AT5G37340

zinc finger

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
14787247 .. 14792818
5572 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G37340.2

Sequence Viewer

Length: 1482 bp
ATGGACAACGGGAATGATCAACAAATCGATGTTGGCTCGGTAGTTGAAGCAGTTTCGGCTGATCATTCCTTTGGTGCTCCTCTCTATGTAGTTGAGAGTATGTGTATGCGCTGCGGTGAAAATGGAACAACTAGATTTCTATTGACCTTAATACCTCACTTCAGAAAGGTCTTAATATCTGCATTTGAATGTCCGCATTGCGGAGAAAGGAATAATGAAGTTCAGTTTGCTGGCGAGATTCAACCCCGAGGATGCTCTTACCATCTAGAGGTTTCAGCTGGTGATGTGAAGACATTTGACCGGCAAGTTGTAAAATCTGAATCAGCCACTATTAAGATTCCTGAACTGGATTTTGAGATTCCACCAGAGGCCCAAAGTGGTAGTTTATCTACGGTGGAAGGGATACTATCCAGGGCTGCTGATGAACTGAGTGCCCTTCAAGAAGAACGCAGGAAAGTGGATCCTAAAACAGCTGAAGCAATAGACCAATTCTTGTCTAAACTGAGAGCTTGTGCTAAAGCAGAGACATCATTCACCTTCATTTTGGATGATCCTGCTGGAAACAGTTTCATTGAGAACCCACATGCTCCATCATTAGATCCCTCACTAACGATCAAGTTCTATGAGCGTACACCCGAACAACAAGCAACTCTTGGATATCTTACTAACCCATCTCAGACTGGACAGTCAGAAAGAAGCCTGGGAACACCTTCTACTCAAACAACTGCTCTACCTCATGGAACTATCGGAGCAACAGCTGGTCATCGGGCTATTGCGCAGAGTAATAGCACTGATATTTCAGATAACTTGTTTAGATACTCTGCGCCTGAAGAGGTGATGACTTTCCCTTCAACTTGCGGAGCATGTACAAAGCTGTGTGAGACACGGATGTTCGTTACTAAAATCCCGTATTTTCAGGAGGTTATCGTCATGGCATCTACATGTGATGATTGTGGCTATCGGAATTCTGAGTTGAAGCCTGGTGGTGCAATTCCTGAAAAGGGAAAGAAAATTACGCTCTCTGTGAAGAACATAACTGACCTTAGCCGCGATGTTATCAAGTCAGACACTGCAGGAGTGAAAATCCCAGAACTTGATTTGGAGCTAGCTGGTGGTACACTTGGTGGAATGGTAACAACAGTGGAAGGGTTGGTCACACAGATCAGAGAAAGCTTAGCGAGAGTCCATGGATTCACTTTTGGTGACAGTTTGGAGCAGAGTAAGATTAACAAGTGGAAAGAATTTGGATCCAGACTAACTAAGCTTCTAAGCTTAGAACAGGAATGGACATTGATTCTTGATGACGAATTAGCGAATTCTTTTATTTCACCAGTAACAGATGATATCAAAGATGATCATCAGCTCACATTTGAAGAGTACGAGAGATCATGGGAGCAAAACGAGGAGTTGGGTCTCAACGACATTGATACTTCTTCAGCTGATGCTGCTTATGAGTCCACAGAGCCAACTAAATTACCTTAA

Protein Analysis

493

Amino Acids

54.03

Weight (kDa)

4.69

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_ZPR1 PF03367 31 - 82 5.9e-23 ZPR1 zinc-finger domain
jr-ZPR1 PF22794 99 - 220 5.5e-45 ZPR1 jelly-roll domain
Zn_ribbon_ZPR1 PF03367 278 - 338 4.5e-16 ZPR1 zinc-finger domain
jr-ZPR1 PF22794 352 - 477 5e-37 ZPR1 jelly-roll domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 685
Acc16I TGCGCA 1 cut(s) 777
AccII CGCG 1 cut(s) 1050
AciI CCGC 5 cut(s) 114, 194, 201, 858, 1048
AclWI GGATC 6 cut(s) 455, 468, 545, 593, 1242, 1255
AcsI RAATTY 3 cut(s) 964, 1241, 1315
AcuI CTGAAG 4 cut(s) 145, 495, 849, 1419
AdeI CACNNNGTG 1 cut(s) 1124
AfaI GTAC 4 cut(s) 631, 868, 1117, 1379
AfiI CCNNNNNNNGG 3 cut(s) 200, 268, 1001
AflIII ACRYGT 1 cut(s) 941
AgsI TTSAA 7 cut(s) 47, 188, 242, 440, 852, 976, 1373
AjnI CCWGG 3 cut(s) 410, 699, 979
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 3 cut(s) 518, 875, 1418
AlwI GGATC 6 cut(s) 455, 468, 545, 593, 1242, 1255
AlwNI CAGNNNCTG 1 cut(s) 1070
Ama87I CYCGRG 1 cut(s) 246
AoxI GGCC 1 cut(s) 369
ApeKI GCWGC 3 cut(s) 111, 416, 1445
ApoI RAATTY 3 cut(s) 964, 1241, 1315
Asp700I GAANNNNTTC 1 cut(s) 709
AspLEI GCGC 3 cut(s) 111, 778, 826
AspS9I GGNCC 1 cut(s) 370
AsuHPI GGTGA 6 cut(s) 128, 293, 526, 847, 1214, 1320
AsuNHI GCTAGC 1 cut(s) 1105
AvaI CYCGRG 1 cut(s) 246
BaeGI GKGCMC 1 cut(s) 436
BamHI GGATCC 2 cut(s) 460, 1247
BbsI GAAGAC 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 3 cut(s) 98, 403, 1432
BccI CCATC 3 cut(s) 270, 598, 679
BciT130I CCWGG 3 cut(s) 412, 701, 981
BciVI GTATCC 1 cut(s) 396
BclI TGATCA 3 cut(s) 16, 61, 1354
BcoDI GTCTC 3 cut(s) 518, 875, 1418
BfaI CTAG 3 cut(s) 132, 266, 1106
BfmI CTRYAG 1 cut(s) 1071
BfuI GTATCC 1 cut(s) 396
BisI GCNGC 4 cut(s) 112, 417, 1048, 1446
BlpI GCTNAGC 1 cut(s) 1174
BlsI GCNGC 4 cut(s) 113, 418, 1049, 1447
Bme1390I CCNGG 3 cut(s) 412, 701, 981
BmeT110I CYCGRG 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 2 cut(s) 462, 1249
BmrFI CCNGG 3 cut(s) 412, 701, 981
BmsI GCATC 3 cut(s) 242, 944, 1432
BmtI GCTAGC 1 cut(s) 1109
BpiI GAAGAC 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 1043
Bpu1102I GCTNAGC 1 cut(s) 1174
Bsa29I ATCGAT 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 1356
BsaI GGTCTC 1 cut(s) 1418
BsaJI CCNNGG 4 cut(s) 247, 411, 700, 1186
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 268, 1001
Bse118I RCCGGY 1 cut(s) 300
Bse1I ACTGG 3 cut(s) 351, 685, 1331
Bse3DI GCAATG 1 cut(s) 196
Bse8I GATNNNNATC 1 cut(s) 1356
BseBI CCWGG 3 cut(s) 412, 701, 981
BseCI ATCGAT 1 cut(s) 27
BseDI CCNNGG 4 cut(s) 247, 411, 700, 1186
BseGI GGATG 3 cut(s) 257, 553, 894
BseJI GATNNNNATC 1 cut(s) 1356
BseLI CCNNNNNNNGG 3 cut(s) 200, 268, 1001
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 4 cut(s) 419, 494, 689, 960
BseNI ACTGG 3 cut(s) 351, 685, 1331
BseRI GAGGAG 2 cut(s) 69, 1418
BseSI GKGCMC 1 cut(s) 436
BseXI GCAGC 3 cut(s) 98, 403, 1432
Bsh1236I CGCG 1 cut(s) 1050
BshFI GGCC 1 cut(s) 371
BshVI ATCGAT 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 79
BsiHKCI CYCGRG 1 cut(s) 246
BsiSI CCGG 1 cut(s) 301
BslI CCNNNNNNNGG 3 cut(s) 200, 268, 1001
BsmAI GTCTC 3 cut(s) 518, 875, 1418
BsnI GGCC 1 cut(s) 371
Bso31I GGTCTC 1 cut(s) 1418
BsoBI CYCGRG 1 cut(s) 246
Bsp1286I GDGCHC 2 cut(s) 79, 436
Bsp1407I TGTACA 1 cut(s) 866
Bsp1720I GCTNAGC 1 cut(s) 1174
Bsp19I CCATGG 1 cut(s) 1186
BspACI CCGC 5 cut(s) 114, 194, 201, 858, 1048
BspANI GGCC 1 cut(s) 371
BspCNI CTCAG 4 cut(s) 420, 495, 688, 961
BspDI ATCGAT 1 cut(s) 27
BspFNI CGCG 1 cut(s) 1050
BspLI GGNNCC 2 cut(s) 462, 1249
BspMAI CTGCAG 1 cut(s) 1075
BspOI GCTAGC 1 cut(s) 1109
BspPI GGATC 6 cut(s) 455, 468, 545, 593, 1242, 1255
BspTNI GGTCTC 1 cut(s) 1418
BsrDI GCAATG 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 300
BsrGI TGTACA 1 cut(s) 866
BsrI ACTGG 3 cut(s) 351, 685, 1331
BssAI RCCGGY 1 cut(s) 300
BssECI CCNNGG 4 cut(s) 247, 411, 700, 1186
BssT1I CCWWGG 1 cut(s) 1186
Bst2UI CCWGG 3 cut(s) 412, 701, 981
Bst4CI ACNGT 5 cut(s) 394, 566, 687, 1141, 1208
Bst6I CTCTTC 2 cut(s) 825, 1368
BstAUI TGTACA 1 cut(s) 866
BstC8I GCNNGC 2 cut(s) 232, 1107
BstDEI CTNAG 9 cut(s) 428, 503, 675, 969, 1043, 1174, 1260, 1268, 1273
BstDSI CCRYGG 1 cut(s) 1186
BstF5I GGATG 3 cut(s) 257, 553, 894
BstFNI CGCG 1 cut(s) 1050
BstHHI GCGC 3 cut(s) 111, 778, 826
BstMAI GTCTC 3 cut(s) 518, 875, 1418
BstMWI GCNNNNNNNGC 2 cut(s) 56, 1445
BstNI CCWGG 3 cut(s) 412, 701, 981
BstNSI RCATGY 3 cut(s) 587, 867, 945
BstSCI CCNGG 3 cut(s) 410, 699, 979
BstSFI CTRYAG 1 cut(s) 1071
BstSLI GKGCMC 1 cut(s) 436
BstUI CGCG 1 cut(s) 1050
BstV1I GCAGC 3 cut(s) 98, 403, 1432
BstV2I GAAGAC 1 cut(s) 296
BstX2I RGATCY 3 cut(s) 460, 598, 1247
BstYI RGATCY 3 cut(s) 460, 598, 1247
Bsu15I ATCGAT 1 cut(s) 27
BsuI GTATCC 1 cut(s) 396
BsuRI GGCC 1 cut(s) 371
BsuTUI ATCGAT 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 1186
BtgZI GCGATG 1 cut(s) 1065
BtsCI GGATG 3 cut(s) 257, 553, 894
BtsI GCAGTG 1 cut(s) 1068
BtsIMutI CAGTG 3 cut(s) 789, 1068, 1146
Cac8I GCNNGC 2 cut(s) 232, 1107
CaiI CAGNNNCTG 1 cut(s) 1070
CfoI GCGC 3 cut(s) 111, 778, 826
Cfr10I RCCGGY 1 cut(s) 300
Cfr13I GGNCC 1 cut(s) 370
ClaI ATCGAT 1 cut(s) 27
Csp6I GTAC 4 cut(s) 630, 867, 1116, 1378
CviAII CATG 7 cut(s) 584, 737, 864, 931, 942, 1187, 1389
CviQI GTAC 4 cut(s) 630, 867, 1116, 1378
DdeI CTNAG 9 cut(s) 428, 503, 675, 969, 1043, 1174, 1260, 1268, 1273
DraIII CACNNNGTG 1 cut(s) 1124
DrdI GACNNNNNNGTC 1 cut(s) 685
DseDI GACNNNNNNGTC 1 cut(s) 685
Eam1104I CTCTTC 2 cut(s) 825, 1368
EarI CTCTTC 2 cut(s) 825, 1368
Eco130I CCWWGG 1 cut(s) 1186
Eco31I GGTCTC 1 cut(s) 1418
Eco32I GATATC 2 cut(s) 659, 1345
Eco57I CTGAAG 4 cut(s) 145, 495, 849, 1419
Eco88I CYCGRG 1 cut(s) 246
EcoRI GAATTC 2 cut(s) 964, 1315
EcoRII CCWGG 3 cut(s) 410, 699, 979
EcoRV GATATC 2 cut(s) 659, 1345
EcoT14I CCWWGG 1 cut(s) 1186
ErhI CCWWGG 1 cut(s) 1186
FaeI CATG 7 cut(s) 587, 740, 867, 934, 945, 1190, 1392
FalI AAGNNNNNCTT 2 cut(s) 636, 668
FatI CATG 7 cut(s) 583, 736, 863, 930, 941, 1186, 1388
FbaI TGATCA 3 cut(s) 16, 61, 1354
Fnu4HI GCNGC 4 cut(s) 112, 417, 1048, 1446
FokI GGATG 3 cut(s) 264, 560, 901
Fsp4HI GCNGC 4 cut(s) 112, 417, 1048, 1446
FspBI CTAG 3 cut(s) 132, 266, 1106
FspI TGCGCA 1 cut(s) 777
GlaI GCGC 3 cut(s) 110, 777, 825
GluI GCNGC 4 cut(s) 112, 417, 1048, 1446
HaeIII GGCC 1 cut(s) 371
HapII CCGG 1 cut(s) 301
HhaI GCGC 3 cut(s) 111, 778, 826
Hin1II CATG 7 cut(s) 587, 740, 867, 934, 945, 1190, 1392
Hin6I GCGC 3 cut(s) 109, 776, 824
HinP1I GCGC 3 cut(s) 109, 776, 824
HindIII AAGCTT 3 cut(s) 1171, 1262, 1270
HinfI GANTC 8 cut(s) 238, 320, 337, 358, 1182, 1191, 1294, 1454
HpaII CCGG 1 cut(s) 301
HphI GGTGA 6 cut(s) 128, 293, 526, 847, 1214, 1320
Hpy166II GTNNAC 3 cut(s) 632, 1118, 1458
Hpy188III TCNNGA 7 cut(s) 266, 341, 440, 917, 995, 1251, 1298
Hpy8I GTNNAC 3 cut(s) 632, 1118, 1458
HpyAV CCTTC 6 cut(s) 392, 446, 547, 720, 858, 1139
HpyCH4III ACNGT 5 cut(s) 394, 566, 687, 1141, 1208
HpyCH4V TGCA 3 cut(s) 182, 989, 1073
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 1445
HpyF3I CTNAG 9 cut(s) 428, 503, 675, 969, 1043, 1174, 1260, 1268, 1273
Hsp92II CATG 7 cut(s) 587, 740, 867, 934, 945, 1190, 1392
HspAI GCGC 3 cut(s) 109, 776, 824
Ksp22I TGATCA 3 cut(s) 16, 61, 1354
LmnI GCTCC 7 cut(s) 82, 592, 749, 860, 1102, 1213, 1393
Lsp1109I GCAGC 3 cut(s) 98, 403, 1432
LweI GCATC 3 cut(s) 242, 944, 1432
MaeI CTAG 3 cut(s) 132, 266, 1106
MaeIII GTNAC 5 cut(s) 895, 1132, 1153, 1202, 1333
MboII GAAGA 6 cut(s) 301, 455, 842, 1039, 1385, 1425
MflI RGATCY 3 cut(s) 460, 598, 1247
MhlI GDGCHC 2 cut(s) 79, 436
MluCI AATT 8 cut(s) 488, 964, 990, 1011, 1241, 1307, 1315, 1472
MlyI GAGTC 2 cut(s) 1191, 1463
MroXI GAANNNNTTC 1 cut(s) 709
MseI TTAA 5 cut(s) 149, 173, 333, 1227, 1480
MslI CAYNNNNRTG 2 cut(s) 187, 940
MspA1I CMGCKG 4 cut(s) 278, 473, 758, 1439
MspI CCGG 1 cut(s) 301
MspR9I CCNGG 3 cut(s) 412, 701, 981
MvaI CCWGG 3 cut(s) 412, 701, 981
MvnI CGCG 1 cut(s) 1050
MwoI GCNNNNNNNGC 2 cut(s) 56, 1445
NcoI CCATGG 1 cut(s) 1186
NheI GCTAGC 1 cut(s) 1105
NlaIII CATG 7 cut(s) 587, 740, 867, 934, 945, 1190, 1392
NlaIV GGNNCC 2 cut(s) 462, 1249
NmuCI GTSAC 2 cut(s) 1153, 1202
NsbI TGCGCA 1 cut(s) 777
NspI RCATGY 3 cut(s) 587, 867, 945
PciI ACATGT 1 cut(s) 941
PdmI GAANNNNTTC 1 cut(s) 709
PfeI GAWTC 6 cut(s) 238, 320, 337, 358, 1191, 1294
PkrI GCNGC 4 cut(s) 113, 418, 1049, 1447
PleI GAGTC 2 cut(s) 1190, 1462
PpsI GAGTC 2 cut(s) 1190, 1462
PscI ACATGT 1 cut(s) 941
Psp6I CCWGG 3 cut(s) 410, 699, 979
PspGI CCWGG 3 cut(s) 410, 699, 979
PspN4I GGNNCC 2 cut(s) 462, 1249
PspPI GGNCC 1 cut(s) 370
PsrI GAACNNNNNNTAC 2 cut(s) 697, 729
PstI CTGCAG 1 cut(s) 1075
PstNI CAGNNNCTG 1 cut(s) 1070
PsuI RGATCY 3 cut(s) 460, 598, 1247
PvuII CAGCTG 4 cut(s) 278, 473, 758, 1439
RsaI GTAC 4 cut(s) 631, 868, 1117, 1379
RsaNI GTAC 4 cut(s) 630, 867, 1116, 1378
RseI CAYNNNNRTG 2 cut(s) 187, 940
SaqAI TTAA 5 cut(s) 149, 173, 333, 1227, 1480
SatI GCNGC 4 cut(s) 112, 417, 1048, 1446
Sau96I GGNCC 1 cut(s) 370
SchI GAGTC 2 cut(s) 1191, 1463
ScrFI CCNGG 3 cut(s) 412, 701, 981
SduI GDGCHC 2 cut(s) 79, 436
SfaNI GCATC 3 cut(s) 242, 944, 1432
SfcI CTRYAG 1 cut(s) 1071
SmiMI CAYNNNNRTG 2 cut(s) 187, 940
Sse9I AATT 8 cut(s) 488, 964, 990, 1011, 1241, 1307, 1315, 1472
SsiI CCGC 5 cut(s) 114, 194, 201, 858, 1048
SspMI CTAG 3 cut(s) 132, 266, 1106
StyD4I CCNGG 3 cut(s) 410, 699, 979
StyI CCWWGG 1 cut(s) 1186
TaaI ACNGT 5 cut(s) 394, 566, 687, 1141, 1208
TaqI TCGA 1 cut(s) 27
TasI AATT 8 cut(s) 488, 964, 990, 1011, 1241, 1307, 1315, 1472
TatI WGTACW 1 cut(s) 866
TauI GCSGC 1 cut(s) 1050
TfiI GAWTC 6 cut(s) 238, 320, 337, 358, 1191, 1294
Tru1I TTAA 5 cut(s) 149, 173, 333, 1227, 1480
Tru9I TTAA 5 cut(s) 149, 173, 333, 1227, 1480
TscAI CASTG 3 cut(s) 796, 1075, 1146
TseFI GTSAC 2 cut(s) 1153, 1202
TseI GCWGC 3 cut(s) 111, 416, 1445
Tsp45I GTSAC 2 cut(s) 1153, 1202
TspDTI ATGAA 4 cut(s) 231, 438, 529, 559
TspGWI ACGGA 1 cut(s) 901
TspRI CASTG 3 cut(s) 796, 1075, 1146
XapI RAATTY 3 cut(s) 964, 1241, 1315
XbaI TCTAGA 1 cut(s) 265
XceI RCATGY 3 cut(s) 587, 867, 945
XmnI GAANNNNTTC 1 cut(s) 709
XspI CTAG 3 cut(s) 132, 266, 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.