Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007869

Physical Location & Seq

Genomic Coordinates Reverse (-)

33091605 .. 33105712

Gene Structure 14108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1234900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGAAGGCAATAGCAATAGCAACGCCAAAGACCAGAACCAAATCGTGGATGTCCGCTCGGTGGTCGAAGCCGTCTCCGCCGACGACTCCGACGCCCCCCTCTACCGAGTCGAAAGCCTCTGCATGCGCTGCGGCGAAAACGGTACTACCAGTTTTCTGCTGACTCTGATTCCACACTTCAGAAAGATTTTGCTTTCGGCTTTCGAGTGCCCGCATTGCAATGAGAGGAATAATGAGGTTCAGTTTGCTGGTGAGCTCCAACCCAAAGGTTGCTGCTACCAGTTGGAGGTGCCTTCTGGCGACCCCAAGATGCTTAATCGACAAGTGGTGAAGTCTGAGTCTGCTACTATTAAGATTCCCGAATTGGATTTTGAGATTCCTCCGGAGTCTCAGCGTGGATCTCTGTCAACGGTTGAGGGGATATTGTTACGAGCAGCAGATGAATTACAAGCACTTCAAGAAGAACGCAAGAAAGTGGATCCTCAGACTGCTGAAGCCTTGGACCAGTTTTTGTTAAAGTTGAGAGCCTGTGCTACAGCAGACTTGTCCTTCACCTTCATTCTTGATGATCCAGCTGGAAACAGCTTTGTTGAGAACCTGTTTGCTCCATCCCCTGATCCATCATTGAGTATAAGGTTTTATGAGCGAACTCCAGAGCAACAAAAAACATTAGGGTATGTTGTTGATGCAGCATCAACAGAAGCGGTTAGCACTTCTGACCAAGTACAAAGAGTCCCACATGGCTCAATTGGAGCAGCAGCTGGTCATCGGGCCATTGCTCAGAGTAATAGTGCTGAAATTGCTGAATCTTTGTTTCGATACACAGCTCCAGAGGAGGTGATGACTTTCCCATCAACATGCGGAGGTTGTACTGCTAGGTGTGAAACTCGAATGTTTGTCACCCACATTCCATATTTTCAAGAGGTAATTGTCATGGCATCCACCTGTGACAATTGCGGTTACCGCAATTCTGAGTTGAAGCCTGGTGGACGAGTTCCTGAGAAAGGAAAGAAAATTATTCTTCGTGTGAAGAATGTTAAGGATCTTAGTCGTGATGTAATAAAGTCAGATACTGCGAGCGTAATAATTCCAGAAATTGAGTTGGAGCTGGCTAGTGGCACTCTGGGAGGGGTTGTTACAACTATTGAAGGCTTGATAATGAAAATTAGTGAAAGTCTTGAAAGAGTGCATGGATTTAGTTTTGGAGACAGTATTGATGAGAATAAGAAAAGCAAGTGGCTAAATTTTCACACAAGCCTGAAAAAGCTTCTGTGTTTAGAAGAGCCTTGGACTTTAATTCTTGATGACGCATTGGCTAATTCTTTTATTGCACCAGCGACTGATGATATAAAAGATGACCATCAGTTGATGTTTGAGGATTATGAGAGGTCATGGGAGCAAAATGAAGAATTGGGTCTGAATGACATCGACACCTCTTCCGCTGATGCTGCTTACGATTTGAAAGATGGTGCTGTAACAGAGAAGTCGGCGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

499

Amino Acids

54.83

Weight (kDa)

4.7

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_ZPR1	PF03367	37 - 88	1.4e-20	ZPR1 zinc-finger domain
jr-ZPR1	PF22794	104 - 226	1.2e-43	ZPR1 jelly-roll domain
Zn_ribbon_ZPR1	PF03367	279 - 334	5.8e-25	ZPR1 zinc-finger domain
jr-ZPR1	PF22794	347 - 473	6.3e-36	ZPR1 jelly-roll domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22480 AT5G37340 AT5G37340 AT5G37340 AT5G37340
fragaria_vesca	FvH4_3g12070 FvH4_3g12070 FvH4_3g12070
malus_domestica	MD05G1254800.v1.1 MD10G1234900.v1.1
prunus_persica	Prupe.4G109100_v2.0.a1
pyrus_communis	pycom05g23280 pycom10g19670
rosa_chinensis	RchiOBHm_Chr5g0019781
rosa_laevigata	RLG00000032469
rosa_multiflora	Rmu_ssc0000062.1_g000029
rosa_roxburghii	Rroxscaffold_1G00058350
rosa_rugosa	Rorug05G0054000
rosa_samantha	Rh2AG311200 Rh5AG144400 Rh5BG143100 Rh5CG154900 Rh5DG143400
rosa_wichuraiana	Rw5G012770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	289
AccB7I	CCANNNNNTGG	1 cut(s)	46
AccBSI	CCGCTC	1 cut(s)	57
AccIII	TCCGGA	1 cut(s)	382
AclWI	GGATC	6 cut(s)	406, 473, 486, 563, 611, 1050
AcsI	RAATTY	1 cut(s)	1243
AcuI	CTGAAG	2 cut(s)	163, 513
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	3 cut(s)	145, 726, 871
AfiI	CCNNNNNNNGG	4 cut(s)	46, 61, 286, 1004
AgsI	TTSAA	6 cut(s)	458, 920, 979, 1148, 1181, 1462
AjnI	CCWGG	1 cut(s)	982
AluBI	AGCT	7 cut(s)	256, 575, 585, 761, 827, 1108, 1267
AluI	AGCT	7 cut(s)	256, 575, 585, 761, 827, 1108, 1267
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	3 cut(s)	79, 393, 1200
AlwI	GGATC	6 cut(s)	406, 473, 486, 563, 611, 1050
AlwNI	CAGNNNCTG	3 cut(s)	761, 1073, 1340
Aor13HI	TCCGGA	1 cut(s)	382
AoxI	GGCC	1 cut(s)	771
ApeKI	GCWGC	7 cut(s)	129, 273, 434, 689, 755, 758, 1448
ApoI	RAATTY	1 cut(s)	1243
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	2 cut(s)	502, 771
AsuHPI	GGTGA	5 cut(s)	263, 340, 544, 850, 892
AvaII	GGWCC	1 cut(s)	502
BaeGI	GKGCMC	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	7 cut(s)	116, 260, 446, 701, 767, 770, 1435
BccI	CCATC	5 cut(s)	616, 628, 859, 1368, 1460
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	984
BcoDI	GTCTC	3 cut(s)	79, 393, 1200
BfaI	CTAG	2 cut(s)	876, 1113
BfmI	CTRYAG	1 cut(s)	534
BisI	GCNGC	8 cut(s)	130, 133, 274, 435, 690, 756, 759, 1449
BlsI	GCNGC	8 cut(s)	131, 134, 275, 436, 691, 757, 760, 1450
Bme1390I	CCNGG	1 cut(s)	984
Bme18I	GGWCC	1 cut(s)	502
BmgT120I	GGNCC	2 cut(s)	502, 771
BmiI	GGNNCC	2 cut(s)	291, 480
BmrFI	CCNGG	1 cut(s)	984
BmsI	GCATC	5 cut(s)	300, 676, 701, 947, 1435
BpmI	CTGGAG	2 cut(s)	636, 813
BsaBI	GATNNNNATC	1 cut(s)	1359
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	498, 1286
BsaWI	WCCGGW	1 cut(s)	382
BsaXI	ACNNNNNCTCC	2 cut(s)	1119, 1149
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 61, 286, 1004
Bse1I	ACTGG	3 cut(s)	150, 280, 505
Bse3DI	GCAATG	3 cut(s)	214, 226, 774
Bse8I	GATNNNNATC	1 cut(s)	1359
BseAI	TCCGGA	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	984
BseDI	CCNNGG	2 cut(s)	498, 1286
BseGI	GGATG	3 cut(s)	55, 608, 938
BseJI	GATNNNNATC	1 cut(s)	1359
BseLI	CCNNNNNNNGG	4 cut(s)	46, 61, 286, 1004
BseMI	GCAATG	3 cut(s)	214, 226, 774
BseMII	CTCAG	6 cut(s)	327, 404, 497, 794, 963, 990
BseNI	ACTGG	3 cut(s)	150, 280, 505
BseRI	GAGGAG	1 cut(s)	848
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	7 cut(s)	116, 260, 446, 701, 767, 770, 1435
BshFI	GGCC	1 cut(s)	773
BshNI	GGYRCC	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	383
BslFI	GGGAC	1 cut(s)	719
BslI	CCNNNNNNNGG	4 cut(s)	46, 61, 286, 1004
BsmAI	GTCTC	3 cut(s)	79, 393, 1200
BsmBI	CGTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	719
BsnI	GGCC	1 cut(s)	773
Bsp1286I	GDGCHC	2 cut(s)	212, 258
Bsp13I	TCCGGA	1 cut(s)	382
Bsp143I	GATC	5 cut(s)	398, 478, 568, 616, 1042
BspANI	GGCC	1 cut(s)	773
BspCNI	CTCAG	6 cut(s)	328, 403, 496, 793, 964, 991
BspEI	TCCGGA	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	291, 480
BspPI	GGATC	6 cut(s)	406, 473, 486, 563, 611, 1050
BspQI	GCTCTTC	1 cut(s)	1275
BspT107I	GGYRCC	1 cut(s)	289
BsrBI	CCGCTC	1 cut(s)	57
BsrDI	GCAATG	3 cut(s)	214, 226, 774
BsrI	ACTGG	3 cut(s)	150, 280, 505
BssECI	CCNNGG	2 cut(s)	498, 1286
BssMI	GATC	5 cut(s)	398, 478, 568, 616, 1042
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	2 cut(s)	498, 1286
Bst2UI	CCWGG	1 cut(s)	984
Bst4CI	ACNGT	3 cut(s)	143, 412, 1211
Bst6I	CTCTTC	2 cut(s)	1275, 1441
BstACI	GRCGYC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstC8I	GCNNGC	4 cut(s)	125, 212, 1078, 1110
BstDEI	CTNAG	7 cut(s)	336, 390, 483, 780, 972, 999, 1046
BstEII	GGTNACC	1 cut(s)	959
BstENI	CCTNNNNNAGG	1 cut(s)	1002
BstF5I	GGATG	3 cut(s)	55, 608, 938
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	5 cut(s)	401, 481, 571, 619, 1045
BstMAI	GTCTC	3 cut(s)	79, 393, 1200
BstMBI	GATC	5 cut(s)	398, 478, 568, 616, 1042
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 129, 216, 800, 963, 1448
BstNI	CCWGG	1 cut(s)	984
BstNSI	RCATGY	2 cut(s)	127, 861
BstPI	GGTNACC	1 cut(s)	959
BstSCI	CCNGG	1 cut(s)	982
BstSFI	CTRYAG	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	212
BstV1I	GCAGC	7 cut(s)	116, 260, 446, 701, 767, 770, 1435
BstX2I	RGATCY	3 cut(s)	398, 478, 1042
BstYI	RGATCY	3 cut(s)	398, 478, 1042
BsuRI	GGCC	1 cut(s)	773
BtsCI	GGATG	3 cut(s)	55, 608, 938
Cac8I	GCNNGC	4 cut(s)	125, 212, 1078, 1110
CaiI	CAGNNNCTG	3 cut(s)	761, 1073, 1340
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	2 cut(s)	502, 771
CseI	GACGC	2 cut(s)	101, 1316
Csp6I	GTAC	3 cut(s)	144, 725, 870
CviAII	CATG	6 cut(s)	124, 740, 858, 934, 1190, 1392
CviQI	GTAC	3 cut(s)	144, 725, 870
DdeI	CTNAG	7 cut(s)	336, 390, 483, 780, 972, 999, 1046
DpnI	GATC	5 cut(s)	400, 480, 570, 618, 1044
DpnII	GATC	5 cut(s)	398, 478, 568, 616, 1042
Eam1104I	CTCTTC	2 cut(s)	1275, 1441
EarI	CTCTTC	2 cut(s)	1275, 1441
EciI	GGCGGA	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	2 cut(s)	498, 1286
Eco24I	GRGCYC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	502
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	163, 513
Eco91I	GGTNACC	1 cut(s)	959
EcoICRI	GAGCTC	1 cut(s)	256
EcoNI	CCTNNNNNAGG	1 cut(s)	1002
EcoO65I	GGTNACC	1 cut(s)	959
EcoRII	CCWGG	1 cut(s)	982
EcoT14I	CCWWGG	2 cut(s)	498, 1286
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	2 cut(s)	498, 1286
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	6 cut(s)	127, 743, 861, 937, 1193, 1395
FaqI	GGGAC	1 cut(s)	719
FatI	CATG	6 cut(s)	123, 739, 857, 933, 1189, 1391
FauI	CCCGC	1 cut(s)	219
Fnu4HI	GCNGC	8 cut(s)	130, 133, 274, 435, 690, 756, 759, 1449
FokI	GGATG	3 cut(s)	62, 595, 925
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	8 cut(s)	130, 133, 274, 435, 690, 756, 759, 1449
FspBI	CTAG	2 cut(s)	876, 1113
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	8 cut(s)	130, 133, 274, 435, 690, 756, 759, 1449
GsuI	CTGGAG	2 cut(s)	636, 813
HaeIII	GGCC	1 cut(s)	773
HapII	CCGG	1 cut(s)	383
HgaI	GACGC	2 cut(s)	101, 1316
HhaI	GCGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	6 cut(s)	127, 743, 861, 937, 1193, 1395
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HindIII	AAGCTT	1 cut(s)	1265
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	5 cut(s)	263, 340, 544, 850, 892
Hpy166II	GTNNAC	2 cut(s)	408, 989
Hpy8I	GTNNAC	2 cut(s)	408, 989
Hpy99I	CGWCG	2 cut(s)	86, 95
HpyAV	CCTTC	4 cut(s)	303, 559, 565, 1142
HpyCH4III	ACNGT	3 cut(s)	143, 412, 1211
HpyCH4V	TGCA	5 cut(s)	123, 219, 689, 1189, 1331
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 129, 216, 800, 963, 1448
HpyF3I	CTNAG	7 cut(s)	336, 390, 483, 780, 972, 999, 1046
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	6 cut(s)	127, 743, 861, 937, 1193, 1395
HspAI	GCGC	1 cut(s)	127
Kpn2I	TCCGGA	1 cut(s)	382
Kzo9I	GATC	5 cut(s)	398, 478, 568, 616, 1042
LguI	GCTCTTC	1 cut(s)	1275
LmnI	GCTCC	6 cut(s)	261, 610, 752, 832, 1105, 1396
Lsp1109I	GCAGC	7 cut(s)	116, 260, 446, 701, 767, 770, 1435
LweI	GCATC	5 cut(s)	300, 676, 701, 947, 1435
MaeI	CTAG	2 cut(s)	876, 1113
MaeIII	GTNAC	6 cut(s)	426, 898, 947, 959, 1135, 1474
MalI	GATC	5 cut(s)	400, 480, 570, 618, 1044
MbiI	CCGCTC	1 cut(s)	57
MboI	GATC	5 cut(s)	398, 478, 568, 616, 1042
MboII	GAAGA	6 cut(s)	473, 1013, 1042, 1292, 1418, 1428
MfeI	CAATTG	2 cut(s)	747, 952
MflI	RGATCY	3 cut(s)	398, 478, 1042
MhlI	GDGCHC	2 cut(s)	212, 258
MlyI	GAGTC	6 cut(s)	80, 117, 157, 347, 395, 741
MmeI	TCCRAC	4 cut(s)	114, 264, 283, 1083
MroI	TCCGGA	1 cut(s)	382
MseI	TTAA	5 cut(s)	315, 351, 515, 1038, 1295
MslI	CAYNNNNRTG	2 cut(s)	219, 856
MspA1I	CMGCKG	3 cut(s)	575, 761, 1442
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	984
MunI	CAATTG	2 cut(s)	747, 952
MvaI	CCWGG	1 cut(s)	984
MwoI	GCNNNNNNNGC	6 cut(s)	77, 129, 216, 800, 963, 1448
NdeII	GATC	5 cut(s)	398, 478, 568, 616, 1042
NlaIII	CATG	6 cut(s)	127, 743, 861, 937, 1193, 1395
NlaIV	GGNNCC	2 cut(s)	291, 480
NmuCI	GTSAC	2 cut(s)	898, 947
NspI	RCATGY	2 cut(s)	127, 861
PaeI	GCATGC	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	1275
PfeI	GAWTC	4 cut(s)	169, 355, 376, 806
PflMI	CCANNNNNTGG	1 cut(s)	46
PkrI	GCNGC	8 cut(s)	131, 134, 275, 436, 691, 757, 760, 1450
PleI	GAGTC	6 cut(s)	80, 116, 157, 346, 394, 740
PpsI	GAGTC	6 cut(s)	80, 116, 157, 346, 394, 740
Psp124BI	GAGCTC	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	982
PspEI	GGTNACC	1 cut(s)	959
PspGI	CCWGG	1 cut(s)	982
PspN4I	GGNNCC	2 cut(s)	291, 480
PspPI	GGNCC	2 cut(s)	502, 771
PstNI	CAGNNNCTG	3 cut(s)	761, 1073, 1340
PsuI	RGATCY	3 cut(s)	398, 478, 1042
PvuII	CAGCTG	2 cut(s)	575, 761
RsaI	GTAC	3 cut(s)	145, 726, 871
RsaNI	GTAC	3 cut(s)	144, 725, 870
RseI	CAYNNNNRTG	2 cut(s)	219, 856
SacI	GAGCTC	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	1275
SaqAI	TTAA	5 cut(s)	315, 351, 515, 1038, 1295
SatI	GCNGC	8 cut(s)	130, 133, 274, 435, 690, 756, 759, 1449
Sau3AI	GATC	5 cut(s)	398, 478, 568, 616, 1042
Sau96I	GGNCC	2 cut(s)	502, 771
SchI	GAGTC	6 cut(s)	80, 117, 157, 347, 395, 741
ScrFI	CCNGG	1 cut(s)	984
SduI	GDGCHC	2 cut(s)	212, 258
SfaNI	GCATC	5 cut(s)	300, 676, 701, 947, 1435
SfcI	CTRYAG	1 cut(s)	534
SinI	GGWCC	1 cut(s)	502
SmiMI	CAYNNNNRTG	2 cut(s)	219, 856
SphI	GCATGC	1 cut(s)	127
SspMI	CTAG	2 cut(s)	876, 1113
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	982
StyI	CCWWGG	2 cut(s)	498, 1286
TaaI	ACNGT	3 cut(s)	143, 412, 1211
TaqI	TCGA	7 cut(s)	66, 111, 204, 319, 817, 889, 1428
TatI	WGTACW	2 cut(s)	724, 869
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	4 cut(s)	169, 355, 376, 806
Tru1I	TTAA	5 cut(s)	315, 351, 515, 1038, 1295
Tru9I	TTAA	5 cut(s)	315, 351, 515, 1038, 1295
TseFI	GTSAC	2 cut(s)	898, 947
TseI	GCWGC	7 cut(s)	129, 273, 434, 689, 755, 758, 1448
Tsp45I	GTSAC	2 cut(s)	898, 947
TspDTI	ATGAA	4 cut(s)	456, 547, 1175, 1419
Van91I	CCANNNNNTGG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	502
XagI	CCTNNNNNAGG	1 cut(s)	1002
XapI	RAATTY	1 cut(s)	1243
XceI	RCATGY	2 cut(s)	127, 861
XspI	CTAG	2 cut(s)	876, 1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.