Rh5BG143100

Zinc finger protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
14855246 .. 14861379
6134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG143100.1

Sequence Viewer

Length: 1377 bp
ATGGAAGCACCCGGCAGCCGTAGCAATACCAACAAAGACCAAATCGTCGACGTCCGGTCGGTGGTCGAAGCTGTCTCCGCCGACGACTCCTCCGACGCCCCTCTTTACAAAGTCGAAAGCCTCTGTATGCGTTGCGGCGAAAACGGCACAACCAGCTTTTTGTTTACTGTGATTCCAAACTTCAGAAAGATTTTGCTCTCCGCTTTCGAGTGTCCGCATTGCAATGAGAGGAATAATGAGGTTCAGTTTGCTGGTGAGCTTCAACCCAAGGGTTGTACCTACCGCTTGGAGGTGCCTTCCGGGGATCCCAAGATGCTTAATAGACAAGTGGTGAAATCTGAGTTTGCTACTATCAAGATTCCTGAATTAGATTTTGAGATTCCTCCAGAGTCTCAGTGTGGATCTTTGTCAACGGTGGAAGGGATATTATTACGAGCAGCAGATGAGTTGCAGGCACTTCAAGAAGAACGCAAGAGAGTGGATCCTCACACTGCTGAAGCTATAGACCAATTTTTATTAAAGCTGAGAGCATGCGCAACAGGAGATTCGTCTTTCACCTTTGTTTTGGATGATCCTTCTGGAAACAGCTTTATTGAGAACCTGTTTGCTCCATCCCCCGATCCATCACTAAGTATCAAGTTTTATGAGCGAACTCCAGAGCAACAATCAGTGCTAGGGTATGTTGTTGACTCATCACAAACAGGACATGCTCATGATGTAGCATCAACGAATCCAATTGGTCCTGACCAGGAGCAAAGAGTACCACATGGTTCAATTGGTGCAGCAGCTGGTCATCGTGCCATTGCTCAGAGTAATACTGAGGAAATTTCTGAAGCTTTGTTTCGATACTCTGCACCAGAGGAGGTGATGACTTTCCCATCAACATGCGGAACTTGTACTGCAAAATGTGAGACTCGAATGTTTGTCACTCACATCCCATACTTCCAACAAGTAATTGTCATGGCATCCACTTGTGACGCTTGTGGTTACCGCAACTCTGAGGTTTGTATTGATCTGCTTGTTCTCTCTTTTTCTTTCCCATGCTTCAATGGTAATTTTTGCTCTCTTGTGCAGTTGAAGCCTGGTGGAAGAATTCCTGATAAAGGGAAGAAAATTACTCTTTGCGTAAAAAATGTTAAGGATCTTAGTCGTGATGTCATAAAGTCGGATACTGCAAGTATGAAAATTCCAGAGCTTGAGTTGGAGCTGGGTAGTGGGACCCTCGGAGGACTTGTTACAACTATCGAAGGGTTGATCACGAAAATTTGTGAAAGCCTGGAGAGAGTGCATGGATTTTCTTTCGGAGATAGTCATGATCAAAATAAGAAAAGCAAGTGGTTAAACTTTACAGCAAGCCTAAATAAGGTATTTGGATAG

Protein Analysis

458

Amino Acids

50.15

Weight (kDa)

5.12

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_ZPR1 PF03367 38 - 89 1.6e-19 ZPR1 zinc-finger domain
jr-ZPR1 PF22794 105 - 226 4.7e-43 ZPR1 jelly-roll domain
Zn_ribbon_ZPR1 PF03367 288 - 335 3.2e-20 ZPR1 zinc-finger domain
jr-ZPR1 PF22794 380 - 456 1.7e-19 ZPR1 jelly-roll domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
AatII GACGTC 1 cut(s) 54
Acc16I TGCGCA 1 cut(s) 535
AccB1I GGYRCC 1 cut(s) 292
AccI GTMKAC 1 cut(s) 48
AciI CCGC 7 cut(s) 78, 135, 201, 215, 283, 888, 991
AclWI GGATC 8 cut(s) 299, 312, 409, 476, 489, 566, 614, 1149
AcsI RAATTY 4 cut(s) 825, 1092, 1185, 1263
AcuI CTGAAG 3 cut(s) 166, 516, 852
AcyI GRCGYC 2 cut(s) 51, 96
AfaI GTAC 3 cut(s) 277, 762, 898
AfiI CCNNNNNNNGG 4 cut(s) 61, 289, 1103, 1363
AgsI TTSAA 5 cut(s) 263, 461, 774, 1048, 1078
AhdI GACNNNNNGTC 1 cut(s) 55
AjnI CCWGG 3 cut(s) 747, 1081, 1275
Alw26I GTCTC 3 cut(s) 79, 396, 905
AlwI GGATC 8 cut(s) 299, 312, 409, 476, 489, 566, 614, 1149
AlwNI CAGNNNCTG 1 cut(s) 788
ApeKI GCWGC 4 cut(s) 15, 437, 782, 785
ApoI RAATTY 4 cut(s) 825, 1092, 1185, 1263
AspLEI GCGC 1 cut(s) 536
AspS9I GGNCC 2 cut(s) 740, 1218
AsuC2I CCSGG 2 cut(s) 12, 301
AsuHPI GGTGA 4 cut(s) 266, 343, 547, 877
AvaII GGWCC 2 cut(s) 740, 1218
BamHI GGATCC 2 cut(s) 304, 481
BanI GGYRCC 1 cut(s) 292
BbvI GCAGC 4 cut(s) 27, 449, 794, 797
BccI CCATC 3 cut(s) 619, 631, 886
BceAI ACGGC 2 cut(s) 3, 160
BciT130I CCWGG 3 cut(s) 749, 1083, 1277
BciVI GTATCC 1 cut(s) 1162
BclI TGATCA 2 cut(s) 1254, 1315
BcnI CCSGG 2 cut(s) 12, 301
BcoDI GTCTC 3 cut(s) 79, 396, 905
BfaI CTAG 1 cut(s) 674
BfmI CTRYAG 1 cut(s) 501
BfuI GTATCC 1 cut(s) 1162
BisI GCNGC 5 cut(s) 16, 136, 438, 783, 786
BlsI GCNGC 5 cut(s) 17, 137, 439, 784, 787
Bme1390I CCNGG 5 cut(s) 12, 301, 749, 1083, 1277
Bme18I GGWCC 2 cut(s) 740, 1218
BmeRI GACNNNNNGTC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 740, 1218
BmiI GGNNCC 5 cut(s) 294, 306, 483, 1219, 1220
BmrFI CCNGG 5 cut(s) 12, 301, 749, 1083, 1277
BmsI GCATC 3 cut(s) 303, 731, 974
BpmI CTGGAG 3 cut(s) 369, 639, 1298
BpuEI CTTGAG 1 cut(s) 1217
BpuMI CCSGG 2 cut(s) 12, 301
BsaHI GRCGYC 2 cut(s) 51, 96
BsaJI CCNNGG 3 cut(s) 267, 300, 1222
BsaWI WCCGGW 1 cut(s) 54
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 1218, 1248
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 289, 1103, 1363
Bse3DI GCAATG 3 cut(s) 217, 229, 801
BseBI CCWGG 3 cut(s) 749, 1083, 1277
BseDI CCNNGG 3 cut(s) 267, 300, 1222
BseGI GGATG 4 cut(s) 574, 611, 933, 965
BseLI CCNNNNNNNGG 4 cut(s) 61, 289, 1103, 1363
BseMI GCAATG 3 cut(s) 217, 229, 801
BseMII CTCAG 6 cut(s) 330, 407, 515, 810, 821, 990
BseRI GAGGAG 2 cut(s) 79, 875
BseXI GCAGC 4 cut(s) 27, 449, 794, 797
BseYI CCCAGC 1 cut(s) 1207
BsgI GTGCAG 3 cut(s) 801, 837, 1091
Bsh1285I CGRYCG 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 292
BsiEI CGRYCG 1 cut(s) 59
BsiSI CCGG 3 cut(s) 12, 55, 300
BslFI GGGAC 1 cut(s) 1231
BslI CCNNNNNNNGG 4 cut(s) 61, 289, 1103, 1363
BsmAI GTCTC 3 cut(s) 79, 396, 905
BsmFI GGGAC 1 cut(s) 1231
Bsp143I GATC 9 cut(s) 304, 401, 481, 571, 619, 1012, 1141, 1254, 1315
BspACI CCGC 7 cut(s) 78, 135, 201, 215, 283, 888, 991
BspCNI CTCAG 6 cut(s) 331, 406, 516, 811, 820, 991
BspHI TCATGA 2 cut(s) 712, 1312
BspLI GGNNCC 5 cut(s) 294, 306, 483, 1219, 1220
BspPI GGATC 8 cut(s) 299, 312, 409, 476, 489, 566, 614, 1149
BspT107I GGYRCC 1 cut(s) 292
BsrDI GCAATG 3 cut(s) 217, 229, 801
BssECI CCNNGG 3 cut(s) 267, 300, 1222
BssMI GATC 9 cut(s) 304, 401, 481, 571, 619, 1012, 1141, 1254, 1315
BssNI GRCGYC 2 cut(s) 51, 96
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 3 cut(s) 749, 1083, 1277
Bst4CI ACNGT 2 cut(s) 169, 415
BstACI GRCGYC 2 cut(s) 51, 96
BstC8I GCNNGC 3 cut(s) 453, 532, 1354
BstDEI CTNAG 8 cut(s) 339, 393, 524, 629, 807, 819, 999, 1145
BstEII GGTNACC 1 cut(s) 986
BstENI CCTNNNNNAGG 2 cut(s) 1101, 1361
BstF5I GGATG 4 cut(s) 574, 611, 933, 965
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 9 cut(s) 307, 404, 484, 574, 622, 1015, 1144, 1257, 1318
BstMAI GTCTC 3 cut(s) 79, 396, 905
BstMBI GATC 9 cut(s) 304, 401, 481, 571, 619, 1012, 1141, 1254, 1315
BstMCI CGRYCG 1 cut(s) 59
BstMWI GCNNNNNNNGC 5 cut(s) 21, 77, 144, 153, 1078
BstNI CCWGG 3 cut(s) 749, 1083, 1277
BstNSI RCATGY 3 cut(s) 534, 710, 888
BstPI GGTNACC 1 cut(s) 986
BstSCI CCNGG 5 cut(s) 10, 299, 747, 1081, 1275
BstSFI CTRYAG 1 cut(s) 501
BstV1I GCAGC 4 cut(s) 27, 449, 794, 797
BstX2I RGATCY 4 cut(s) 304, 401, 481, 1141
BstYI RGATCY 4 cut(s) 304, 401, 481, 1141
BsuI GTATCC 1 cut(s) 1162
BtsCI GGATG 4 cut(s) 574, 611, 933, 965
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 3 cut(s) 401, 489, 675
Cac8I GCNNGC 3 cut(s) 453, 532, 1354
CaiI CAGNNNCTG 1 cut(s) 788
CciI TCATGA 2 cut(s) 712, 1312
CfoI GCGC 1 cut(s) 536
Cfr13I GGNCC 2 cut(s) 740, 1218
CseI GACGC 2 cut(s) 104, 986
Csp6I GTAC 3 cut(s) 276, 761, 897
CviAII CATG 9 cut(s) 531, 707, 713, 767, 885, 961, 1041, 1289, 1313
CviQI GTAC 3 cut(s) 276, 761, 897
DdeI CTNAG 8 cut(s) 339, 393, 524, 629, 807, 819, 999, 1145
DpnI GATC 9 cut(s) 306, 403, 483, 573, 621, 1014, 1143, 1256, 1317
DpnII GATC 9 cut(s) 304, 401, 481, 571, 619, 1012, 1141, 1254, 1315
DrdI GACNNNNNNGTC 1 cut(s) 44
DriI GACNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 44
Eam1105I GACNNNNNGTC 1 cut(s) 55
EciI GGCGGA 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 267
Eco47I GGWCC 2 cut(s) 740, 1218
Eco57I CTGAAG 3 cut(s) 166, 516, 852
Eco91I GGTNACC 1 cut(s) 986
EcoNI CCTNNNNNAGG 2 cut(s) 1101, 1361
EcoO109I RGGNCCY 1 cut(s) 1218
EcoO65I GGTNACC 1 cut(s) 986
EcoRI GAATTC 1 cut(s) 1092
EcoRII CCWGG 3 cut(s) 747, 1081, 1275
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 9 cut(s) 534, 710, 716, 770, 888, 964, 1044, 1292, 1316
FaqI GGGAC 1 cut(s) 1231
FatI CATG 9 cut(s) 530, 706, 712, 766, 884, 960, 1040, 1288, 1312
FbaI TGATCA 2 cut(s) 1254, 1315
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 5 cut(s) 16, 136, 438, 783, 786
FokI GGATG 4 cut(s) 581, 598, 920, 952
Fsp4HI GCNGC 5 cut(s) 16, 136, 438, 783, 786
FspBI CTAG 1 cut(s) 674
FspI TGCGCA 1 cut(s) 535
GlaI GCGC 1 cut(s) 535
GluI GCNGC 5 cut(s) 16, 136, 438, 783, 786
GsaI CCCAGC 1 cut(s) 1211
GsuI CTGGAG 3 cut(s) 369, 639, 1298
HapII CCGG 3 cut(s) 12, 55, 300
HgaI GACGC 2 cut(s) 104, 986
HhaI GCGC 1 cut(s) 536
Hin1I GRCGYC 2 cut(s) 51, 96
Hin1II CATG 9 cut(s) 534, 710, 716, 770, 888, 964, 1044, 1292, 1316
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HincII GTYRAC 3 cut(s) 49, 411, 688
HindII GTYRAC 3 cut(s) 49, 411, 688
HindIII AAGCTT 1 cut(s) 834
HinfI GANTC 9 cut(s) 86, 172, 358, 379, 389, 545, 689, 730, 913
HpaII CCGG 3 cut(s) 12, 55, 300
HphI GGTGA 4 cut(s) 266, 343, 547, 877
Hpy166II GTNNAC 4 cut(s) 49, 165, 411, 688
Hpy188I TCNGA 9 cut(s) 94, 185, 340, 810, 832, 1000, 1168, 1226, 1304
Hpy8I GTNNAC 4 cut(s) 49, 165, 411, 688
Hpy99I CGWCG 4 cut(s) 50, 53, 86, 98
HpyAV CCTTC 4 cut(s) 306, 413, 585, 1241
HpyCH4III ACNGT 2 cut(s) 169, 415
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 8 cut(s) 222, 451, 782, 854, 902, 1072, 1175, 1288
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 77, 144, 153, 1078
HpyF3I CTNAG 8 cut(s) 339, 393, 524, 629, 807, 819, 999, 1145
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 2 cut(s) 51, 96
Hsp92II CATG 9 cut(s) 534, 710, 716, 770, 888, 964, 1044, 1292, 1316
HspAI GCGC 1 cut(s) 534
KflI GGGWCCC 1 cut(s) 1218
Ksp22I TGATCA 2 cut(s) 1254, 1315
Kzo9I GATC 9 cut(s) 304, 401, 481, 571, 619, 1012, 1141, 1254, 1315
LmnI GCTCC 3 cut(s) 613, 751, 1204
Lsp1109I GCAGC 4 cut(s) 27, 449, 794, 797
LweI GCATC 3 cut(s) 303, 731, 974
MaeI CTAG 1 cut(s) 674
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 4 cut(s) 925, 974, 986, 1234
MalI GATC 9 cut(s) 306, 403, 483, 573, 621, 1014, 1143, 1256, 1317
MboI GATC 9 cut(s) 304, 401, 481, 571, 619, 1012, 1141, 1254, 1315
MboII GAAGA 3 cut(s) 476, 1101, 1120
MfeI CAATTG 2 cut(s) 735, 774
MflI RGATCY 4 cut(s) 304, 401, 481, 1141
MlyI GAGTC 4 cut(s) 80, 398, 683, 907
MmeI TCCRAC 4 cut(s) 117, 970, 1146, 1182
MseI TTAA 4 cut(s) 318, 518, 1137, 1340
MslI CAYNNNNRTG 3 cut(s) 222, 711, 883
MspA1I CMGCKG 1 cut(s) 788
MspI CCGG 3 cut(s) 12, 55, 300
MspR9I CCNGG 5 cut(s) 12, 301, 749, 1083, 1277
MunI CAATTG 2 cut(s) 735, 774
MvaI CCWGG 3 cut(s) 749, 1083, 1277
MwoI GCNNNNNNNGC 5 cut(s) 21, 77, 144, 153, 1078
NciI CCSGG 2 cut(s) 12, 301
NdeII GATC 9 cut(s) 304, 401, 481, 571, 619, 1012, 1141, 1254, 1315
NlaIII CATG 9 cut(s) 534, 710, 716, 770, 888, 964, 1044, 1292, 1316
NlaIV GGNNCC 5 cut(s) 294, 306, 483, 1219, 1220
NmuCI GTSAC 2 cut(s) 925, 974
NsbI TGCGCA 1 cut(s) 535
NspI RCATGY 3 cut(s) 534, 710, 888
PaeI GCATGC 1 cut(s) 534
PagI TCATGA 2 cut(s) 712, 1312
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PfeI GAWTC 5 cut(s) 172, 358, 379, 545, 730
PkrI GCNGC 5 cut(s) 17, 137, 439, 784, 787
PleI GAGTC 4 cut(s) 80, 397, 683, 907
PpsI GAGTC 4 cut(s) 80, 397, 683, 907
PpuMI RGGWCCY 1 cut(s) 1218
Psp5II RGGWCCY 1 cut(s) 1218
Psp6I CCWGG 3 cut(s) 747, 1081, 1275
PspEI GGTNACC 1 cut(s) 986
PspFI CCCAGC 1 cut(s) 1207
PspGI CCWGG 3 cut(s) 747, 1081, 1275
PspN4I GGNNCC 5 cut(s) 294, 306, 483, 1219, 1220
PspPI GGNCC 2 cut(s) 740, 1218
PspPPI RGGWCCY 1 cut(s) 1218
PstNI CAGNNNCTG 1 cut(s) 788
PsuI RGATCY 4 cut(s) 304, 401, 481, 1141
PvuII CAGCTG 1 cut(s) 788
RsaI GTAC 3 cut(s) 277, 762, 898
RsaNI GTAC 3 cut(s) 276, 761, 897
RseI CAYNNNNRTG 3 cut(s) 222, 711, 883
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 4 cut(s) 318, 518, 1137, 1340
SatI GCNGC 5 cut(s) 16, 136, 438, 783, 786
Sau3AI GATC 9 cut(s) 304, 401, 481, 571, 619, 1012, 1141, 1254, 1315
Sau96I GGNCC 2 cut(s) 740, 1218
SchI GAGTC 4 cut(s) 80, 398, 683, 907
ScrFI CCNGG 5 cut(s) 12, 301, 749, 1083, 1277
SfaNI GCATC 3 cut(s) 303, 731, 974
SfcI CTRYAG 1 cut(s) 501
SgrDI CGTCGACG 1 cut(s) 47
SinI GGWCC 2 cut(s) 740, 1218
SmiMI CAYNNNNRTG 3 cut(s) 222, 711, 883
SmlI CTYRAG 1 cut(s) 1196
SmoI CTYRAG 1 cut(s) 1196
SphI GCATGC 1 cut(s) 534
SsiI CCGC 7 cut(s) 78, 135, 201, 215, 283, 888, 991
SspMI CTAG 1 cut(s) 674
StyD4I CCNGG 5 cut(s) 10, 299, 747, 1081, 1275
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 169, 415
TaiI ACGT 1 cut(s) 54
TaqI TCGA 7 cut(s) 48, 66, 114, 207, 844, 916, 1245
TatI WGTACW 1 cut(s) 896
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 5 cut(s) 172, 358, 379, 545, 730
Tru1I TTAA 4 cut(s) 318, 518, 1137, 1340
Tru9I TTAA 4 cut(s) 318, 518, 1137, 1340
TscAI CASTG 3 cut(s) 401, 496, 675
TseFI GTSAC 2 cut(s) 925, 974
TseI GCWGC 4 cut(s) 15, 437, 782, 785
Tsp45I GTSAC 2 cut(s) 925, 974
TspDTI ATGAA 1 cut(s) 1196
TspRI CASTG 3 cut(s) 401, 496, 675
VpaK11BI GGWCC 2 cut(s) 740, 1218
XagI CCTNNNNNAGG 2 cut(s) 1101, 1361
XapI RAATTY 4 cut(s) 825, 1092, 1185, 1263
XceI RCATGY 3 cut(s) 534, 710, 888
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 674
ZraI GACGTC 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.