pycom03g11270

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
10945386 .. 10949063
3678 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g11270.6

Sequence Viewer

Length: 1179 bp
ATGGTTCTTAGTGCGCCTCCGGGAAGAGAAGAGACCAACAAATCTGATGCCCACTTGACATCAGCAGCAGCTTTTGTGGAGGGAGGAATCCAGGAAGCCTGTGATGACGCTTGCAGTATATGCCTGGAGGCCTTCTGTGACAACGATCCTTCTACGTTGACCGGTTGCAAGCATGAATTTCATCTTCAGTGCATTCTCGAGTGGTGTCAGCGAAGCTCCCAATGCCCTATGTGCTGGCAACCCATCAGCTTGAAGGATCCCACTGGCCAGGAACTGCTAGAGGCAGTAGAACAAGAGAGAAGTATTAGGTCGAATCCACCTCGAAATACCACAATATTTCATCATCCAACTCTTGGGGATTTTGAGTTGCAGCATTTACCTATGGGTGTAAATGATGCTGAACTTGAAGAGCGTATAATCCAGCACTTAGCTGCTGCTGCCGCAATGGGTCGGGCACGCCACATTGCTAGAAGGGAAGGACAAAGGAATAGGTCATCAGCTCAAGGTCGTCCACAATACCTGGTCTTCTCTACCAATCCTAATGCACCTCAGGCTCATGCTTCTTCTTCCCCTGATCAGATGGGAGAAGGTGAACCATCTCCTTCAATTGCAGTAACTTTCCCGTCGCCTCCTATGAATAGGGAAGAATCTTCTCAAGTAACCACTCCTGTACATTCGTCACAATCTGGTTCTGTTTCTGCATCAGCATCTGGATCTAGTAATTCGGCTCTGAATCAACAAGGGTCTTCCATGAGCAATAGGAGGTCGCCTAGTCAGTCATCCCCAAGTACCCAAGATAGAGCTGGACCATCAGACTTGCAATCCTTTTCAGAATCTCTGAAATCTCGATTTAATGCAGTATCAACGAGATACAAAGAGTCAATTTCAAAGAGCACAAGAGGTTGGAAGGAGAGGTTGTTCTCTCGCAATGCTTCCATGGCAGATCTTGGTTCAGAAGTTAAAAGAGAGGTTAATGCGGGGATCGCAACTGTATCACGCATGATGGAGCGTCTGGAAACAAAAGACGATAACACAATTAATGAGGCTTCTGTGTCAAATAGTTTAGACAGTCCGGTTTCTGAATCAGACAATCGGCGGATATCAGAAAGGGGTGGTGAAAATTCTGTAAATGACCACAATAGACTGGCTGCCTGTACTGCAGGTTCTAGTTCAAATTAG

Protein Analysis

393

Amino Acids

42.44

Weight (kDa)

5.62

Isoelectric Point (pI)

67.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1151
AccB7I CCANNNNNTGG 1 cut(s) 353
AciI CCGC 3 cut(s) 441, 977, 1096
AclWI GGATC 5 cut(s) 140, 251, 264, 721, 989
AcoI YGGCCR 1 cut(s) 265
AcsI RAATTY 2 cut(s) 176, 1120
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 3 cut(s) 672, 790, 1156
AfiI CCNNNNNNNGG 1 cut(s) 353
AgeI ACCGGT 1 cut(s) 161
AgsI TTSAA 5 cut(s) 253, 407, 606, 888, 1173
AjnI CCWGG 4 cut(s) 90, 123, 267, 519
AloI GAACNNNNNNTCC 2 cut(s) 902, 934
AluBI AGCT 6 cut(s) 71, 216, 249, 431, 500, 803
AluI AGCT 6 cut(s) 71, 216, 249, 431, 500, 803
Alw21I GWGCWC 1 cut(s) 896
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 5 cut(s) 140, 251, 264, 721, 989
AlwNI CAGNNNCTG 2 cut(s) 274, 710
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 2 cut(s) 129, 265
ApeKI GCWGC 7 cut(s) 65, 68, 370, 431, 434, 437, 1148
ApoI RAATTY 2 cut(s) 176, 1120
AseI ATTAAT 1 cut(s) 1038
AsiGI ACCGGT 1 cut(s) 161
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 806
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 2 cut(s) 602, 1127
AvaI CYCGRG 1 cut(s) 197
AvaII GGWCC 1 cut(s) 806
AxyI CCTNAGG 1 cut(s) 549
BaeGI GKGCMC 1 cut(s) 457
BalI TGGCCA 1 cut(s) 267
BamHI GGATCC 1 cut(s) 256
BbsI GAAGAC 2 cut(s) 517, 738
Bbv12I GWGCWC 1 cut(s) 896
BbvI GCAGC 7 cut(s) 77, 80, 382, 418, 421, 424, 1135
BccI CCATC 5 cut(s) 251, 574, 604, 817, 997
BciT130I CCWGG 4 cut(s) 92, 125, 269, 521
BclI TGATCA 1 cut(s) 574
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 5 cut(s) 278, 468, 717, 771, 1167
BfmI CTRYAG 1 cut(s) 1158
BfuAI ACCTGC 1 cut(s) 1151
BglII AGATCT 1 cut(s) 943
BisI GCNGC 8 cut(s) 66, 69, 371, 432, 435, 438, 441, 1149
BlsI GCNGC 8 cut(s) 67, 70, 372, 433, 436, 439, 442, 1150
Bme1390I CCNGG 5 cut(s) 21, 92, 125, 269, 521
Bme18I GGWCC 1 cut(s) 806
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 806
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 5 cut(s) 21, 92, 125, 269, 521
BmsI GCATC 4 cut(s) 37, 385, 710, 716
BpiI GAAGAC 2 cut(s) 517, 738
BpmI CTGGAG 1 cut(s) 146
BpuEI CTTGAG 2 cut(s) 486, 639
BpuMI CCSGG 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 936
BsaWI WCCGGW 2 cut(s) 161, 1072
BsaXI ACNNNNNCTCC 2 cut(s) 902, 932
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 268, 1149
Bse21I CCTNAGG 1 cut(s) 549
Bse3DI GCAATG 3 cut(s) 450, 462, 934
BseBI CCWGG 4 cut(s) 92, 125, 269, 521
BseDI CCNNGG 1 cut(s) 936
BseGI GGATG 2 cut(s) 343, 779
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMI GCAATG 3 cut(s) 450, 462, 934
BseMII CTCAG 1 cut(s) 563
BseNI ACTGG 2 cut(s) 268, 1149
BseSI GKGCMC 1 cut(s) 457
BseXI GCAGC 7 cut(s) 77, 80, 382, 418, 421, 424, 1135
BshFI GGCC 2 cut(s) 131, 267
BshTI ACCGGT 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 896
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 3 cut(s) 20, 162, 1073
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 192
BsnI GGCC 2 cut(s) 131, 267
Bso31I GGTCTC 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 457, 896
Bsp1407I TGTACA 1 cut(s) 670
Bsp143I GATC 6 cut(s) 145, 256, 574, 713, 943, 981
Bsp19I CCATGG 1 cut(s) 936
BspACI CCGC 3 cut(s) 441, 977, 1096
BspANI GGCC 2 cut(s) 131, 267
BspCNI CTCAG 1 cut(s) 562
BspLI GGNNCC 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 1162
BspMI ACCTGC 1 cut(s) 1151
BspPI GGATC 5 cut(s) 140, 251, 264, 721, 989
BspQI GCTCTTC 1 cut(s) 402
BspTNI GGTCTC 1 cut(s) 26
BsrDI GCAATG 3 cut(s) 450, 462, 934
BsrFI RCCGGY 1 cut(s) 161
BsrGI TGTACA 1 cut(s) 670
BsrI ACTGG 2 cut(s) 268, 1149
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 936
BssMI GATC 6 cut(s) 145, 256, 574, 713, 943, 981
BssT1I CCWWGG 1 cut(s) 936
Bst2UI CCWGG 4 cut(s) 92, 125, 269, 521
Bst4CI ACNGT 2 cut(s) 991, 1070
Bst6I CTCTTC 3 cut(s) 19, 24, 402
BstAPI GCANNNNNTGC 1 cut(s) 120
BstAUI TGTACA 1 cut(s) 670
BstC8I GCNNGC 4 cut(s) 112, 170, 236, 457
BstDEI CTNAG 3 cut(s) 8, 427, 549
BstDSI CCRYGG 1 cut(s) 936
BstF5I GGATG 2 cut(s) 343, 779
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 6 cut(s) 148, 259, 577, 716, 946, 984
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 6 cut(s) 145, 256, 574, 713, 943, 981
BstMWI GCNNNNNNNGC 9 cut(s) 120, 222, 231, 437, 440, 551, 938, 983, 1157
BstNI CCWGG 4 cut(s) 92, 125, 269, 521
BstSCI CCNGG 5 cut(s) 19, 90, 123, 267, 519
BstSFI CTRYAG 1 cut(s) 1158
BstSLI GKGCMC 1 cut(s) 457
BstV1I GCAGC 7 cut(s) 77, 80, 382, 418, 421, 424, 1135
BstV2I GAAGAC 2 cut(s) 517, 738
BstX2I RGATCY 3 cut(s) 256, 713, 943
BstYI RGATCY 3 cut(s) 256, 713, 943
Bsu36I CCTNAGG 1 cut(s) 549
BsuRI GGCC 2 cut(s) 131, 267
BtgI CCRYGG 1 cut(s) 936
BtsCI GGATG 2 cut(s) 343, 779
BtsIMutI CAGTG 2 cut(s) 194, 261
BveI ACCTGC 1 cut(s) 1151
Cac8I GCNNGC 4 cut(s) 112, 170, 236, 457
CaiI CAGNNNCTG 2 cut(s) 274, 710
CfoI GCGC 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 806
CseI GACGC 2 cut(s) 116, 998
CsiI ACCWGGT 1 cut(s) 519
Csp6I GTAC 3 cut(s) 671, 789, 1155
CspAI ACCGGT 1 cut(s) 161
CviAII CATG 5 cut(s) 173, 557, 751, 937, 1000
CviQI GTAC 3 cut(s) 671, 789, 1155
DdeI CTNAG 3 cut(s) 8, 427, 549
DpnI GATC 6 cut(s) 147, 258, 576, 715, 945, 983
DpnII GATC 6 cut(s) 145, 256, 574, 713, 943, 981
EaeI YGGCCR 1 cut(s) 265
Eam1104I CTCTTC 3 cut(s) 19, 24, 402
EarI CTCTTC 3 cut(s) 19, 24, 402
EciI GGCGGA 1 cut(s) 1111
Eco130I CCWWGG 1 cut(s) 936
Eco147I AGGCCT 1 cut(s) 131
Eco31I GGTCTC 1 cut(s) 26
Eco32I GATATC 1 cut(s) 1101
Eco47I GGWCC 1 cut(s) 806
Eco57I CTGAAG 1 cut(s) 170
Eco81I CCTNAGG 1 cut(s) 549
Eco88I CYCGRG 1 cut(s) 197
EcoRII CCWGG 4 cut(s) 90, 123, 267, 519
EcoRV GATATC 1 cut(s) 1101
EcoT14I CCWWGG 1 cut(s) 936
ErhI CCWWGG 1 cut(s) 936
FaeI CATG 5 cut(s) 176, 560, 754, 940, 1003
FatI CATG 5 cut(s) 172, 556, 750, 936, 999
FauI CCCGC 1 cut(s) 970
FbaI TGATCA 1 cut(s) 574
Fnu4HI GCNGC 8 cut(s) 66, 69, 371, 432, 435, 438, 441, 1149
FokI GGATG 2 cut(s) 330, 766
Fsp4HI GCNGC 8 cut(s) 66, 69, 371, 432, 435, 438, 441, 1149
FspBI CTAG 5 cut(s) 278, 468, 717, 771, 1167
GlaI GCGC 1 cut(s) 15
GluI GCNGC 8 cut(s) 66, 69, 371, 432, 435, 438, 441, 1149
GsuI CTGGAG 1 cut(s) 146
HaeIII GGCC 2 cut(s) 131, 267
HapII CCGG 3 cut(s) 20, 162, 1073
HgaI GACGC 2 cut(s) 116, 998
HhaI GCGC 1 cut(s) 16
Hin1II CATG 5 cut(s) 176, 560, 754, 940, 1003
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HinfI GANTC 7 cut(s) 87, 313, 647, 733, 833, 878, 1082
HpaII CCGG 3 cut(s) 20, 162, 1073
HphI GGTGA 2 cut(s) 602, 1127
Hpy166II GTNNAC 3 cut(s) 159, 512, 593
Hpy188III TCNNGA 4 cut(s) 197, 711, 846, 1013
Hpy8I GTNNAC 3 cut(s) 159, 512, 593
Hpy99I CGWCG 1 cut(s) 628
HpyAV CCTTC 8 cut(s) 142, 159, 247, 465, 470, 581, 612, 901
HpyCH4III ACNGT 2 cut(s) 991, 1070
HpyCH4IV ACGT 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 9 cut(s) 120, 222, 231, 437, 440, 551, 938, 983, 1157
HpyF3I CTNAG 3 cut(s) 8, 427, 549
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 5 cut(s) 176, 560, 754, 940, 1003
HspAI GCGC 1 cut(s) 14
Ksp22I TGATCA 1 cut(s) 574
Kzo9I GATC 6 cut(s) 145, 256, 574, 713, 943, 981
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 2 cut(s) 221, 1006
Lsp1109I GCAGC 7 cut(s) 77, 80, 382, 418, 421, 424, 1135
LweI GCATC 4 cut(s) 37, 385, 710, 716
MabI ACCWGGT 1 cut(s) 519
MaeI CTAG 5 cut(s) 278, 468, 717, 771, 1167
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 4 cut(s) 137, 613, 658, 678
MalI GATC 6 cut(s) 147, 258, 576, 715, 945, 983
MboI GATC 6 cut(s) 145, 256, 574, 713, 943, 981
MfeI CAATTG 1 cut(s) 606
MflI RGATCY 3 cut(s) 256, 713, 943
MhlI GDGCHC 2 cut(s) 457, 896
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 7 cut(s) 176, 606, 721, 882, 1035, 1120, 1174
MluNI TGGCCA 1 cut(s) 267
MlyI GAGTC 1 cut(s) 887
MmeI TCCRAC 2 cut(s) 371, 884
Mox20I TGGCCA 1 cut(s) 267
MscI TGGCCA 1 cut(s) 267
MseI TTAA 4 cut(s) 852, 960, 972, 1038
Msp20I TGGCCA 1 cut(s) 267
MspI CCGG 3 cut(s) 20, 162, 1073
MspR9I CCNGG 5 cut(s) 21, 92, 125, 269, 521
MunI CAATTG 1 cut(s) 606
Mva1269I GAATGC 1 cut(s) 192
MvaI CCWGG 4 cut(s) 92, 125, 269, 521
MwoI GCNNNNNNNGC 9 cut(s) 120, 222, 231, 437, 440, 551, 938, 983, 1157
NciI CCSGG 1 cut(s) 21
NcoI CCATGG 1 cut(s) 936
NdeII GATC 6 cut(s) 145, 256, 574, 713, 943, 981
NlaIII CATG 5 cut(s) 176, 560, 754, 940, 1003
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 2 cut(s) 137, 678
PaeR7I CTCGAG 1 cut(s) 197
PceI AGGCCT 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 402
PctI GAATGC 1 cut(s) 192
PfeI GAWTC 6 cut(s) 87, 313, 647, 733, 833, 1082
PflMI CCANNNNNTGG 1 cut(s) 353
PfoI TCCNGGA 2 cut(s) 19, 90
PinAI ACCGGT 1 cut(s) 161
PkrI GCNGC 8 cut(s) 67, 70, 372, 433, 436, 439, 442, 1150
PleI GAGTC 1 cut(s) 886
PpsI GAGTC 1 cut(s) 886
PshBI ATTAAT 1 cut(s) 1038
Psp6I CCWGG 4 cut(s) 90, 123, 267, 519
PspGI CCWGG 4 cut(s) 90, 123, 267, 519
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 1 cut(s) 806
PsrI GAACNNNNNNTAC 2 cut(s) 1147, 1179
PstI CTGCAG 1 cut(s) 1162
PstNI CAGNNNCTG 2 cut(s) 274, 710
PsuI RGATCY 3 cut(s) 256, 713, 943
RsaI GTAC 3 cut(s) 672, 790, 1156
RsaNI GTAC 3 cut(s) 671, 789, 1155
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 4 cut(s) 852, 960, 972, 1038
SatI GCNGC 8 cut(s) 66, 69, 371, 432, 435, 438, 441, 1149
Sau3AI GATC 6 cut(s) 145, 256, 574, 713, 943, 981
Sau96I GGNCC 1 cut(s) 806
SchI GAGTC 1 cut(s) 887
ScrFI CCNGG 5 cut(s) 21, 92, 125, 269, 521
SduI GDGCHC 2 cut(s) 457, 896
SexAI ACCWGGT 1 cut(s) 519
SfaNI GCATC 4 cut(s) 37, 385, 710, 716
SfcI CTRYAG 1 cut(s) 1158
Sfr274I CTCGAG 1 cut(s) 197
SinI GGWCC 1 cut(s) 806
SlaI CTCGAG 1 cut(s) 197
SmlI CTYRAG 3 cut(s) 197, 501, 654
SmoI CTYRAG 3 cut(s) 197, 501, 654
Sse9I AATT 7 cut(s) 176, 606, 721, 882, 1035, 1120, 1174
SseBI AGGCCT 1 cut(s) 131
SsiI CCGC 3 cut(s) 441, 977, 1096
SspI AATATT 1 cut(s) 336
SspMI CTAG 5 cut(s) 278, 468, 717, 771, 1167
StuI AGGCCT 1 cut(s) 131
StyD4I CCNGG 5 cut(s) 19, 90, 123, 267, 519
StyI CCWWGG 1 cut(s) 936
TaaI ACNGT 2 cut(s) 991, 1070
TaiI ACGT 1 cut(s) 158
TaqI TCGA 4 cut(s) 198, 311, 322, 847
TasI AATT 7 cut(s) 176, 606, 721, 882, 1035, 1120, 1174
TatI WGTACW 2 cut(s) 670, 1154
TauI GCSGC 1 cut(s) 443
TfiI GAWTC 6 cut(s) 87, 313, 647, 733, 833, 1082
Tru1I TTAA 4 cut(s) 852, 960, 972, 1038
Tru9I TTAA 4 cut(s) 852, 960, 972, 1038
TscAI CASTG 2 cut(s) 194, 268
TseFI GTSAC 2 cut(s) 137, 678
TseI GCWGC 7 cut(s) 65, 68, 370, 431, 434, 437, 1148
Tsp45I GTSAC 2 cut(s) 137, 678
TspDTI ATGAA 4 cut(s) 170, 189, 329, 650
TspRI CASTG 2 cut(s) 194, 268
Van91I CCANNNNNTGG 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 806
VspI ATTAAT 1 cut(s) 1038
XapI RAATTY 2 cut(s) 176, 1120
XcmI CCANNNNNNNNNTGG 1 cut(s) 800
XhoI CTCGAG 1 cut(s) 197
XspI CTAG 5 cut(s) 278, 468, 717, 771, 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.