Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007869

Physical Location & Seq

Genomic Coordinates Reverse (-)

25201404 .. 25204288

Gene Structure 2885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g23280.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTTTGTCACCAACATTCCATATTTTCAAGAAGTAATTGTCATGGCATCCACTTGTGACGCCTGTGGTTACCGCAATTCTGAGTTGAAGCCTGGTGGACGAGTTCCTGAGAAAGGGAAGAAAATTACTCTTCGTGTGAAGAATGTTAAGGATCTTAGTCGTGATGTAATAAAGTCCGATACAGCGAGCGTGATAATTCCAGAAATTGAGTTGGAGCTGGCTAGTGGCACTCTGGGAGGGGTTGTTACAACTATTGAAGGCTTGATAATGAAAATTAGTGAAAGTCTTGAAAGAGTGCATGGATTTAGTTTTGGGGACAGTCTTGACGAGAATAAGAGAAGCAAGTGGCTAAAGTTTCATACAAGCCTAAAAAAGCTTCTTTGTTTAGAAGAGCCTTGGACTTTAATTCTTGATGATGCATTGGCTAATTCTTTTATTGCACCGGCAACTGACGATATAAAAGATGACCAGCAGTTGATGTTTGAGGAATACGAGAGGTCATGGGAGCAAAACGAAGAATTGGGTCTGAATGACATTGACACCTCTTCCGCGGATGCTGCTTACGATTTGAAGGATACCGCAGTGACCGAGCAGAAGTCCGGGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

203

Amino Acids

22.53

Weight (kDa)

4.63

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22480 AT5G37340 AT5G37340 AT5G37340 AT5G37340
fragaria_vesca	FvH4_3g12070 FvH4_3g12070 FvH4_3g12070
malus_domestica	MD05G1254800.v1.1 MD10G1234900.v1.1
prunus_persica	Prupe.4G109100_v2.0.a1
pyrus_communis	pycom05g23280 pycom10g19670
rosa_chinensis	RchiOBHm_Chr5g0019781
rosa_laevigata	RLG00000032469
rosa_multiflora	Rmu_ssc0000062.1_g000029
rosa_roxburghii	Rroxscaffold_1G00058350
rosa_rugosa	Rorug05G0054000
rosa_samantha	Rh2AG311200 Rh5AG144400 Rh5BG143100 Rh5CG154900 Rh5DG143400
rosa_wichuraiana	Rw5G012770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	551
AciI	CCGC	4 cut(s)	73, 549, 551, 579
AclWI	GGATC	1 cut(s)	159
AcyI	GRCGYC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	5 cut(s)	29, 88, 257, 290, 571
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	2 cut(s)	217, 376
AluI	AGCT	2 cut(s)	217, 376
AlwI	GGATC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	557
AsuC2I	CCSGG	1 cut(s)	601
BaeI	ACNNNNGTAYC	2 cut(s)	567, 600
BbvI	GCAGC	1 cut(s)	544
BciT130I	CCWGG	1 cut(s)	93
BciVI	GTATCC	1 cut(s)	568
BcnI	CCSGG	1 cut(s)	601
BfaI	CTAG	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	568
BisI	GCNGC	1 cut(s)	558
BlsI	GCNGC	1 cut(s)	559
Bme1390I	CCNGG	2 cut(s)	93, 601
BmrFI	CCNGG	2 cut(s)	93, 601
BmsI	GCATC	3 cut(s)	56, 406, 544
BpuMI	CCSGG	1 cut(s)	601
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	3 cut(s)	395, 549, 600
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	3 cut(s)	395, 549, 600
BseGI	GGATG	2 cut(s)	47, 559
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMII	CTCAG	2 cut(s)	72, 99
BseXI	GCAGC	1 cut(s)	544
Bsh1236I	CGCG	1 cut(s)	551
BsiSI	CCGG	2 cut(s)	443, 600
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	4 cut(s)	73, 549, 551, 579
BspCNI	CTCAG	2 cut(s)	73, 100
BspFNI	CGCG	1 cut(s)	551
BspPI	GGATC	1 cut(s)	159
BspQI	GCTCTTC	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	442
BssAI	RCCGGY	1 cut(s)	442
BssECI	CCNNGG	3 cut(s)	395, 549, 600
BssMI	GATC	1 cut(s)	151
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	3 cut(s)	135, 384, 550
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	2 cut(s)	187, 219
BstDEI	CTNAG	3 cut(s)	81, 108, 155
BstDSI	CCRYGG	1 cut(s)	549
BstEII	GGTNACC	1 cut(s)	68
BstENI	CCTNNNNNAGG	1 cut(s)	111
BstF5I	GGATG	2 cut(s)	47, 559
BstFNI	CGCG	1 cut(s)	551
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	557
BstNI	CCWGG	1 cut(s)	93
BstPI	GGTNACC	1 cut(s)	68
BstSCI	CCNGG	2 cut(s)	91, 599
BstUI	CGCG	1 cut(s)	551
BstV1I	GCAGC	1 cut(s)	544
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuI	GTATCC	1 cut(s)	568
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	47, 559
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	2 cut(s)	187, 219
Cfr10I	RCCGGY	1 cut(s)	442
Cfr42I	CCGCGG	1 cut(s)	552
CseI	GACGC	1 cut(s)	68
CviAII	CATG	3 cut(s)	43, 299, 501
CviJI	RGCY	9 cut(s)	91, 217, 221, 261, 349, 366, 376, 394, 425
CviKI_1	RGCY	9 cut(s)	91, 217, 221, 261, 349, 366, 376, 394, 425
DdeI	CTNAG	3 cut(s)	81, 108, 155
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eam1104I	CTCTTC	3 cut(s)	135, 384, 550
EarI	CTCTTC	3 cut(s)	135, 384, 550
Eco130I	CCWWGG	1 cut(s)	395
Eco91I	GGTNACC	1 cut(s)	68
EcoNI	CCTNNNNNAGG	1 cut(s)	111
EcoO65I	GGTNACC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	395
EcoT22I	ATGCAT	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	3 cut(s)	46, 302, 504
FaiI	YATR	6 cut(s)	22, 44, 300, 360, 458, 502
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	3 cut(s)	42, 298, 500
Fnu4HI	GCNGC	1 cut(s)	558
FokI	GGATG	2 cut(s)	34, 566
Fsp4HI	GCNGC	1 cut(s)	558
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	1 cut(s)	558
HapII	CCGG	2 cut(s)	443, 600
HgaI	GACGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	46, 302, 504
HindIII	AAGCTT	1 cut(s)	374
HpaII	CCGG	2 cut(s)	443, 600
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	3 cut(s)	82, 178, 528
Hpy188III	TCNNGA	7 cut(s)	29, 107, 161, 200, 287, 323, 410
Hpy8I	GTNNAC	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	251, 565
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4V	TGCA	3 cut(s)	298, 419, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	557
HpyF3I	CTNAG	3 cut(s)	81, 108, 155
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	46, 302, 504
KspI	CCGCGG	1 cut(s)	552
Kzo9I	GATC	1 cut(s)	151
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	2 cut(s)	214, 505
LpnPI	CCDG	9 cut(s)	76, 78, 105, 120, 203, 213, 218, 456, 482
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	3 cut(s)	56, 406, 544
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	5 cut(s)	7, 56, 68, 244, 583
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	6 cut(s)	122, 130, 151, 401, 527, 537
MflI	RGATCY	1 cut(s)	151
MluCI	AATT	9 cut(s)	36, 76, 123, 195, 204, 273, 405, 427, 518
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	4 cut(s)	230, 478, 489, 553
Mph1103I	ATGCAT	1 cut(s)	421
MseI	TTAA	2 cut(s)	147, 404
MspA1I	CMGCKG	1 cut(s)	551
MspI	CCGG	2 cut(s)	443, 600
MspR9I	CCNGG	2 cut(s)	93, 601
MvaI	CCWGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	551
MwoI	GCNNNNNNNGC	1 cut(s)	557
NciI	CCSGG	1 cut(s)	601
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	3 cut(s)	46, 302, 504
NmuCI	GTSAC	3 cut(s)	7, 56, 583
NsiI	ATGCAT	1 cut(s)	421
PciSI	GCTCTTC	1 cut(s)	384
PkrI	GCNGC	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	91
PspEI	GGTNACC	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	151
SacII	CCGCGG	1 cut(s)	552
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	147, 404
SatI	GCNGC	1 cut(s)	558
Sau3AI	GATC	1 cut(s)	151
ScrFI	CCNGG	2 cut(s)	93, 601
SetI	ASST	4 cut(s)	219, 378, 500, 545
SfaNI	GCATC	3 cut(s)	56, 406, 544
Sfr303I	CCGCGG	1 cut(s)	552
SgrBI	CCGCGG	1 cut(s)	552
Sse9I	AATT	9 cut(s)	36, 76, 123, 195, 204, 273, 405, 427, 518
SsiI	CCGC	4 cut(s)	73, 549, 551, 579
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	91, 599
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	1 cut(s)	320
TaqII	GACCGA	1 cut(s)	602
TasI	AATT	9 cut(s)	36, 76, 123, 195, 204, 273, 405, 427, 518
Tru1I	TTAA	2 cut(s)	147, 404
Tru9I	TTAA	2 cut(s)	147, 404
TscAI	CASTG	1 cut(s)	588
TseFI	GTSAC	3 cut(s)	7, 56, 583
TseI	GCWGC	1 cut(s)	557
Tsp45I	GTSAC	3 cut(s)	7, 56, 583
TspDTI	ATGAA	2 cut(s)	284, 347
TspRI	CASTG	1 cut(s)	588
XagI	CCTNNNNNAGG	1 cut(s)	111
XspI	CTAG	1 cut(s)	222
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.