AT5G22810

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016527
Physical Location & Seq
Forward (+)
7621502 .. 7623367
1866 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G22810.1

Sequence Viewer

Length: 1080 bp
ATGGGTTTCTCGGGAATTTGGTTAAATCTTTATGTGGTGTTTGGATCTTTAATGGTTTTTGAGAGAATGGTGGTGATGAAGGCACAGCCACTGGTTCCAGCAATTTTCATATTTGGTGATTCGGTGGTTGATGTGGGAAACAACAATGATATCTACACAATCGTCAAAGCTAATTTCCCTCCTTATGGAAGAGATTTCACAACCCATACACCCACCGGACGCTTCTGCAATGGAAAGTTAGCTACTGACTTCACCGCTGAGAATCTTGGGTTCAAATCATACCCACAAGCTTATCTAAGCAAAAAGGCAAAAGGCAAGAACCTTTTGATTGGAGCTAATTTCGCCTCTGCAGCCTCTGGTTATTACGATGGCACAGCCAAGCTCTACAGTGCAATATCGTTGCCGCAACAGCTAGAACATTACAAAGACTACATTAGTCGAATCCAAGAAATCGCAACCTCAAACAACAATTCAAACGCCAGTGCCATAATCTCCAATGGCATCTATATCGTCAGCGCAGGGAGCAGCGACTTCATACAAAACTACTATATCAACCCTCTCCTCTACAGAGACCAATCACCTGATGAGTTCTCTGATCTCCTTATCCTCTCCTACTCCAGTTTTATTCAGAATTTATATTCGTTAGGAGCAAGAAGGATCGGAGTGACTACACTTCCGCCCCTCGGTTGTTTACCGGCGGCCATAACTGTAGTGGGTCCACATGAGGGTGGATGCTCGGAGAAGCTTAACAACGACGCAATCTCCTTCAACAACAAACTCAATACGACGTCACAGGATCTCAAGAGAAACCTCATTGGACTCAATTTAGTCGTCTTTGATATCTATCAGCCTCTCTATGATCTTGCCACCAGGCCATCAGAATTTGGATTTGCAGAGGCAAGAAGAGCTTGTTGTGGAACAGGGTTACTAGAGACATCAATACTGTGCAACCCAAAATCAGTAGGAACATGTAACAATGCAACTGAGTATGTCTTTTGGGACGGATTTCATCCAACGGAAGCTGCTAACAAGATTCTCGCTGACAATCTCTTGGTCTCTGGCATCTCTCTCATCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

359

Amino Acids

39.21

Weight (kDa)

5.84

Isoelectric Point (pI)

29.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 35 - 349 7.9e-37 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22810
fragaria_vesca FvH4_3g30030
malus_domestica MD11G1153800.v1.1
prunus_persica Prupe.6G116500_v2.0.a1 Prupe.6G116500_v2.0.a1
pyrus_communis pycom11g12550
rosa_chinensis RchiOBHm_Chr5g0055911
rosa_laevigata RLG00000035021
rosa_multiflora Rmu_sc0016879.1_g000001
rosa_roxburghii Rroxscaffold_1G00024440
rosa_samantha Rh5BG377000 Rh5CG400300 Rh5DG390500
rosa_wichuraiana Rw5G034390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 791
AciI CCGC 4 cut(s) 255, 404, 677, 698
AclWI GGATC 3 cut(s) 52, 665, 804
AcoI YGGCCR 1 cut(s) 699
AcsI RAATTY 3 cut(s) 15, 631, 881
AcyI GRCGYC 1 cut(s) 788
AfiI CCNNNNNNNGG 3 cut(s) 185, 683, 725
AflIII ACRYGT 1 cut(s) 968
AgsI TTSAA 3 cut(s) 274, 474, 769
AjnI CCWGG 1 cut(s) 869
AluBI AGCT 9 cut(s) 170, 242, 290, 335, 382, 412, 745, 908, 1022
AluI AGCT 9 cut(s) 170, 242, 290, 335, 382, 412, 745, 908, 1022
Alw26I GTCTC 3 cut(s) 564, 926, 1060
AlwI GGATC 3 cut(s) 52, 665, 804
AlwNI CAGNNNCTG 2 cut(s) 91, 356
Ama87I CYCGRG 1 cut(s) 10
AoxI GGCC 2 cut(s) 699, 872
ApeKI GCWGC 3 cut(s) 350, 525, 1022
ApoI RAATTY 3 cut(s) 15, 631, 881
AspLEI GCGC 1 cut(s) 518
AspS9I GGNCC 1 cut(s) 716
AsuHPI GGTGA 4 cut(s) 85, 128, 244, 570
AvaI CYCGRG 1 cut(s) 10
AvaII GGWCC 1 cut(s) 716
BbvI GCAGC 3 cut(s) 362, 537, 1009
BccI CCATC 2 cut(s) 362, 883
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BciT130I CCWGG 1 cut(s) 871
BcoDI GTCTC 3 cut(s) 564, 926, 1060
BfaI CTAG 2 cut(s) 413, 929
BfmI CTRYAG 4 cut(s) 348, 385, 565, 708
BisI GCNGC 5 cut(s) 351, 404, 526, 699, 1023
BlsI GCNGC 5 cut(s) 352, 405, 527, 700, 1024
Bme1390I CCNGG 1 cut(s) 871
Bme18I GGWCC 1 cut(s) 716
BmeT110I CYCGRG 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 716
BmiI GGNNCC 2 cut(s) 96, 717
BmrFI CCNGG 1 cut(s) 871
BmsI GCATC 3 cut(s) 510, 722, 1071
BpmI CTGGAG 1 cut(s) 601
BpuEI CTTGAG 1 cut(s) 785
BsaBI GATNNNNATC 1 cut(s) 843
BsaHI GRCGYC 1 cut(s) 788
BsaI GGTCTC 2 cut(s) 564, 1060
BsaJI CCNNGG 1 cut(s) 682
BsaWI WCCGGW 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 746, 776
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 683, 725
Bse118I RCCGGY 1 cut(s) 694
Bse1I ACTGG 3 cut(s) 96, 480, 618
Bse3DI GCAATG 1 cut(s) 235
Bse8I GATNNNNATC 1 cut(s) 843
BseBI CCWGG 1 cut(s) 871
BseDI CCNNGG 1 cut(s) 682
BseGI GGATG 2 cut(s) 737, 1009
BseJI GATNNNNATC 1 cut(s) 843
BseLI CCNNNNNNNGG 3 cut(s) 185, 683, 725
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 2 cut(s) 249, 975
BseNI ACTGG 3 cut(s) 96, 480, 618
BseRI GAGGAG 1 cut(s) 551
BseXI GCAGC 3 cut(s) 362, 537, 1009
BshFI GGCC 2 cut(s) 701, 874
BsiHKCI CYCGRG 1 cut(s) 10
BsiSI CCGG 2 cut(s) 216, 695
BslFI GGGAC 1 cut(s) 1013
BslI CCNNNNNNNGG 3 cut(s) 185, 683, 725
BsmAI GTCTC 3 cut(s) 564, 926, 1060
BsmFI GGGAC 1 cut(s) 1013
BsnI GGCC 2 cut(s) 701, 874
Bso31I GGTCTC 2 cut(s) 564, 1060
BsoBI CYCGRG 1 cut(s) 10
Bsp143I GATC 5 cut(s) 44, 595, 657, 796, 859
BspACI CCGC 4 cut(s) 255, 404, 677, 698
BspANI GGCC 2 cut(s) 701, 874
BspCNI CTCAG 2 cut(s) 250, 976
BspLI GGNNCC 2 cut(s) 96, 717
BspMAI CTGCAG 1 cut(s) 352
BspPI GGATC 3 cut(s) 52, 665, 804
BspQI GCTCTTC 1 cut(s) 898
BspTNI GGTCTC 2 cut(s) 564, 1060
BsrDI GCAATG 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 694
BsrI ACTGG 3 cut(s) 96, 480, 618
BssAI RCCGGY 1 cut(s) 694
BssECI CCNNGG 1 cut(s) 682
BssMI GATC 5 cut(s) 44, 595, 657, 796, 859
BssNI GRCGYC 1 cut(s) 788
Bst2UI CCWGG 1 cut(s) 871
Bst4CI ACNGT 3 cut(s) 389, 709, 945
Bst6I CTCTTC 2 cut(s) 184, 898
BstACI GRCGYC 1 cut(s) 788
BstDEI CTNAG 3 cut(s) 258, 296, 984
BstF5I GGATG 2 cut(s) 737, 1009
BstHHI GCGC 1 cut(s) 518
BstKTI GATC 5 cut(s) 47, 598, 660, 799, 862
BstMAI GTCTC 3 cut(s) 564, 926, 1060
BstMBI GATC 5 cut(s) 44, 595, 657, 796, 859
BstMWI GCNNNNNNNGC 5 cut(s) 341, 350, 409, 522, 905
BstNI CCWGG 1 cut(s) 871
BstNSI RCATGY 1 cut(s) 972
BstSCI CCNGG 1 cut(s) 869
BstSFI CTRYAG 4 cut(s) 348, 385, 565, 708
BstV1I GCAGC 3 cut(s) 362, 537, 1009
BstX2I RGATCY 2 cut(s) 44, 796
BstYI RGATCY 2 cut(s) 44, 796
BsuRI GGCC 2 cut(s) 701, 874
BtsCI GGATG 2 cut(s) 737, 1009
BtsIMutI CAGTG 3 cut(s) 89, 394, 487
CaiI CAGNNNCTG 2 cut(s) 91, 356
CfoI GCGC 1 cut(s) 518
Cfr10I RCCGGY 1 cut(s) 694
Cfr13I GGNCC 1 cut(s) 716
CseI GACGC 2 cut(s) 228, 764
CviAII CATG 2 cut(s) 722, 969
DdeI CTNAG 3 cut(s) 258, 296, 984
DpnI GATC 5 cut(s) 46, 597, 659, 798, 861
DpnII GATC 5 cut(s) 44, 595, 657, 796, 859
EaeI YGGCCR 1 cut(s) 699
Eam1104I CTCTTC 2 cut(s) 184, 898
EarI CTCTTC 2 cut(s) 184, 898
EciI GGCGGA 1 cut(s) 666
Eco31I GGTCTC 2 cut(s) 564, 1060
Eco32I GATATC 2 cut(s) 151, 841
Eco47I GGWCC 1 cut(s) 716
Eco88I CYCGRG 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 869
EcoRV GATATC 2 cut(s) 151, 841
FaeI CATG 2 cut(s) 725, 972
FalI AAGNNNNNCTT 2 cut(s) 892, 924
FaqI GGGAC 1 cut(s) 1013
FatI CATG 2 cut(s) 721, 968
Fnu4HI GCNGC 5 cut(s) 351, 404, 526, 699, 1023
FokI GGATG 2 cut(s) 744, 996
Fsp4HI GCNGC 5 cut(s) 351, 404, 526, 699, 1023
FspBI CTAG 2 cut(s) 413, 929
GlaI GCGC 1 cut(s) 517
GluI GCNGC 5 cut(s) 351, 404, 526, 699, 1023
GsuI CTGGAG 1 cut(s) 601
HaeIII GGCC 2 cut(s) 701, 874
HapII CCGG 2 cut(s) 216, 695
HgaI GACGC 2 cut(s) 228, 764
HhaI GCGC 1 cut(s) 518
Hin1I GRCGYC 1 cut(s) 788
Hin1II CATG 2 cut(s) 725, 972
Hin6I GCGC 1 cut(s) 516
HinP1I GCGC 1 cut(s) 516
HindIII AAGCTT 2 cut(s) 288, 743
HinfI GANTC 5 cut(s) 119, 262, 441, 819, 1033
HpaII CCGG 2 cut(s) 216, 695
HphI GGTGA 4 cut(s) 85, 128, 244, 570
Hpy166II GTNNAC 2 cut(s) 692, 719
Hpy188I TCNGA 5 cut(s) 595, 630, 662, 739, 880
Hpy188III TCNNGA 3 cut(s) 12, 802, 1077
Hpy8I GTNNAC 2 cut(s) 692, 719
Hpy99I CGWCG 2 cut(s) 758, 790
HpyAV CCTTC 3 cut(s) 73, 648, 775
HpyCH4III ACNGT 3 cut(s) 389, 709, 945
HpyCH4IV ACGT 1 cut(s) 788
HpyCH4V TGCA 6 cut(s) 228, 350, 392, 893, 948, 980
HpyF10VI GCNNNNNNNGC 5 cut(s) 341, 350, 409, 522, 905
HpyF3I CTNAG 3 cut(s) 258, 296, 984
HpySE526I ACGT 1 cut(s) 788
Hsp92I GRCGYC 1 cut(s) 788
Hsp92II CATG 2 cut(s) 725, 972
HspAI GCGC 1 cut(s) 516
Kzo9I GATC 5 cut(s) 44, 595, 657, 796, 859
LguI GCTCTTC 1 cut(s) 898
LmnI GCTCC 3 cut(s) 332, 522, 647
Lsp1109I GCAGC 3 cut(s) 362, 537, 1009
LweI GCATC 3 cut(s) 510, 722, 1071
MaeI CTAG 2 cut(s) 413, 929
MaeII ACGT 1 cut(s) 788
MaeIII GTNAC 4 cut(s) 664, 789, 924, 971
MalI GATC 5 cut(s) 46, 597, 659, 798, 861
MboI GATC 5 cut(s) 44, 595, 657, 796, 859
MboII GAAGA 2 cut(s) 201, 915
MflI RGATCY 2 cut(s) 44, 796
MluCI AATT 8 cut(s) 15, 102, 172, 337, 469, 631, 823, 881
MlyI GAGTC 1 cut(s) 813
MmeI TCCRAC 1 cut(s) 1037
MseI TTAA 3 cut(s) 23, 50, 747
MslI CAYNNNNRTG 1 cut(s) 726
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 2 cut(s) 216, 695
MspR9I CCNGG 1 cut(s) 871
MvaI CCWGG 1 cut(s) 871
MwoI GCNNNNNNNGC 5 cut(s) 341, 350, 409, 522, 905
NdeII GATC 5 cut(s) 44, 595, 657, 796, 859
NlaIII CATG 2 cut(s) 725, 972
NlaIV GGNNCC 2 cut(s) 96, 717
NmuCI GTSAC 2 cut(s) 664, 789
NspI RCATGY 1 cut(s) 972
PciI ACATGT 1 cut(s) 968
PciSI GCTCTTC 1 cut(s) 898
PfeI GAWTC 4 cut(s) 119, 262, 441, 1033
PkrI GCNGC 5 cut(s) 352, 405, 527, 700, 1024
PleI GAGTC 1 cut(s) 813
PpsI GAGTC 1 cut(s) 813
PscI ACATGT 1 cut(s) 968
Psp6I CCWGG 1 cut(s) 869
PspGI CCWGG 1 cut(s) 869
PspN4I GGNNCC 2 cut(s) 96, 717
PspPI GGNCC 1 cut(s) 716
PstI CTGCAG 1 cut(s) 352
PstNI CAGNNNCTG 2 cut(s) 91, 356
PsuI RGATCY 2 cut(s) 44, 796
RseI CAYNNNNRTG 1 cut(s) 726
SapI GCTCTTC 1 cut(s) 898
SaqAI TTAA 3 cut(s) 23, 50, 747
SatI GCNGC 5 cut(s) 351, 404, 526, 699, 1023
Sau3AI GATC 5 cut(s) 44, 595, 657, 796, 859
Sau96I GGNCC 1 cut(s) 716
SchI GAGTC 1 cut(s) 813
ScrFI CCNGG 1 cut(s) 871
SfaNI GCATC 3 cut(s) 510, 722, 1071
SfcI CTRYAG 4 cut(s) 348, 385, 565, 708
SinI GGWCC 1 cut(s) 716
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 1 cut(s) 800
SmoI CTYRAG 1 cut(s) 800
Sse9I AATT 8 cut(s) 15, 102, 172, 337, 469, 631, 823, 881
SsiI CCGC 4 cut(s) 255, 404, 677, 698
SspMI CTAG 2 cut(s) 413, 929
StyD4I CCNGG 1 cut(s) 869
TaaI ACNGT 3 cut(s) 389, 709, 945
TaiI ACGT 1 cut(s) 791
TaqI TCGA 1 cut(s) 439
TasI AATT 8 cut(s) 15, 102, 172, 337, 469, 631, 823, 881
TauI GCSGC 2 cut(s) 406, 701
TfiI GAWTC 4 cut(s) 119, 262, 441, 1033
Tru1I TTAA 3 cut(s) 23, 50, 747
Tru9I TTAA 3 cut(s) 23, 50, 747
TscAI CASTG 3 cut(s) 96, 394, 487
TseFI GTSAC 2 cut(s) 664, 789
TseI GCWGC 3 cut(s) 350, 525, 1022
Tsp45I GTSAC 2 cut(s) 664, 789
TspDTI ATGAA 4 cut(s) 92, 97, 523, 998
TspGWI ACGGA 2 cut(s) 1017, 1031
TspRI CASTG 3 cut(s) 96, 394, 487
VpaK11BI GGWCC 1 cut(s) 716
XapI RAATTY 3 cut(s) 15, 631, 881
XceI RCATGY 1 cut(s) 972
XcmI CCANNNNNNNNNTGG 1 cut(s) 709
XspI CTAG 2 cut(s) 413, 929
ZraI GACGTC 1 cut(s) 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.