Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007869

Physical Location & Seq

Genomic Coordinates Forward (+)

15153349 .. 15179193

Gene Structure 25845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG144400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGAAGCACCCGGCAGCCGTAGCAATACCAACAAGGACCAAATCGTCGACGTCCGGTCGGTGGTCGAAGCCGTCTCCGCCGACGACTCCTCCGACGCCCCTCTTTACAAAGTCGAAAGCCTCTGTATGCGTTGCGGCGAAAACGGCACAACCAGCTTTTTGTTCACTGTGATTCCAAACTTCAGAAAGATTTTGCTCTCCGCTTTCGAGTGTCCGCATTGCAATGAGAGGAATAATGAGGTTCAGTTTGCTGGTGAGCTTCAACCCAAGGGTTGTACCTACCGCTTGGAGGTGCCTTCCGGGGATCCCAAGATGCTTAATAGACAAGTGGTGAAATCTGAGTTTGCTACTATCAAGATTCCTGAATTAGATTTTGAGATTCCTCCAGAGTCTCAGCGTGGATCTTTGTCAACGGTAGAAGGGATATTATTACGAGCAGCAGATGAGTTGCAGGCACTTCAAGAAGAACGCAAGAGAGTGGATCCTCACACTGCTGAAGCTATAGACCAATTTTTGTTAAAGCTGAGAGCATGCGCAACAGGAGATTCGTCTTTCACCTTCATTTTGGATGATCCTTCTGGAAACAGCTTTATTGAGAACCTGTTTGCTCCATCCCCCGATCCATCACTAAGTATCAAGTTTTATGATCGAACTCCAGAGCAACAATCAGTGCTAGGGTATGTAGTTGACTCATCACAAACAGGACATGCTCATGATGTAGCATCAACGAATCCAATTAGTCCTGACCAGGAGCAAAGAGTACCACATGGTTCAATTGGTGCAGCAGCTGGTCATCGTGCCATTGCTCAGAGTAATACTGAGGAAATTTCTGAAGCTTTGTTTCGATACTCTGCACCAGAGGAGGTGATGACTTTCCCATCAACATGCGGAACTTGTACTGCAAAATGTGAGACTCGAATGTTTGTCACTCACATCCCATACTTCCAACAAGTAATTGTCATGGCATCCACTTGTGACGCTTGCGGTTACCGCAACTCTGAGTTGAAGCCTGGTGGAAGAATTCCTGATAAAGGGAAGAAAATTACTCTGCGTGTAAAAAATGTTAAGGATCTTAGTCGTGATGTCATAAAGGTATATGCTTTGTTCTTATTGTATCTTATCATCATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

377

Amino Acids

41.58

Weight (kDa)

5.25

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_ZPR1	PF03367	38 - 89	1.2e-19	ZPR1 zinc-finger domain
jr-ZPR1	PF22794	105 - 226	7e-44	ZPR1 jelly-roll domain
Zn_ribbon_ZPR1	PF03367	288 - 342	4.3e-25	ZPR1 zinc-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22480 AT5G37340 AT5G37340 AT5G37340 AT5G37340
fragaria_vesca	FvH4_3g12070 FvH4_3g12070 FvH4_3g12070
malus_domestica	MD05G1254800.v1.1 MD10G1234900.v1.1
prunus_persica	Prupe.4G109100_v2.0.a1
pyrus_communis	pycom05g23280 pycom10g19670
rosa_chinensis	RchiOBHm_Chr5g0019781
rosa_laevigata	RLG00000032469
rosa_multiflora	Rmu_ssc0000062.1_g000029
rosa_roxburghii	Rroxscaffold_1G00058350
rosa_rugosa	Rorug05G0054000
rosa_samantha	Rh2AG311200 Rh5AG144400 Rh5BG143100 Rh5CG154900 Rh5DG143400
rosa_wichuraiana	Rw5G012770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AatII	GACGTC	1 cut(s)	54
Acc16I	TGCGCA	1 cut(s)	535
AccB1I	GGYRCC	1 cut(s)	292
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	8 cut(s)	78, 135, 201, 215, 283, 888, 984, 991
AclWI	GGATC	8 cut(s)	299, 312, 409, 476, 489, 566, 614, 1077
AcsI	RAATTY	2 cut(s)	825, 1020
AcuI	CTGAAG	3 cut(s)	166, 516, 852
AcyI	GRCGYC	2 cut(s)	51, 96
AfaI	GTAC	3 cut(s)	277, 762, 898
AfiI	CCNNNNNNNGG	3 cut(s)	61, 289, 1031
AgsI	TTSAA	4 cut(s)	263, 461, 774, 1006
AhdI	GACNNNNNGTC	1 cut(s)	55
AjnI	CCWGG	2 cut(s)	747, 1009
AluBI	AGCT	7 cut(s)	156, 259, 500, 523, 588, 788, 836
AluI	AGCT	7 cut(s)	156, 259, 500, 523, 588, 788, 836
Alw26I	GTCTC	3 cut(s)	79, 396, 905
AlwI	GGATC	8 cut(s)	299, 312, 409, 476, 489, 566, 614, 1077
AlwNI	CAGNNNCTG	1 cut(s)	788
ApeKI	GCWGC	4 cut(s)	15, 437, 782, 785
ApoI	RAATTY	2 cut(s)	825, 1020
AspLEI	GCGC	1 cut(s)	536
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	2 cut(s)	12, 301
AsuHPI	GGTGA	4 cut(s)	266, 343, 547, 877
AvaII	GGWCC	1 cut(s)	37
BamHI	GGATCC	2 cut(s)	304, 481
BanI	GGYRCC	1 cut(s)	292
BbvI	GCAGC	4 cut(s)	27, 449, 794, 797
BccI	CCATC	3 cut(s)	619, 631, 886
BceAI	ACGGC	3 cut(s)	3, 56, 160
BciT130I	CCWGG	2 cut(s)	749, 1011
BcnI	CCSGG	2 cut(s)	12, 301
BcoDI	GTCTC	3 cut(s)	79, 396, 905
BfaI	CTAG	1 cut(s)	674
BfmI	CTRYAG	1 cut(s)	501
BisI	GCNGC	5 cut(s)	16, 136, 438, 783, 786
BlsI	GCNGC	5 cut(s)	17, 137, 439, 784, 787
Bme1390I	CCNGG	4 cut(s)	12, 301, 749, 1011
Bme18I	GGWCC	1 cut(s)	37
BmeRI	GACNNNNNGTC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	3 cut(s)	294, 306, 483
BmrFI	CCNGG	4 cut(s)	12, 301, 749, 1011
BmsI	GCATC	3 cut(s)	303, 731, 974
BpmI	CTGGAG	2 cut(s)	369, 639
BpuMI	CCSGG	2 cut(s)	12, 301
BsaHI	GRCGYC	2 cut(s)	51, 96
BsaJI	CCNNGG	2 cut(s)	267, 300
BsaWI	WCCGGW	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 289, 1031
Bse3DI	GCAATG	4 cut(s)	217, 229, 801, 1125
BseBI	CCWGG	2 cut(s)	749, 1011
BseDI	CCNNGG	2 cut(s)	267, 300
BseGI	GGATG	4 cut(s)	574, 611, 933, 965
BseLI	CCNNNNNNNGG	3 cut(s)	61, 289, 1031
BseMI	GCAATG	4 cut(s)	217, 229, 801, 1125
BseMII	CTCAG	6 cut(s)	330, 407, 515, 810, 821, 990
BseRI	GAGGAG	2 cut(s)	79, 875
BseXI	GCAGC	4 cut(s)	27, 449, 794, 797
BsgI	GTGCAG	2 cut(s)	801, 837
Bsh1285I	CGRYCG	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	292
BsiEI	CGRYCG	1 cut(s)	59
BsiSI	CCGG	3 cut(s)	12, 55, 300
BslI	CCNNNNNNNGG	3 cut(s)	61, 289, 1031
BsmAI	GTCTC	3 cut(s)	79, 396, 905
BsmBI	CGTCTC	1 cut(s)	79
Bsp143I	GATC	7 cut(s)	304, 401, 481, 571, 619, 646, 1069
BspACI	CCGC	8 cut(s)	78, 135, 201, 215, 283, 888, 984, 991
BspCNI	CTCAG	6 cut(s)	331, 406, 516, 811, 820, 991
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	3 cut(s)	294, 306, 483
BspPI	GGATC	8 cut(s)	299, 312, 409, 476, 489, 566, 614, 1077
BspT107I	GGYRCC	1 cut(s)	292
BsrDI	GCAATG	4 cut(s)	217, 229, 801, 1125
BssECI	CCNNGG	2 cut(s)	267, 300
BssMI	GATC	7 cut(s)	304, 401, 481, 571, 619, 646, 1069
BssNI	GRCGYC	2 cut(s)	51, 96
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	749, 1011
Bst4CI	ACNGT	2 cut(s)	169, 415
BstACI	GRCGYC	2 cut(s)	51, 96
BstC8I	GCNNGC	3 cut(s)	453, 532, 982
BstDEI	CTNAG	8 cut(s)	339, 393, 524, 629, 807, 819, 999, 1073
BstEII	GGTNACC	1 cut(s)	986
BstENI	CCTNNNNNAGG	1 cut(s)	1029
BstF5I	GGATG	4 cut(s)	574, 611, 933, 965
BstHHI	GCGC	1 cut(s)	536
BstKTI	GATC	7 cut(s)	307, 404, 484, 574, 622, 649, 1072
BstMAI	GTCTC	3 cut(s)	79, 396, 905
BstMBI	GATC	7 cut(s)	304, 401, 481, 571, 619, 646, 1069
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 77, 144, 153, 990
BstNI	CCWGG	2 cut(s)	749, 1011
BstNSI	RCATGY	3 cut(s)	534, 710, 888
BstPI	GGTNACC	1 cut(s)	986
BstSCI	CCNGG	4 cut(s)	10, 299, 747, 1009
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	4 cut(s)	27, 449, 794, 797
BstX2I	RGATCY	4 cut(s)	304, 401, 481, 1069
BstYI	RGATCY	4 cut(s)	304, 401, 481, 1069
BtsCI	GGATG	4 cut(s)	574, 611, 933, 965
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	3 cut(s)	165, 489, 675
Cac8I	GCNNGC	3 cut(s)	453, 532, 982
CaiI	CAGNNNCTG	1 cut(s)	788
CciI	TCATGA	1 cut(s)	712
CfoI	GCGC	1 cut(s)	536
Cfr13I	GGNCC	1 cut(s)	37
CseI	GACGC	2 cut(s)	104, 986
Csp6I	GTAC	3 cut(s)	276, 761, 897
CviAII	CATG	6 cut(s)	531, 707, 713, 767, 885, 961
CviQI	GTAC	3 cut(s)	276, 761, 897
DdeI	CTNAG	8 cut(s)	339, 393, 524, 629, 807, 819, 999, 1073
DpnI	GATC	7 cut(s)	306, 403, 483, 573, 621, 648, 1071
DpnII	GATC	7 cut(s)	304, 401, 481, 571, 619, 646, 1069
DrdI	GACNNNNNNGTC	1 cut(s)	44
DriI	GACNNNNNGTC	1 cut(s)	55
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eam1105I	GACNNNNNGTC	1 cut(s)	55
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	3 cut(s)	166, 516, 852
Eco91I	GGTNACC	1 cut(s)	986
EcoNI	CCTNNNNNAGG	1 cut(s)	1029
EcoO65I	GGTNACC	1 cut(s)	986
EcoRI	GAATTC	1 cut(s)	1020
EcoRII	CCWGG	2 cut(s)	747, 1009
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	6 cut(s)	534, 710, 716, 770, 888, 964
FatI	CATG	6 cut(s)	530, 706, 712, 766, 884, 960
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	5 cut(s)	16, 136, 438, 783, 786
FokI	GGATG	4 cut(s)	581, 598, 920, 952
Fsp4HI	GCNGC	5 cut(s)	16, 136, 438, 783, 786
FspBI	CTAG	1 cut(s)	674
FspI	TGCGCA	1 cut(s)	535
GlaI	GCGC	1 cut(s)	535
GluI	GCNGC	5 cut(s)	16, 136, 438, 783, 786
GsuI	CTGGAG	2 cut(s)	369, 639
HapII	CCGG	3 cut(s)	12, 55, 300
HgaI	GACGC	2 cut(s)	104, 986
HhaI	GCGC	1 cut(s)	536
Hin1I	GRCGYC	2 cut(s)	51, 96
Hin1II	CATG	6 cut(s)	534, 710, 716, 770, 888, 964
Hin6I	GCGC	1 cut(s)	534
HinP1I	GCGC	1 cut(s)	534
HincII	GTYRAC	3 cut(s)	49, 411, 688
HindII	GTYRAC	3 cut(s)	49, 411, 688
HindIII	AAGCTT	1 cut(s)	834
HinfI	GANTC	9 cut(s)	86, 172, 358, 379, 389, 545, 689, 730, 913
HpaII	CCGG	3 cut(s)	12, 55, 300
HphI	GGTGA	4 cut(s)	266, 343, 547, 877
Hpy166II	GTNNAC	4 cut(s)	49, 165, 411, 688
Hpy188I	TCNGA	6 cut(s)	94, 185, 340, 810, 832, 1000
Hpy8I	GTNNAC	4 cut(s)	49, 165, 411, 688
Hpy99I	CGWCG	4 cut(s)	50, 53, 86, 98
HpyAV	CCTTC	4 cut(s)	306, 413, 568, 585
HpyCH4III	ACNGT	2 cut(s)	169, 415
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	6 cut(s)	222, 451, 782, 854, 902, 1130
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 77, 144, 153, 990
HpyF3I	CTNAG	8 cut(s)	339, 393, 524, 629, 807, 819, 999, 1073
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	2 cut(s)	51, 96
Hsp92II	CATG	6 cut(s)	534, 710, 716, 770, 888, 964
HspAI	GCGC	1 cut(s)	534
Kzo9I	GATC	7 cut(s)	304, 401, 481, 571, 619, 646, 1069
LmnI	GCTCC	2 cut(s)	613, 751
Lsp1109I	GCAGC	4 cut(s)	27, 449, 794, 797
LweI	GCATC	3 cut(s)	303, 731, 974
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	3 cut(s)	925, 974, 986
MalI	GATC	7 cut(s)	306, 403, 483, 573, 621, 648, 1071
MboI	GATC	7 cut(s)	304, 401, 481, 571, 619, 646, 1069
MboII	GAAGA	3 cut(s)	476, 1029, 1048
MfeI	CAATTG	1 cut(s)	774
MflI	RGATCY	4 cut(s)	304, 401, 481, 1069
MluCI	AATT	8 cut(s)	365, 509, 735, 774, 825, 954, 1020, 1041
MlyI	GAGTC	4 cut(s)	80, 398, 683, 907
MmeI	TCCRAC	2 cut(s)	117, 970
MseI	TTAA	3 cut(s)	318, 518, 1065
MslI	CAYNNNNRTG	3 cut(s)	222, 711, 883
MspA1I	CMGCKG	1 cut(s)	788
MspI	CCGG	3 cut(s)	12, 55, 300
MspR9I	CCNGG	4 cut(s)	12, 301, 749, 1011
MunI	CAATTG	1 cut(s)	774
MvaI	CCWGG	2 cut(s)	749, 1011
MwoI	GCNNNNNNNGC	5 cut(s)	21, 77, 144, 153, 990
NciI	CCSGG	2 cut(s)	12, 301
NdeII	GATC	7 cut(s)	304, 401, 481, 571, 619, 646, 1069
NlaIII	CATG	6 cut(s)	534, 710, 716, 770, 888, 964
NlaIV	GGNNCC	3 cut(s)	294, 306, 483
NmuCI	GTSAC	2 cut(s)	925, 974
NsbI	TGCGCA	1 cut(s)	535
NspI	RCATGY	3 cut(s)	534, 710, 888
PaeI	GCATGC	1 cut(s)	534
PagI	TCATGA	1 cut(s)	712
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	5 cut(s)	172, 358, 379, 545, 730
PkrI	GCNGC	5 cut(s)	17, 137, 439, 784, 787
PleI	GAGTC	4 cut(s)	80, 397, 683, 907
PpsI	GAGTC	4 cut(s)	80, 397, 683, 907
Psp6I	CCWGG	2 cut(s)	747, 1009
PspEI	GGTNACC	1 cut(s)	986
PspGI	CCWGG	2 cut(s)	747, 1009
PspN4I	GGNNCC	3 cut(s)	294, 306, 483
PspPI	GGNCC	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	788
PsuI	RGATCY	4 cut(s)	304, 401, 481, 1069
PvuII	CAGCTG	1 cut(s)	788
RsaI	GTAC	3 cut(s)	277, 762, 898
RsaNI	GTAC	3 cut(s)	276, 761, 897
RseI	CAYNNNNRTG	3 cut(s)	222, 711, 883
SalI	GTCGAC	1 cut(s)	47
SaqAI	TTAA	3 cut(s)	318, 518, 1065
SatI	GCNGC	5 cut(s)	16, 136, 438, 783, 786
Sau3AI	GATC	7 cut(s)	304, 401, 481, 571, 619, 646, 1069
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	4 cut(s)	80, 398, 683, 907
ScrFI	CCNGG	4 cut(s)	12, 301, 749, 1011
SfaNI	GCATC	3 cut(s)	303, 731, 974
SfcI	CTRYAG	1 cut(s)	501
SgrDI	CGTCGACG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	3 cut(s)	222, 711, 883
SphI	GCATGC	1 cut(s)	534
Sse9I	AATT	8 cut(s)	365, 509, 735, 774, 825, 954, 1020, 1041
SsiI	CCGC	8 cut(s)	78, 135, 201, 215, 283, 888, 984, 991
SspMI	CTAG	1 cut(s)	674
StyD4I	CCNGG	4 cut(s)	10, 299, 747, 1009
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	2 cut(s)	169, 415
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	7 cut(s)	48, 66, 114, 207, 649, 844, 916
TasI	AATT	8 cut(s)	365, 509, 735, 774, 825, 954, 1020, 1041
TatI	WGTACW	1 cut(s)	896
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	5 cut(s)	172, 358, 379, 545, 730
Tru1I	TTAA	3 cut(s)	318, 518, 1065
Tru9I	TTAA	3 cut(s)	318, 518, 1065
TscAI	CASTG	3 cut(s)	172, 496, 675
TseFI	GTSAC	2 cut(s)	925, 974
TseI	GCWGC	4 cut(s)	15, 437, 782, 785
Tsp45I	GTSAC	2 cut(s)	925, 974
TspDTI	ATGAA	1 cut(s)	550
TspRI	CASTG	3 cut(s)	172, 496, 675
VpaK11BI	GGWCC	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	1029
XapI	RAATTY	2 cut(s)	825, 1020
XceI	RCATGY	3 cut(s)	534, 710, 888
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	674
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.