 cut(s)	137, 179, 663, 948
AjnI	CCWGG	1 cut(s)	291
AloI	GAACNNNNNNTCC	2 cut(s)	677, 709
AluBI	AGCT	6 cut(s)	21, 203, 332, 371, 578, 923
AluI	AGCT	6 cut(s)	21, 203, 332, 371, 578, 923
Alw21I	GWGCWC	1 cut(s)	671
Alw26I	GTCTC	1 cut(s)	546
AlwI	GGATC	2 cut(s)	496, 835
AlwNI	CAGNNNCTG	1 cut(s)	485
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	3 cut(s)	250, 281, 581
ApeKI	GCWGC	6 cut(s)	10, 203, 206, 209, 212, 932
ApoI	RAATTY	1 cut(s)	895
AspS9I	GGNCC	5 cut(s)	250, 446, 464, 581, 725
AsuHPI	GGTGA	2 cut(s)	374, 390
AvaI	CYCGRG	1 cut(s)	429
AvaII	GGWCC	3 cut(s)	446, 464, 725
BaeGI	GKGCMC	1 cut(s)	229
BbsI	GAAGAC	2 cut(s)	289, 513
Bbv12I	GWGCWC	1 cut(s)	671
BbvCI	CCTCAGC	1 cut(s)	478
BbvI	GCAGC	6 cut(s)	22, 190, 193, 196, 199, 919
BccI	CCATC	6 cut(s)	23, 346, 511, 592, 772, 827
BciT130I	CCWGG	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	546
BfaI	CTAG	3 cut(s)	492, 534, 942
BisI	GCNGC	6 cut(s)	11, 204, 207, 210, 213, 933
BlsI	GCNGC	6 cut(s)	12, 205, 208, 211, 214, 934
BmcAI	AGTACT	2 cut(s)	100, 532
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	3 cut(s)	446, 464, 725
BmeT110I	CYCGRG	1 cut(s)	429
BmgT120I	GGNCC	5 cut(s)	250, 446, 464, 581, 725
BmiI	GGNNCC	1 cut(s)	727
BmrFI	CCNGG	1 cut(s)	293
BmsI	GCATC	2 cut(s)	157, 491
BpiI	GAAGAC	2 cut(s)	289, 513
BpmI	CTGGAG	1 cut(s)	435
Bpu10I	CCTNAGC	1 cut(s)	478
BsaI	GGTCTC	1 cut(s)	546
BsaXI	ACNNNNNCTCC	2 cut(s)	677, 707
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	293
BseGI	GGATG	4 cut(s)	115, 307, 503, 554
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	2 cut(s)	492, 893
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	6 cut(s)	22, 190, 193, 196, 199, 919
BseYI	CCCAGC	1 cut(s)	578
BsgI	GTGCAG	1 cut(s)	651
BshFI	GGCC	3 cut(s)	252, 283, 583
BsiHKAI	GWGCWC	1 cut(s)	671
BsiHKCI	CYCGRG	1 cut(s)	429
BslFI	GGGAC	2 cut(s)	482, 711
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	546
BsmFI	GGGAC	2 cut(s)	482, 711
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	3 cut(s)	252, 283, 583
Bso31I	GGTCTC	1 cut(s)	546
BsoBI	CYCGRG	1 cut(s)	429
Bsp1286I	GDGCHC	2 cut(s)	229, 671
Bsp143I	GATC	4 cut(s)	346, 488, 718, 827
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	3 cut(s)	252, 283, 583
BspCNI	CTCAG	2 cut(s)	491, 894
BspLI	GGNNCC	1 cut(s)	727
BspPI	GGATC	2 cut(s)	496, 835
BspQI	GCTCTTC	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	546
BsrBI	CCGCTC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	222
BssMI	GATC	4 cut(s)	346, 488, 718, 827
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	5 cut(s)	48, 597, 707, 766, 845
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	4 cut(s)	8, 229, 921, 937
BstDEI	CTNAG	3 cut(s)	199, 478, 902
BstF5I	GGATG	4 cut(s)	115, 307, 503, 554
BstKTI	GATC	4 cut(s)	349, 491, 721, 830
BstMAI	GTCTC	1 cut(s)	546
BstMBI	GATC	4 cut(s)	346, 488, 718, 827
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 212, 916, 929
BstNI	CCWGG	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	930
BstSCI	CCNGG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	229
BstV1I	GCAGC	6 cut(s)	22, 190, 193, 196, 199, 919
BstV2I	GAAGAC	2 cut(s)	289, 513
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
BsuRI	GGCC	3 cut(s)	252, 283, 583
BtsCI	GGATG	4 cut(s)	115, 307, 503, 554
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	2 cut(s)	634, 639
Cac8I	GCNNGC	4 cut(s)	8, 229, 921, 937
CaiI	CAGNNNCTG	1 cut(s)	485
Cfr13I	GGNCC	5 cut(s)	250, 446, 464, 581, 725
CseI	GACGC	1 cut(s)	773
Csp6I	GTAC	2 cut(s)	99, 531
CviAII	CATG	3 cut(s)	515, 775, 927
CviQI	GTAC	2 cut(s)	99, 531
DdeI	CTNAG	3 cut(s)	199, 478, 902
DpnI	GATC	4 cut(s)	348, 490, 720, 829
DpnII	GATC	4 cut(s)	346, 488, 718, 827
EaeI	YGGCCR	1 cut(s)	281
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	546
Eco47I	GGWCC	3 cut(s)	446, 464, 725
Eco57I	CTGAAG	2 cut(s)	426, 635
Eco88I	CYCGRG	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	291
FaeI	CATG	3 cut(s)	518, 778, 930
FaiI	YATR	9 cut(s)	78, 188, 234, 407, 516, 527, 776, 839, 928
FaqI	GGGAC	2 cut(s)	482, 711
FatI	CATG	3 cut(s)	514, 774, 926
FauI	CCCGC	1 cut(s)	352
Fnu4HI	GCNGC	6 cut(s)	11, 204, 207, 210, 213, 933
FokI	GGATG	4 cut(s)	102, 294, 490, 541
Fsp4HI	GCNGC	6 cut(s)	11, 204, 207, 210, 213, 933
FspBI	CTAG	3 cut(s)	492, 534, 942
GluI	GCNGC	6 cut(s)	11, 204, 207, 210, 213, 933
GsaI	CCCAGC	1 cut(s)	582
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	3 cut(s)	252, 283, 583
HgaI	GACGC	1 cut(s)	773
Hin1II	CATG	3 cut(s)	518, 778, 930
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	4 cut(s)	624, 653, 810, 857
HphI	GGTGA	2 cut(s)	374, 390
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	9 cut(s)	351, 589, 607, 615, 718, 832, 862, 880, 903
Hpy188III	TCNNGA	7 cut(s)	429, 444, 486, 728, 788, 825, 854
Hpy8I	GTNNAC	1 cut(s)	365
HpyAV	CCTTC	5 cut(s)	237, 459, 610, 676, 746
HpyCH4III	ACNGT	5 cut(s)	48, 597, 707, 766, 845
HpyCH4V	TGCA	6 cut(s)	104, 215, 317, 383, 632, 761
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 212, 916, 929
HpyF3I	CTNAG	3 cut(s)	199, 478, 902
Hsp92II	CATG	3 cut(s)	518, 778, 930
Kzo9I	GATC	4 cut(s)	346, 488, 718, 827
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	2 cut(s)	356, 781
Lsp1109I	GCAGC	6 cut(s)	22, 190, 193, 196, 199, 919
LweI	GCATC	2 cut(s)	157, 491
MaeI	CTAG	3 cut(s)	492, 534, 942
MaeIII	GTNAC	3 cut(s)	385, 396, 433
MalI	GATC	4 cut(s)	348, 490, 720, 829
MbiI	CCGCTC	1 cut(s)	359
MboI	GATC	4 cut(s)	346, 488, 718, 827
MboII	GAAGA	7 cut(s)	191, 289, 327, 366, 431, 444, 513
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	2 cut(s)	229, 671
MluCI	AATT	4 cut(s)	189, 287, 895, 949
MlyI	GAGTC	1 cut(s)	662
MmeI	TCCRAC	2 cut(s)	143, 659
MseI	TTAA	2 cut(s)	23, 735
MslI	CAYNNNNRTG	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	293
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	4 cut(s)	209, 212, 916, 929
NdeII	GATC	4 cut(s)	346, 488, 718, 827
NlaIII	CATG	3 cut(s)	518, 778, 930
NlaIV	GGNNCC	1 cut(s)	727
NmuCI	GTSAC	2 cut(s)	396, 433
NspI	RCATGY	1 cut(s)	930
PaeR7I	CTCGAG	1 cut(s)	429
PciI	ACATGT	1 cut(s)	926
PciSI	GCTCTTC	1 cut(s)	174
PctI	GAATGC	1 cut(s)	415
PfeI	GAWTC	3 cut(s)	624, 810, 857
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	6 cut(s)	12, 205, 208, 211, 214, 934
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
PpuMI	RGGWCCY	1 cut(s)	446
PscI	ACATGT	1 cut(s)	926
Psp5II	RGGWCCY	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	727
PspPI	GGNCC	5 cut(s)	250, 446, 464, 581, 725
PspPPI	RGGWCCY	1 cut(s)	446
PsrI	GAACNNNNNNTAC	2 cut(s)	829, 861
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	488
RsaI	GTAC	2 cut(s)	100, 532
RsaNI	GTAC	2 cut(s)	99, 531
RseI	CAYNNNNRTG	1 cut(s)	312
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	23, 735
SatI	GCNGC	6 cut(s)	11, 204, 207, 210, 213, 933
Sau3AI	GATC	4 cut(s)	346, 488, 718, 827
Sau96I	GGNCC	5 cut(s)	250, 446, 464, 581, 725
ScaI	AGTACT	2 cut(s)	100, 532
SchI	GAGTC	1 cut(s)	662
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	2 cut(s)	229, 671
SfaNI	GCATC	2 cut(s)	157, 491
Sfr274I	CTCGAG	1 cut(s)	429
SinI	GGWCC	3 cut(s)	446, 464, 725
SlaI	CTCGAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
Sse9I	AATT	4 cut(s)	189, 287, 895, 949
SsiI	CCGC	1 cut(s)	359
SspI	AATATT	1 cut(s)	108
SspMI	CTAG	3 cut(s)	492, 534, 942
StyD4I	CCNGG	1 cut(s)	291
TaaI	ACNGT	5 cut(s)	48, 597, 707, 766, 845
TaqI	TCGA	4 cut(s)	94, 430, 622, 656
TasI	AATT	4 cut(s)	189, 287, 895, 949
TatI	WGTACW	2 cut(s)	98, 530
TfiI	GAWTC	3 cut(s)	624, 810, 857
Tru1I	TTAA	2 cut(s)	23, 735
Tru9I	TTAA	2 cut(s)	23, 735
TscAI	CASTG	2 cut(s)	634, 639
TseFI	GTSAC	2 cut(s)	396, 433
TseI	GCWGC	6 cut(s)	10, 203, 206, 209, 212, 932
Tsp45I	GTSAC	2 cut(s)	396, 433
TspDTI	ATGAA	4 cut(s)	101, 422, 656, 765
TspGWI	ACGGA	2 cut(s)	367, 384
TspRI	CASTG	2 cut(s)	634, 639
Van91I	CCANNNNNTGG	1 cut(s)	125
VpaK11BI	GGWCC	3 cut(s)	446, 464, 725
XapI	RAATTY	1 cut(s)	895
XceI	RCATGY	1 cut(s)	930
XcmI	CCANNNNNNNNNTGG	1 cut(s)	575
XhoI	CTCGAG	1 cut(s)	429
XspI	CTAG	3 cut(s)	492, 534, 942
ZrmI	AGTACT	2 cut(s)	100, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.