Rh2AG311200

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0007869
Physical Location & Seq
Forward (+)
39746223 .. 39746950
728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG311200.1

Sequence Viewer

Length: 366 bp
ATGTTGGACCAGTCGGATACTACAAGTGTGAAAATTCCGAAGCTTGAGTTGGAGCTGGGTAGTGGGACGCTTGGAGGACTTGTTACAACTATAGAAGGGTTGATCATGAAAATTTGTGAAAGTCTGGAGGGAGTGCATGGATTTTCTTTCGGAGACAGTCATGATCAAAATAAGAAAAGCAAGTGGTTAAACTTTACAGCAAGCCTAAATAAGCTTCTTAGTTTAGAAGAGCCTTTTACTTTAATTCTTGATGACGCATTGGCTAACTCTTTCATTGCACCCGTGACTGATGATATGAAAGACGACCACCAGCTAACATGTAAGTCTCTCTTGCTTTCATGTGGACCATCTAATTTTACAAGTTAA

Protein Analysis

121

Amino Acids

13.12

Weight (kDa)

4.61

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
jr-ZPR1 PF22794 4 - 103 9.5e-26 ZPR1 jelly-roll domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 33, 111
AflIII ACRYGT 1 cut(s) 317
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 4 cut(s) 43, 55, 214, 313
AluI AGCT 4 cut(s) 43, 55, 214, 313
Alw26I GTCTC 2 cut(s) 147, 330
ApoI RAATTY 2 cut(s) 33, 111
AspS9I GGNCC 2 cut(s) 7, 344
AvaII GGWCC 2 cut(s) 7, 344
BccI CCATC 1 cut(s) 355
BciVI GTATCC 1 cut(s) 10
BclI TGATCA 2 cut(s) 102, 163
BcoDI GTCTC 2 cut(s) 147, 330
BfmI CTRYAG 1 cut(s) 90
BfuI GTATCC 1 cut(s) 10
Bme18I GGWCC 2 cut(s) 7, 344
BmgT120I GGNCC 2 cut(s) 7, 344
BpmI CTGGAG 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bse1I ACTGG 1 cut(s) 10
Bse3DI GCAATG 1 cut(s) 273
BseMI GCAATG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 10
BseYI CCCAGC 1 cut(s) 55
BslFI GGGAC 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 147, 330
BsmFI GGGAC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 102, 163
BspHI TCATGA 2 cut(s) 105, 160
BspQI GCTCTTC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 1 cut(s) 10
BssMI GATC 2 cut(s) 102, 163
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 218
BstKTI GATC 2 cut(s) 105, 166
BstMAI GTCTC 2 cut(s) 147, 330
BstMBI GATC 2 cut(s) 102, 163
BstNSI RCATGY 1 cut(s) 321
BstSFI CTRYAG 1 cut(s) 90
BsuI GTATCC 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 202
CciI TCATGA 2 cut(s) 105, 160
Cfr13I GGNCC 2 cut(s) 7, 344
CseI GACGC 2 cut(s) 76, 263
CviAII CATG 5 cut(s) 106, 137, 161, 318, 339
CviJI RGCY 7 cut(s) 43, 55, 204, 214, 232, 263, 313
CviKI_1 RGCY 7 cut(s) 43, 55, 204, 214, 232, 263, 313
DdeI CTNAG 1 cut(s) 218
DpnI GATC 2 cut(s) 104, 165
DpnII GATC 2 cut(s) 102, 163
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco47I GGWCC 2 cut(s) 7, 344
FaeI CATG 5 cut(s) 109, 140, 164, 321, 342
FaiI YATR 7 cut(s) 92, 107, 138, 162, 296, 319, 340
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FaqI GGGAC 1 cut(s) 79
FatI CATG 5 cut(s) 105, 136, 160, 317, 338
FbaI TGATCA 2 cut(s) 102, 163
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 146
HgaI GACGC 2 cut(s) 76, 263
Hin1II CATG 5 cut(s) 109, 140, 164, 321, 342
HindIII AAGCTT 2 cut(s) 41, 212
Hpy166II GTNNAC 1 cut(s) 344
Hpy188I TCNGA 3 cut(s) 16, 39, 152
Hpy188III TCNNGA 4 cut(s) 106, 125, 161, 248
Hpy8I GTNNAC 1 cut(s) 344
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 2 cut(s) 136, 278
HpyF3I CTNAG 1 cut(s) 218
Hsp92II CATG 5 cut(s) 109, 140, 164, 321, 342
Ksp22I TGATCA 2 cut(s) 102, 163
Kzo9I GATC 2 cut(s) 102, 163
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 4 cut(s) 23, 41, 110, 323
MaeIII GTNAC 2 cut(s) 82, 283
MalI GATC 2 cut(s) 104, 165
MboI GATC 2 cut(s) 102, 163
MboII GAAGA 1 cut(s) 239
MluCI AATT 4 cut(s) 33, 111, 243, 352
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 2 cut(s) 68, 121
MseI TTAA 3 cut(s) 188, 242, 364
NdeII GATC 2 cut(s) 102, 163
NlaIII CATG 5 cut(s) 109, 140, 164, 321, 342
NmuCI GTSAC 1 cut(s) 283
NspI RCATGY 1 cut(s) 321
PagI TCATGA 2 cut(s) 105, 160
PciI ACATGT 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 222
PscI ACATGT 1 cut(s) 317
PspFI CCCAGC 1 cut(s) 55
PspPI GGNCC 2 cut(s) 7, 344
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 3 cut(s) 188, 242, 364
Sau3AI GATC 2 cut(s) 102, 163
Sau96I GGNCC 2 cut(s) 7, 344
SetI ASST 4 cut(s) 45, 57, 216, 315
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 2 cut(s) 7, 344
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 4 cut(s) 33, 111, 243, 352
TaaI ACNGT 1 cut(s) 158
TasI AATT 4 cut(s) 33, 111, 243, 352
Tru1I TTAA 3 cut(s) 188, 242, 364
Tru9I TTAA 3 cut(s) 188, 242, 364
TseFI GTSAC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 4 cut(s) 122, 262, 311, 327
VpaK11BI GGWCC 2 cut(s) 7, 344
XapI RAATTY 2 cut(s) 33, 111
XceI RCATGY 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.