Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007869

Physical Location & Seq

Genomic Coordinates Forward (+)

4705465 .. 4706494

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0054000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGACCCTGTACTTGAGACATATATCGGATTTGGACCTGGACGATCCCCGACGGCGGGAGCCGCCAGCAGACGAGTCGCTGCGGTATTTATGGGAGACGGGTCGTGTCGCGGTTTCATTGTTAGAATTGTTTTCCTTACATGAAAAACGATGCAACAACGCACAAGAACCAAACCCTCGTGACTGTACGCCTCGGGCGGAACAACAAAAACAAAGTCGCCGACGCCGACGCCTAATTCATGAATGTATTAATAGGGAGCTTCCTCTTTCAAAGAGACATGCAAAGGGACTTGGTTATCATCCTCGCACAATGGGTGTTGATACTAATGACTCTCATGCAAAACCTTCTACTCATTCTGCTGTCACGTCCTGTAACTGCTGTGGTATCACCCACTGGCGTCGACATTGTCCAAATCGTGATCAACGTGCTCCAGTATTGGGATCAGAAACAAAATCAAAATCTGCTGCTGGCAGCGACAGAAGTTCACGTGAGATCAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

167

Amino Acids

19.24

Weight (kDa)

9.5

Isoelectric Point (pI)

73.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22480 AT5G37340 AT5G37340 AT5G37340 AT5G37340
fragaria_vesca	FvH4_3g12070 FvH4_3g12070 FvH4_3g12070
malus_domestica	MD05G1254800.v1.1 MD10G1234900.v1.1
prunus_persica	Prupe.4G109100_v2.0.a1
pyrus_communis	pycom05g23280 pycom10g19670
rosa_chinensis	RchiOBHm_Chr5g0019781
rosa_laevigata	RLG00000032469
rosa_multiflora	Rmu_ssc0000062.1_g000029
rosa_roxburghii	Rroxscaffold_1G00058350
rosa_rugosa	Rorug05G0054000
rosa_samantha	Rh2AG311200 Rh5AG144400 Rh5BG143100 Rh5CG154900 Rh5DG143400
rosa_wichuraiana	Rw5G012770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	400
AccII	CGCG	1 cut(s)	110
AciI	CCGC	5 cut(s)	55, 62, 82, 110, 197
AclWI	GGATC	2 cut(s)	38, 448
AcvI	CACGTG	1 cut(s)	488
AcyI	GRCGYC	3 cut(s)	223, 229, 397
AfaI	GTAC	2 cut(s)	11, 187
AfiI	CCNNNNNNNGG	3 cut(s)	54, 55, 437
AgsI	TTSAA	1 cut(s)	270
AjiI	CACGTC	1 cut(s)	366
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw21I	GWGCWC	1 cut(s)	430
Alw26I	GTCTC	3 cut(s)	10, 89, 268
AlwI	GGATC	2 cut(s)	38, 448
Ama87I	CYCGRG	1 cut(s)	192
ApeKI	GCWGC	3 cut(s)	79, 464, 471
ArsI	GACNNNNNNTTYG	2 cut(s)	199, 231
AseI	ATTAAT	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	379
AvaI	CYCGRG	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	34
BauI	CACGAG	1 cut(s)	177
BbrPI	CACGTG	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	430
BbvI	GCAGC	3 cut(s)	66, 451, 483
BceAI	ACGGC	1 cut(s)	68
BcgI	CGANNNNNNTGC	2 cut(s)	57, 91
BciT130I	CCWGG	1 cut(s)	38
BclI	TGATCA	1 cut(s)	418
BcoDI	GTCTC	3 cut(s)	10, 89, 268
BisI	GCNGC	4 cut(s)	62, 80, 465, 472
BlsI	GCNGC	4 cut(s)	63, 81, 466, 473
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	192
BmgBI	CACGTC	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	34
BsaAI	YACGTR	1 cut(s)	488
BsaHI	GRCGYC	3 cut(s)	223, 229, 397
BsaJI	CCNNGG	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 55, 437
Bse1I	ACTGG	2 cut(s)	398, 431
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	3 cut(s)	54, 55, 437
BseNI	ACTGG	2 cut(s)	398, 431
BseXI	GCAGC	3 cut(s)	66, 451, 483
Bsh1236I	CGCG	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	430
BsiHKCI	CYCGRG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	3 cut(s)	54, 55, 437
BsmAI	GTCTC	3 cut(s)	10, 89, 268
BsmBI	CGTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	300
BsoBI	CYCGRG	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp143I	GATC	4 cut(s)	43, 418, 440, 492
BspACI	CCGC	5 cut(s)	55, 62, 82, 110, 197
BspFNI	CGCG	1 cut(s)	110
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	60
BspPI	GGATC	2 cut(s)	38, 448
BsrI	ACTGG	2 cut(s)	398, 431
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	4 cut(s)	43, 418, 440, 492
BssNI	GRCGYC	3 cut(s)	223, 229, 397
BssSI	CACGAG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	185
BstACI	GRCGYC	3 cut(s)	223, 229, 397
BstBAI	YACGTR	1 cut(s)	488
BstC8I	GCNNGC	2 cut(s)	66, 469
BstF5I	GGATG	1 cut(s)	298
BstFNI	CGCG	1 cut(s)	110
BstKTI	GATC	4 cut(s)	46, 421, 443, 495
BstMAI	GTCTC	3 cut(s)	10, 89, 268
BstMBI	GATC	4 cut(s)	43, 418, 440, 492
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	3 cut(s)	66, 451, 483
BtrI	CACGTC	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	66, 469
CciI	TCATGA	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	34
CseI	GACGC	3 cut(s)	231, 237, 386
Csp6I	GTAC	2 cut(s)	10, 186
CviAII	CATG	4 cut(s)	140, 239, 278, 335
CviJI	RGCY	2 cut(s)	61, 259
CviKI_1	RGCY	2 cut(s)	61, 259
CviQI	GTAC	2 cut(s)	10, 186
DpnI	GATC	4 cut(s)	45, 420, 442, 494
DpnII	GATC	4 cut(s)	43, 418, 440, 492
EciI	GGCGGA	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	34
Eco72I	CACGTG	1 cut(s)	488
Eco88I	CYCGRG	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	36
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	4 cut(s)	143, 242, 281, 338
FaiI	YATR	7 cut(s)	21, 23, 91, 141, 240, 279, 336
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	4 cut(s)	139, 238, 277, 334
FauI	CCCGC	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	418
FblI	GTMKAC	1 cut(s)	400
Fnu4HI	GCNGC	4 cut(s)	62, 80, 465, 472
FokI	GGATG	1 cut(s)	285
Fsp4HI	GCNGC	4 cut(s)	62, 80, 465, 472
GluI	GCNGC	4 cut(s)	62, 80, 465, 472
GsuI	CTGGAG	1 cut(s)	414
HgaI	GACGC	3 cut(s)	231, 237, 386
Hin1I	GRCGYC	3 cut(s)	223, 229, 397
Hin1II	CATG	4 cut(s)	143, 242, 281, 338
HincII	GTYRAC	1 cut(s)	401
HindII	GTYRAC	1 cut(s)	401
HinfI	GANTC	2 cut(s)	74, 329
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	2 cut(s)	401, 485
Hpy188I	TCNGA	2 cut(s)	28, 445
Hpy188III	TCNNGA	3 cut(s)	179, 239, 416
Hpy8I	GTNNAC	2 cut(s)	401, 485
Hpy99I	CGWCG	4 cut(s)	54, 225, 231, 402
HpyAV	CCTTC	1 cut(s)	354
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	3 cut(s)	365, 424, 487
HpyCH4V	TGCA	3 cut(s)	153, 281, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpySE526I	ACGT	3 cut(s)	365, 424, 487
Hsp92I	GRCGYC	3 cut(s)	223, 229, 397
Hsp92II	CATG	4 cut(s)	143, 242, 281, 338
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	4 cut(s)	43, 418, 440, 492
LmnI	GCTCC	3 cut(s)	58, 256, 433
LpnPI	CCDG	8 cut(s)	20, 23, 50, 78, 379, 382, 444, 453
Lsp1109I	GCAGC	3 cut(s)	66, 451, 483
LweI	GCATC	1 cut(s)	140
MaeII	ACGT	3 cut(s)	365, 424, 487
MaeIII	GTNAC	3 cut(s)	179, 361, 371
MalI	GATC	4 cut(s)	45, 420, 442, 494
MboI	GATC	4 cut(s)	43, 418, 440, 492
MhlI	GDGCHC	1 cut(s)	430
MluCI	AATT	2 cut(s)	125, 234
MlyI	GAGTC	2 cut(s)	83, 323
MnlI	CCTC	4 cut(s)	186, 201, 273, 312
MseI	TTAA	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	61
NdeII	GATC	4 cut(s)	43, 418, 440, 492
NlaIII	CATG	4 cut(s)	143, 242, 281, 338
NlaIV	GGNNCC	1 cut(s)	60
NmuCI	GTSAC	2 cut(s)	179, 361
NspI	RCATGY	1 cut(s)	281
PagI	TCATGA	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	2 cut(s)	223, 421
PflFI	GACNNNGTC	1 cut(s)	405
PkrI	GCNGC	4 cut(s)	63, 81, 466, 473
PleI	GAGTC	2 cut(s)	82, 323
PmaCI	CACGTG	1 cut(s)	488
PmlI	CACGTG	1 cut(s)	488
PpsI	GAGTC	2 cut(s)	82, 323
Ppu21I	YACGTR	1 cut(s)	488
PshBI	ATTAAT	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	36
PspCI	CACGTG	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	34
PsyI	GACNNNGTC	1 cut(s)	405
RsaI	GTAC	2 cut(s)	11, 187
RsaNI	GTAC	2 cut(s)	10, 186
SalI	GTCGAC	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	4 cut(s)	62, 80, 465, 472
Sau3AI	GATC	4 cut(s)	43, 418, 440, 492
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	2 cut(s)	83, 323
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	430
SetI	ASST	6 cut(s)	39, 261, 346, 368, 427, 490
SfaNI	GCATC	1 cut(s)	140
SinI	GGWCC	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	2 cut(s)	125, 234
SsiI	CCGC	5 cut(s)	55, 62, 82, 110, 197
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	3 cut(s)	368, 427, 490
TaqI	TCGA	1 cut(s)	400
TasI	AATT	2 cut(s)	125, 234
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	398
TseFI	GTSAC	2 cut(s)	179, 361
TseI	GCWGC	3 cut(s)	79, 464, 471
Tsp45I	GTSAC	2 cut(s)	179, 361
TspDTI	ATGAA	4 cut(s)	105, 156, 227, 255
TspRI	CASTG	1 cut(s)	398
Tth111I	GACNNNGTC	1 cut(s)	405
VpaK11BI	GGWCC	1 cut(s)	34
VspI	ATTAAT	1 cut(s)	249
XceI	RCATGY	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.