Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007869

Physical Location & Seq

Genomic Coordinates Reverse (-)

7451503 .. 7456865

Gene Structure 5363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G22480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGGACAACAAAAATGATCAGGATATTGATGTTAGATCAGTGGTTGAAGCTGTTTCCGCCGATCTTTCCTTTGGTGCTCCCCTCTATGTGGTTGAGAGCATGTGCATGCGCTGCCAAGAAAATGGAACAACCAGATTTCTATTGACCTTAATTCCTCACTTCAGAAAGGTCTTAATATCTGCATTTGAATGTCCGCATTGCGGGGAAAGGAATAATGAAGTTCAGTTCGCAGGCGAGATTCAACCCCGTGGATGCTGTTACAATCTAGAGGTTCTAGCTGGTGATGTGAAGATATTTGACCGGCAAGTTGTGAAATCTGAATCAGCCACTATTAAGATTCCTGAACTGGATTTTGAGATTCCACCAGAGGCCCAACGTGGAAGTTTGTCTACTGTGGAAGGGATATTAGCACGGGCTGCTGATGAACTGAGTGCCCTTCAAGAAGAACGCAAGAAAGTTGATCCTAAAACTGCTGAAGCAATAGACCAATTCTTGTCCAAACTGAGAGCTTGTGCTAAAGCAGAGACATCCTTCACCTTCATTTTGGATGATCCTGCTGGAAACAGTTTCATTGAGAACCCACATGCTCCATCACCAGATCCCTCTCTAACCATCAAATTCTATGAGCGAACACCAGAGCAACAAGCAACACTTGGATATGTTGCTAACCCATCTCAGGCTGGACAATCAGAAGGAAGCCTTGGCGCACCTTCTACTAAAACAGCTTATGTACCTAATGGAACAATCGGAGCAACTGCTGGTCATCGCGCGATTGCTCAGAGTAATAGCACTGATATTTCCGACAACTTGTTCAGATACTCTGCGCCTGAAGAGGTGATGACTTTCCCTTCAACTTGCGGAGCATGTACGGAGCCGTGTGAGACACGGATGTTCGTGACTAAAATCCCGTACTTTCAGGAAGTTATTGTCATGGCATCTACATGTGACAGTTGTGGCTATCGTAATTCTGAGTTGAAGCCTGGTGGTGCAATTCCTGAAAAGGGAAAGAAGATTACTCTCTCTGTGAGGAACATTACAGACCTTAGCCGAGATGTTATCAAGTCGGACACTGCAGGAGTGATAATCCCAGAACTTGATCTGGAGCTAGCTGGTGGTACACTTGGTGGAATGGTAACAACAGTTGAAGGGTTGGTTACACAGATCAGAGAAAGCCTAGCGAGAGTTCACGGATTCACTTTTGGTGATAGTATGGAAGAGAGTAAGTTGAACAAATGGAGAGAATTTGGAGCCAGGCTCACTAAGCTCCTAAGCTTTGAACAGCCGTGGACATTGATTCTTGATGATGAATTAGCAAATTCCTTTATTGCACCAGTAACAGATGATATCAAAGATGACCATCAGCTCACATTTGAAGAGTACGAGAGGTCATGGGATCAAAACGAGGAGTTGGGTCTCAACGACATAGATACTTCTTCAGCTGATGCTGCTTATGAATCCACAGAGACGACTAAATTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

493

Amino Acids

54.08

Weight (kDa)

4.61

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_ZPR1	PF03367	31 - 82	6.3e-23	ZPR1 zinc-finger domain
jr-ZPR1	PF22794	99 - 220	1.2e-45	ZPR1 jelly-roll domain
Zn_ribbon_ZPR1	PF03367	278 - 333	4.2e-26	ZPR1 zinc-finger domain
jr-ZPR1	PF22794	347 - 472	2.9e-36	ZPR1 jelly-roll domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22480 AT5G37340 AT5G37340 AT5G37340 AT5G37340
fragaria_vesca	FvH4_3g12070 FvH4_3g12070 FvH4_3g12070
malus_domestica	MD05G1254800.v1.1 MD10G1234900.v1.1
prunus_persica	Prupe.4G109100_v2.0.a1
pyrus_communis	pycom05g23280 pycom10g19670
rosa_chinensis	RchiOBHm_Chr5g0019781
rosa_laevigata	RLG00000032469
rosa_multiflora	Rmu_ssc0000062.1_g000029
rosa_roxburghii	Rroxscaffold_1G00058350
rosa_rugosa	Rorug05G0054000
rosa_samantha	Rh2AG311200 Rh5AG144400 Rh5BG143100 Rh5CG154900 Rh5DG143400
rosa_wichuraiana	Rw5G012770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	389
AccII	CGCG	2 cut(s)	768, 770
AciI	CCGC	4 cut(s)	57, 194, 201, 858
AclWI	GGATC	4 cut(s)	455, 545, 593, 1401
AcsI	RAATTY	3 cut(s)	617, 1241, 1315
AcuI	CTGAAG	4 cut(s)	145, 495, 849, 1419
AdeI	CACNNNGTG	1 cut(s)	1124
AfaI	GTAC	5 cut(s)	732, 868, 911, 1117, 1379
AfiI	CCNNNNNNNGG	4 cut(s)	88, 200, 676, 1001
AflIII	ACRYGT	1 cut(s)	941
AjnI	CCWGG	2 cut(s)	979, 1250
AjuI	GAANNNNNNNTTGG	2 cut(s)	684, 716
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	4 cut(s)	518, 875, 1418, 1457
AlwI	GGATC	4 cut(s)	455, 545, 593, 1401
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	3 cut(s)	111, 416, 1445
ApoI	RAATTY	3 cut(s)	617, 1241, 1315
AspLEI	GCGC	4 cut(s)	111, 707, 770, 826
AspS9I	GGNCC	1 cut(s)	370
AsuHPI	GGTGA	5 cut(s)	293, 526, 585, 847, 1214
AsuNHI	GCTAGC	1 cut(s)	1105
BaeGI	GKGCMC	1 cut(s)	436
BarI	GAAGNNNNNNTAC	2 cut(s)	373, 405
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	3 cut(s)	98, 403, 1432
BccI	CCATC	4 cut(s)	598, 620, 679, 1365
BceAI	ACGGC	2 cut(s)	859, 1267
BciT130I	CCWGG	2 cut(s)	981, 1252
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	4 cut(s)	518, 875, 1418, 1457
BfaI	CTAG	4 cut(s)	266, 275, 1106, 1175
BfmI	CTRYAG	1 cut(s)	1071
BisI	GCNGC	3 cut(s)	112, 417, 1446
BlsI	GCNGC	3 cut(s)	113, 418, 1447
Bme1390I	CCNGG	2 cut(s)	981, 1252
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	2 cut(s)	873, 1249
BmrFI	CCNGG	2 cut(s)	981, 1252
BmsI	GCATC	3 cut(s)	242, 944, 1432
BmtI	GCTAGC	1 cut(s)	1109
BplI	GAGNNNNNCTC	2 cut(s)	1239, 1271
BpmI	CTGGAG	1 cut(s)	1121
Bpu10I	CCTNAGC	2 cut(s)	1043, 1268
BsaBI	GATNNNNATC	1 cut(s)	1356
BsaI	GGTCTC	1 cut(s)	1418
BsaJI	CCNNGG	3 cut(s)	247, 700, 1283
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 200, 676, 1001
Bse118I	RCCGGY	1 cut(s)	300
Bse1I	ACTGG	2 cut(s)	351, 1331
Bse3DI	GCAATG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	1356
BseBI	CCWGG	2 cut(s)	981, 1252
BseDI	CCNNGG	3 cut(s)	247, 700, 1283
BseGI	GGATG	4 cut(s)	257, 527, 553, 894
BseJI	GATNNNNATC	1 cut(s)	1356
BseLI	CCNNNNNNNGG	4 cut(s)	88, 200, 676, 1001
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	5 cut(s)	419, 494, 689, 791, 960
BseNI	ACTGG	2 cut(s)	351, 1331
BseRI	GAGGAG	1 cut(s)	1418
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	3 cut(s)	98, 403, 1432
Bsh1236I	CGCG	2 cut(s)	768, 770
BshFI	GGCC	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	301
BslI	CCNNNNNNNGG	4 cut(s)	88, 200, 676, 1001
BsmAI	GTCTC	4 cut(s)	518, 875, 1418, 1457
BsmBI	CGTCTC	1 cut(s)	1457
BsnI	GGCC	1 cut(s)	371
Bso31I	GGTCTC	1 cut(s)	1418
Bsp1286I	GDGCHC	2 cut(s)	79, 436
Bsp143I	GATC	9 cut(s)	16, 35, 61, 460, 550, 598, 1096, 1161, 1393
BspACI	CCGC	4 cut(s)	57, 194, 201, 858
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	5 cut(s)	420, 495, 688, 790, 961
BspFNI	CGCG	2 cut(s)	768, 770
BspLI	GGNNCC	2 cut(s)	873, 1249
BspMAI	CTGCAG	1 cut(s)	1075
BspOI	GCTAGC	1 cut(s)	1109
BspPI	GGATC	4 cut(s)	455, 545, 593, 1401
BspTNI	GGTCTC	1 cut(s)	1418
BsrDI	GCAATG	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	300
BsrI	ACTGG	2 cut(s)	351, 1331
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	3 cut(s)	247, 700, 1283
BssMI	GATC	9 cut(s)	16, 35, 61, 460, 550, 598, 1096, 1161, 1393
BssT1I	CCWWGG	1 cut(s)	700
Bst2UI	CCWGG	2 cut(s)	981, 1252
Bst4CI	ACNGT	4 cut(s)	394, 566, 950, 1141
Bst6I	CTCTTC	3 cut(s)	825, 1209, 1368
BstAPI	GCANNNNNTGC	2 cut(s)	111, 416
BstC8I	GCNNGC	3 cut(s)	107, 232, 1107
BstDEI	CTNAG	8 cut(s)	428, 503, 675, 777, 969, 1043, 1260, 1268
BstDSI	CCRYGG	2 cut(s)	247, 1283
BstF5I	GGATG	4 cut(s)	257, 527, 553, 894
BstFNI	CGCG	2 cut(s)	768, 770
BstHHI	GCGC	4 cut(s)	111, 707, 770, 826
BstKTI	GATC	9 cut(s)	19, 38, 64, 463, 553, 601, 1099, 1164, 1396
BstMAI	GTCTC	4 cut(s)	518, 875, 1418, 1457
BstMBI	GATC	9 cut(s)	16, 35, 61, 460, 550, 598, 1096, 1161, 1393
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 111, 416, 1261, 1445
BstNI	CCWGG	2 cut(s)	981, 1252
BstNSI	RCATGY	5 cut(s)	103, 109, 587, 867, 945
BstSCI	CCNGG	2 cut(s)	979, 1250
BstSFI	CTRYAG	1 cut(s)	1071
BstSLI	GKGCMC	1 cut(s)	436
BstUI	CGCG	2 cut(s)	768, 770
BstV1I	GCAGC	3 cut(s)	98, 403, 1432
BstX2I	RGATCY	1 cut(s)	598
BstXI	CCANNNNNNTGG	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	598
BsuRI	GGCC	1 cut(s)	371
BtgI	CCRYGG	2 cut(s)	247, 1283
BtgZI	GCGATG	1 cut(s)	749
BtsCI	GGATG	4 cut(s)	257, 527, 553, 894
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	3 cut(s)	45, 789, 1068
Cac8I	GCNNGC	3 cut(s)	107, 232, 1107
CfoI	GCGC	4 cut(s)	111, 707, 770, 826
Cfr10I	RCCGGY	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	370
Csp6I	GTAC	5 cut(s)	731, 867, 910, 1116, 1378
CviAII	CATG	7 cut(s)	100, 106, 584, 864, 931, 942, 1389
CviQI	GTAC	5 cut(s)	731, 867, 910, 1116, 1378
DdeI	CTNAG	8 cut(s)	428, 503, 675, 777, 969, 1043, 1260, 1268
DpnI	GATC	9 cut(s)	18, 37, 63, 462, 552, 600, 1098, 1163, 1395
DpnII	GATC	9 cut(s)	16, 35, 61, 460, 550, 598, 1096, 1161, 1393
DraIII	CACNNNGTG	1 cut(s)	1124
Eam1104I	CTCTTC	3 cut(s)	825, 1209, 1368
EarI	CTCTTC	3 cut(s)	825, 1209, 1368
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	700
Eco31I	GGTCTC	1 cut(s)	1418
Eco32I	GATATC	1 cut(s)	1345
Eco57I	CTGAAG	4 cut(s)	145, 495, 849, 1419
EcoRII	CCWGG	2 cut(s)	979, 1250
EcoRV	GATATC	1 cut(s)	1345
EcoT14I	CCWWGG	1 cut(s)	700
ErhI	CCWWGG	1 cut(s)	700
Esp3I	CGTCTC	1 cut(s)	1457
FaeI	CATG	7 cut(s)	103, 109, 587, 867, 934, 945, 1392
FalI	AAGNNNNNCTT	4 cut(s)	636, 668, 684, 716
FatI	CATG	7 cut(s)	99, 105, 583, 863, 930, 941, 1388
FauI	CCCGC	1 cut(s)	194
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	3 cut(s)	112, 417, 1446
FokI	GGATG	4 cut(s)	264, 514, 560, 901
Fsp4HI	GCNGC	3 cut(s)	112, 417, 1446
FspBI	CTAG	4 cut(s)	266, 275, 1106, 1175
GlaI	GCGC	4 cut(s)	110, 706, 769, 825
GluI	GCNGC	3 cut(s)	112, 417, 1446
GsuI	CTGGAG	1 cut(s)	1121
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	1 cut(s)	301
HhaI	GCGC	4 cut(s)	111, 707, 770, 826
Hin1II	CATG	7 cut(s)	103, 109, 587, 867, 934, 945, 1392
Hin6I	GCGC	4 cut(s)	109, 705, 768, 824
HinP1I	GCGC	4 cut(s)	109, 705, 768, 824
HindIII	AAGCTT	1 cut(s)	1270
HinfI	GANTC	7 cut(s)	238, 320, 337, 358, 1191, 1294, 1454
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	5 cut(s)	293, 526, 585, 847, 1214
Hpy166II	GTNNAC	4 cut(s)	390, 1118, 1186, 1287
Hpy188III	TCNNGA	9 cut(s)	20, 266, 341, 440, 895, 917, 995, 1100, 1298
Hpy8I	GTNNAC	4 cut(s)	390, 1118, 1186, 1287
HpyAV	CCTTC	8 cut(s)	392, 446, 541, 547, 686, 720, 858, 1139
HpyCH4III	ACNGT	4 cut(s)	394, 566, 950, 1141
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	5 cut(s)	105, 182, 989, 1073, 1328
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 111, 416, 1261, 1445
HpyF3I	CTNAG	8 cut(s)	428, 503, 675, 777, 969, 1043, 1260, 1268
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	7 cut(s)	103, 109, 587, 867, 934, 945, 1392
HspAI	GCGC	4 cut(s)	109, 705, 768, 824
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	9 cut(s)	16, 35, 61, 460, 550, 598, 1096, 1161, 1393
LmnI	GCTCC	8 cut(s)	82, 592, 749, 860, 871, 1102, 1247, 1269
Lsp1109I	GCAGC	3 cut(s)	98, 403, 1432
LweI	GCATC	3 cut(s)	242, 944, 1432
MaeI	CTAG	4 cut(s)	266, 275, 1106, 1175
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	6 cut(s)	257, 895, 944, 1132, 1153, 1333
MalI	GATC	9 cut(s)	18, 37, 63, 462, 552, 600, 1098, 1163, 1395
MboI	GATC	9 cut(s)	16, 35, 61, 460, 550, 598, 1096, 1161, 1393
MboII	GAAGA	7 cut(s)	301, 455, 842, 1021, 1226, 1385, 1425
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	2 cut(s)	79, 436
MluCI	AATT	9 cut(s)	150, 488, 617, 964, 990, 1241, 1307, 1315, 1472
MmeI	TCCRAC	2 cut(s)	825, 1044
MnlI	CCTC	9 cut(s)	92, 165, 262, 361, 613, 826, 1020, 1377, 1396
MseI	TTAA	4 cut(s)	149, 173, 333, 1480
MslI	CAYNNNNRTG	3 cut(s)	104, 187, 940
MspA1I	CMGCKG	1 cut(s)	1439
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	2 cut(s)	981, 1252
MvaI	CCWGG	2 cut(s)	981, 1252
MvnI	CGCG	2 cut(s)	768, 770
MwoI	GCNNNNNNNGC	5 cut(s)	56, 111, 416, 1261, 1445
NdeII	GATC	9 cut(s)	16, 35, 61, 460, 550, 598, 1096, 1161, 1393
NheI	GCTAGC	1 cut(s)	1105
NlaIII	CATG	7 cut(s)	103, 109, 587, 867, 934, 945, 1392
NlaIV	GGNNCC	2 cut(s)	873, 1249
NmeAIII	GCCGAG	1 cut(s)	1073
NmuCI	GTSAC	2 cut(s)	895, 944
NspI	RCATGY	5 cut(s)	103, 109, 587, 867, 945
PaeI	GCATGC	1 cut(s)	109
PciI	ACATGT	1 cut(s)	941
PfeI	GAWTC	7 cut(s)	238, 320, 337, 358, 1191, 1294, 1454
PkrI	GCNGC	3 cut(s)	113, 418, 1447
PscI	ACATGT	1 cut(s)	941
Psp6I	CCWGG	2 cut(s)	979, 1250
PspGI	CCWGG	2 cut(s)	979, 1250
PspN4I	GGNNCC	2 cut(s)	873, 1249
PspPI	GGNCC	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	1075
PsuI	RGATCY	1 cut(s)	598
PvuII	CAGCTG	1 cut(s)	1439
RsaI	GTAC	5 cut(s)	732, 868, 911, 1117, 1379
RsaNI	GTAC	5 cut(s)	731, 867, 910, 1116, 1378
RseI	CAYNNNNRTG	3 cut(s)	104, 187, 940
SaqAI	TTAA	4 cut(s)	149, 173, 333, 1480
SatI	GCNGC	3 cut(s)	112, 417, 1446
Sau3AI	GATC	9 cut(s)	16, 35, 61, 460, 550, 598, 1096, 1161, 1393
Sau96I	GGNCC	1 cut(s)	370
ScrFI	CCNGG	2 cut(s)	981, 1252
SduI	GDGCHC	2 cut(s)	79, 436
SfaNI	GCATC	3 cut(s)	242, 944, 1432
SfcI	CTRYAG	1 cut(s)	1071
SmiMI	CAYNNNNRTG	3 cut(s)	104, 187, 940
SphI	GCATGC	1 cut(s)	109
Sse9I	AATT	9 cut(s)	150, 488, 617, 964, 990, 1241, 1307, 1315, 1472
SsiI	CCGC	4 cut(s)	57, 194, 201, 858
SspMI	CTAG	4 cut(s)	266, 275, 1106, 1175
StyD4I	CCNGG	2 cut(s)	979, 1250
StyI	CCWWGG	1 cut(s)	700
TaaI	ACNGT	4 cut(s)	394, 566, 950, 1141
TaiI	ACGT	1 cut(s)	379
TasI	AATT	9 cut(s)	150, 488, 617, 964, 990, 1241, 1307, 1315, 1472
TfiI	GAWTC	7 cut(s)	238, 320, 337, 358, 1191, 1294, 1454
Tru1I	TTAA	4 cut(s)	149, 173, 333, 1480
Tru9I	TTAA	4 cut(s)	149, 173, 333, 1480
TscAI	CASTG	3 cut(s)	45, 796, 1075
TseFI	GTSAC	2 cut(s)	895, 944
TseI	GCWGC	3 cut(s)	111, 416, 1445
Tsp45I	GTSAC	2 cut(s)	895, 944
TspDTI	ATGAA	6 cut(s)	231, 438, 529, 559, 1320, 1467
TspGWI	ACGGA	3 cut(s)	884, 901, 1203
TspRI	CASTG	3 cut(s)	45, 796, 1075
XapI	RAATTY	3 cut(s)	617, 1241, 1315
XbaI	TCTAGA	1 cut(s)	265
XceI	RCATGY	5 cut(s)	103, 109, 587, 867, 945
XmiI	GTMKAC	1 cut(s)	389
XspI	CTAG	4 cut(s)	266, 275, 1106, 1175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.