Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007869

Physical Location & Seq

Genomic Coordinates Reverse (-)

22702826 .. 22706450

Gene Structure 3625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g19670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGAATTACAAGCACTTCAAGAAGAGCGCAAGAAAGTGGATCGCTCAGACTGCTGAAGCATTAGACCAATTTTTGTTAAAGTTGAGAGCCTGTGCTACAGCAGACTTGTCCTTCACCTTCATCCTTGATGATCCAGCTGGAAACAGCTTTGTTGAGAACCTGTTTGCTCCATCCCCTGATCCATCATTGAGTATAAGGTTTTATGAGCGAACTCCAGAGCAACAAAAAACATTAGGGTATGTTGTTGATGCAGCATCAACAGAAGCAGTTAGCACTTCTGACCAAGTACAAAGAGTCCCACATGGCTCAATTGGAGCAGCAGCTGGTCATCGGGCCATTGCTCAGAGTAATAGTGCTGAAATTGCTGAATCTTTGTTTCGATACACAGCTCCAGAGGAGGTGATGACTTTCCCATCAACATGCGGAGGTTGTACTGCTCGGTGTGAAACTCGAATGTTTGTCACCCACATTCCATATTTTCAAGAGGTAATTGTCATGGCATCCACTTGTGACAATTGCGGTTACCGCAATTCTGAGTTGAAGCCTGGTGGACGAGTTCCTGAGAAAGGAAAGAAAATTATTCTTCGTGTGAAGAATGTTAAGGATCTTAGTCGTGATGTAATAAAGTCAGATACTGCGAGTGTAATAATTCCAGAAATTGAGTTGGAGCTGGCTAGTGGCACTCTGGGAGGGGTTGTTACAACTATTGAAGGCTTGATAATGAAAATTAGTGAAAGTCTTGAAAGAGTGCATGGCTTTAGTTTTGGAGACAGTATTGATGAGAATAAGAAAAGCAAGTGGCTAAATTTTCACACAAGCCTGAAAAAGCTTCTGTGTTTAGAAGAGCCTTGGACTTTAATTCTTGATGACGCATTGGCTAATTCTTTTATTGCACCGGCGACTGACGATATAAAAGATGACCATCAGTTGATGTTTGAGGATTACGAGAGGTCATGGGAGCAAAACGAAGAATTGGGTCTGAATGACATCGACACCTCTTCCGCTGATGCTGCTTACGATTTGAAAGATAGTGCAGTAACAGAGAAGTCGGCGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

353

Amino Acids

38.91

Weight (kDa)

4.95

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22480 AT5G37340 AT5G37340 AT5G37340 AT5G37340
fragaria_vesca	FvH4_3g12070 FvH4_3g12070 FvH4_3g12070
malus_domestica	MD05G1254800.v1.1 MD10G1234900.v1.1
prunus_persica	Prupe.4G109100_v2.0.a1
pyrus_communis	pycom05g23280 pycom10g19670
rosa_chinensis	RchiOBHm_Chr5g0019781
rosa_laevigata	RLG00000032469
rosa_multiflora	Rmu_ssc0000062.1_g000029
rosa_roxburghii	Rroxscaffold_1G00058350
rosa_rugosa	Rorug05G0054000
rosa_samantha	Rh2AG311200 Rh5AG144400 Rh5BG143100 Rh5CG154900 Rh5DG143400
rosa_wichuraiana	Rw5G012770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	423, 519, 526, 1002, 1052
AclWI	GGATC	4 cut(s)	47, 125, 173, 612
AcsI	RAATTY	1 cut(s)	805
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	2 cut(s)	288, 433
AfiI	CCNNNNNNNGG	1 cut(s)	566
AgsI	TTSAA	6 cut(s)	19, 482, 541, 710, 743, 1024
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	6 cut(s)	137, 147, 323, 389, 670, 829
AluI	AGCT	6 cut(s)	137, 147, 323, 389, 670, 829
Alw26I	GTCTC	1 cut(s)	762
AlwI	GGATC	4 cut(s)	47, 125, 173, 612
AlwNI	CAGNNNCTG	2 cut(s)	323, 635
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	4 cut(s)	251, 317, 320, 1010
ApoI	RAATTY	1 cut(s)	805
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	333
AsuHPI	GGTGA	3 cut(s)	106, 412, 454
BbvI	GCAGC	4 cut(s)	263, 329, 332, 997
BccI	CCATC	4 cut(s)	178, 190, 421, 930
BciT130I	CCWGG	1 cut(s)	546
BcoDI	GTCTC	1 cut(s)	762
BfaI	CTAG	1 cut(s)	675
BfmI	CTRYAG	1 cut(s)	96
BisI	GCNGC	4 cut(s)	252, 318, 321, 1011
BlsI	GCNGC	4 cut(s)	253, 319, 322, 1012
Bme1390I	CCNGG	1 cut(s)	546
BmgT120I	GGNCC	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	546
BmsI	GCATC	4 cut(s)	238, 263, 509, 997
BpmI	CTGGAG	2 cut(s)	198, 375
BsaBI	GATNNNNATC	1 cut(s)	921
BsaJI	CCNNGG	1 cut(s)	848
BsaXI	ACNNNNNCTCC	2 cut(s)	681, 711
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse118I	RCCGGY	1 cut(s)	895
Bse3DI	GCAATG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	921
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	1 cut(s)	848
BseGI	GGATG	3 cut(s)	120, 170, 500
BseJI	GATNNNNATC	1 cut(s)	921
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	4 cut(s)	59, 356, 525, 552
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	4 cut(s)	263, 329, 332, 997
BsgI	GTGCAG	1 cut(s)	1053
BshFI	GGCC	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	896
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	1 cut(s)	762
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	335
Bsp143I	GATC	4 cut(s)	39, 130, 178, 604
BspACI	CCGC	5 cut(s)	423, 519, 526, 1002, 1052
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	4 cut(s)	58, 355, 526, 553
BspPI	GGATC	4 cut(s)	47, 125, 173, 612
BspQI	GCTCTTC	2 cut(s)	17, 837
BsrDI	GCAATG	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	895
BssAI	RCCGGY	1 cut(s)	895
BssECI	CCNNGG	1 cut(s)	848
BssMI	GATC	4 cut(s)	39, 130, 178, 604
BssT1I	CCWWGG	1 cut(s)	848
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	1 cut(s)	773
Bst6I	CTCTTC	3 cut(s)	17, 837, 1003
BstC8I	GCNNGC	1 cut(s)	672
BstDEI	CTNAG	5 cut(s)	45, 342, 534, 561, 608
BstEII	GGTNACC	1 cut(s)	521
BstENI	CCTNNNNNAGG	1 cut(s)	564
BstF5I	GGATG	3 cut(s)	120, 170, 500
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	4 cut(s)	42, 133, 181, 607
BstMAI	GTCTC	1 cut(s)	762
BstMBI	GATC	4 cut(s)	39, 130, 178, 604
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 362, 525, 1010
BstNI	CCWGG	1 cut(s)	546
BstNSI	RCATGY	1 cut(s)	423
BstPI	GGTNACC	1 cut(s)	521
BstSCI	CCNGG	1 cut(s)	544
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	4 cut(s)	263, 329, 332, 997
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
BsuRI	GGCC	1 cut(s)	335
BtsCI	GGATG	3 cut(s)	120, 170, 500
Cac8I	GCNNGC	1 cut(s)	672
CaiI	CAGNNNCTG	2 cut(s)	323, 635
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	895
Cfr13I	GGNCC	1 cut(s)	333
CseI	GACGC	1 cut(s)	878
Csp6I	GTAC	2 cut(s)	287, 432
CviAII	CATG	5 cut(s)	302, 420, 496, 752, 954
CviQI	GTAC	2 cut(s)	287, 432
DdeI	CTNAG	5 cut(s)	45, 342, 534, 561, 608
DpnI	GATC	4 cut(s)	41, 132, 180, 606
DpnII	GATC	4 cut(s)	39, 130, 178, 604
Eam1104I	CTCTTC	3 cut(s)	17, 837, 1003
EarI	CTCTTC	3 cut(s)	17, 837, 1003
Eco130I	CCWWGG	1 cut(s)	848
Eco57I	CTGAAG	1 cut(s)	75
Eco91I	GGTNACC	1 cut(s)	521
EcoNI	CCTNNNNNAGG	1 cut(s)	564
EcoO65I	GGTNACC	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	848
ErhI	CCWWGG	1 cut(s)	848
FaeI	CATG	5 cut(s)	305, 423, 499, 755, 957
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	5 cut(s)	301, 419, 495, 751, 953
Fnu4HI	GCNGC	4 cut(s)	252, 318, 321, 1011
FokI	GGATG	3 cut(s)	107, 157, 487
Fsp4HI	GCNGC	4 cut(s)	252, 318, 321, 1011
FspBI	CTAG	1 cut(s)	675
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	4 cut(s)	252, 318, 321, 1011
GsuI	CTGGAG	2 cut(s)	198, 375
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	1 cut(s)	896
HgaI	GACGC	1 cut(s)	878
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	5 cut(s)	305, 423, 499, 755, 957
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	827
HinfI	GANTC	2 cut(s)	294, 368
HpaII	CCGG	1 cut(s)	896
HphI	GGTGA	3 cut(s)	106, 412, 454
Hpy166II	GTNNAC	1 cut(s)	551
Hpy188I	TCNGA	6 cut(s)	48, 280, 345, 535, 631, 981
Hpy188III	TCNNGA	9 cut(s)	19, 215, 392, 482, 560, 614, 653, 740, 863
Hpy8I	GTNNAC	1 cut(s)	551
HpyAV	CCTTC	3 cut(s)	121, 127, 704
HpyCH4III	ACNGT	1 cut(s)	773
HpyCH4V	TGCA	4 cut(s)	251, 751, 893, 1034
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 362, 525, 1010
HpyF3I	CTNAG	5 cut(s)	45, 342, 534, 561, 608
Hsp92II	CATG	5 cut(s)	305, 423, 499, 755, 957
HspAI	GCGC	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	39, 130, 178, 604
LguI	GCTCTTC	2 cut(s)	17, 837
LmnI	GCTCC	5 cut(s)	172, 314, 394, 667, 958
Lsp1109I	GCAGC	4 cut(s)	263, 329, 332, 997
LweI	GCATC	4 cut(s)	238, 263, 509, 997
MaeI	CTAG	1 cut(s)	675
MaeIII	GTNAC	5 cut(s)	460, 509, 521, 697, 1036
MalI	GATC	4 cut(s)	41, 132, 180, 606
MboI	GATC	4 cut(s)	39, 130, 178, 604
MboII	GAAGA	6 cut(s)	34, 575, 604, 854, 980, 990
MfeI	CAATTG	2 cut(s)	309, 514
MflI	RGATCY	1 cut(s)	604
MlyI	GAGTC	1 cut(s)	303
MmeI	TCCRAC	1 cut(s)	645
MnlI	CCTC	8 cut(s)	388, 391, 419, 478, 683, 931, 942, 1006
MseI	TTAA	3 cut(s)	77, 600, 857
MslI	CAYNNNNRTG	1 cut(s)	418
MspA1I	CMGCKG	3 cut(s)	137, 323, 1004
MspI	CCGG	1 cut(s)	896
MspR9I	CCNGG	1 cut(s)	546
MunI	CAATTG	2 cut(s)	309, 514
MvaI	CCWGG	1 cut(s)	546
MwoI	GCNNNNNNNGC	4 cut(s)	50, 362, 525, 1010
NdeII	GATC	4 cut(s)	39, 130, 178, 604
NlaIII	CATG	5 cut(s)	305, 423, 499, 755, 957
NmuCI	GTSAC	2 cut(s)	460, 509
NspI	RCATGY	1 cut(s)	423
PciSI	GCTCTTC	2 cut(s)	17, 837
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	4 cut(s)	253, 319, 322, 1012
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	544
PspEI	GGTNACC	1 cut(s)	521
PspGI	CCWGG	1 cut(s)	544
PspPI	GGNCC	1 cut(s)	333
PstNI	CAGNNNCTG	2 cut(s)	323, 635
PsuI	RGATCY	1 cut(s)	604
PvuII	CAGCTG	2 cut(s)	137, 323
RsaI	GTAC	2 cut(s)	288, 433
RsaNI	GTAC	2 cut(s)	287, 432
RseI	CAYNNNNRTG	1 cut(s)	418
SapI	GCTCTTC	2 cut(s)	17, 837
SaqAI	TTAA	3 cut(s)	77, 600, 857
SatI	GCNGC	4 cut(s)	252, 318, 321, 1011
Sau3AI	GATC	4 cut(s)	39, 130, 178, 604
Sau96I	GGNCC	1 cut(s)	333
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	1 cut(s)	546
SfaNI	GCATC	4 cut(s)	238, 263, 509, 997
SfcI	CTRYAG	1 cut(s)	96
SgrAI	CRCCGGYG	1 cut(s)	895
SmiMI	CAYNNNNRTG	1 cut(s)	418
SsiI	CCGC	5 cut(s)	423, 519, 526, 1002, 1052
SspMI	CTAG	1 cut(s)	675
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	1 cut(s)	848
TaaI	ACNGT	1 cut(s)	773
TaqI	TCGA	3 cut(s)	379, 451, 990
TatI	WGTACW	2 cut(s)	286, 431
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	3 cut(s)	77, 600, 857
Tru9I	TTAA	3 cut(s)	77, 600, 857
TseFI	GTSAC	2 cut(s)	460, 509
TseI	GCWGC	4 cut(s)	251, 317, 320, 1010
Tsp45I	GTSAC	2 cut(s)	460, 509
TspDTI	ATGAA	3 cut(s)	17, 109, 737
XagI	CCTNNNNNAGG	1 cut(s)	564
XapI	RAATTY	1 cut(s)	805
XceI	RCATGY	1 cut(s)	423
XspI	CTAG	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.