FvH4_3g30030

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016527
Physical Location & Seq
Reverse (-)
23263348 .. 23265257
1910 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30030.t1

Sequence Viewer

Length: 1062 bp
ATGGGTTGTTTGTGGTCTTGGTTTCGTCCCTGCTTTCTTCTTCTAATTCCACTGCTCCATGATGTGGTTGACGGCCAGCCTTTGGTTCCTGCAATGTTCATTTTTGGAGACTCAGTTGTGGATGTTGGTAATAACAACGACCTCCTCACCTTAGTCAAATCCAATTTCCCTCCTTACGGACGAGACTTTATCAATCATAATCCAACCGGCAGGTTCTGCAATGGAAAGCTTGCTTCAGACTTCACTGCTGAAAACCTCGGCTTTACTTCTTACCAACCAGCCTATCTTAGCGGAGAAGCCACCGGAAAAAACCTCTTGATTGGTGCCAACTTTGCTTCAGCTGGTTCTGGCTATTATGAAGCTACAGCAAAGTTATTTGGTGCAATTTCACTGAGCCAGCAGGTACAGTACTACAAGGAATATCAAAATAAGGTGCGAGGAATTGGAGGCAAAGTGAATGCTACATTAATCATATCGGGTGCAATATACCTCGTTAGTGCTGGGAGCAGTGATTTTGTTCAAAACTACTACGTTAATCCTCTTCTTAACAAGGTCTATACGGCAGATCAGTTCTCTGACATTCTCATGCAATCCTATGGAAGCTTCATACAGAATCTATATGCCTTGGGAGCACGGAGAATCGGAGTGACCACCCTGCCGCCACTTGGATGTCTTCCGGCGGCCATCACACTATTCGGATTGGGCGACAACGAGTGCGTGGCTAAGCTTAACAGCGATGCAGTCTCATTTAACAACAAGCTAAACGCCACATCCCAGAATTTGCAAACTAAGCTGCCCGGACTCAAGCTGGTCGTCTTTGACATCTACCAGCCTCTCTACGACCTCGTCATGAAGCCAGAAGACAGTGGATTCGCTGAGACAAGGAGGGGTTGTTGTGGATCTGGGTTGCTGGAAACATCAATACTATGCAATGCCAAGTCCATTGGCACATGCGCCAATGCGTCTCAGTATGTGTTTTGGGACGGGTTTCATCCTTCGGAGGCCGCAAACAGGATTTTAGCAGATGATTTGCTGATTAGTGGCATCTCCCTCATCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

354

Amino Acids

38.26

Weight (kDa)

5.41

Isoelectric Point (pI)

25.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 33 - 343 1.3e-35 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22810
fragaria_vesca FvH4_3g30030
malus_domestica MD11G1153800.v1.1
prunus_persica Prupe.6G116500_v2.0.a1 Prupe.6G116500_v2.0.a1
pyrus_communis pycom11g12550
rosa_chinensis RchiOBHm_Chr5g0055911
rosa_laevigata RLG00000035021
rosa_multiflora Rmu_sc0016879.1_g000001
rosa_roxburghii Rroxscaffold_1G00024440
rosa_samantha Rh5BG377000 Rh5CG400300 Rh5DG390500
rosa_wichuraiana Rw5G034390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 201, 391
AccB1I GGYRCC 1 cut(s) 323
AccB7I CCANNNNNTGG 2 cut(s) 64, 82
AciI CCGC 4 cut(s) 291, 659, 680, 1005
AclWI GGATC 1 cut(s) 907
AcoI YGGCCR 2 cut(s) 73, 681
AcsI RAATTY 1 cut(s) 778
AcuI CTGAAG 2 cut(s) 219, 321
AfaI GTAC 2 cut(s) 405, 410
AfiI CCNNNNNNNGG 5 cut(s) 64, 82, 176, 665, 1011
AgsI TTSAA 1 cut(s) 521
AluBI AGCT 8 cut(s) 229, 341, 362, 603, 727, 760, 793, 808
AluI AGCT 8 cut(s) 229, 341, 362, 603, 727, 760, 793, 808
Alw21I GWGCWC 1 cut(s) 634
Alw26I GTCTC 5 cut(s) 102, 177, 748, 872, 969
AlwI GGATC 1 cut(s) 907
AlwNI CAGNNNCTG 1 cut(s) 216
AoxI GGCC 3 cut(s) 73, 681, 1002
ApeKI GCWGC 1 cut(s) 793
ApoI RAATTY 1 cut(s) 778
ArsI GACNNNNNNTTYG 2 cut(s) 854, 886
AseI ATTAAT 1 cut(s) 467
AspLEI GCGC 1 cut(s) 956
AsuC2I CCSGG 1 cut(s) 798
AsuHPI GGTGA 1 cut(s) 139
BanI GGYRCC 1 cut(s) 323
BbsI GAAGAC 2 cut(s) 665, 867
Bbv12I GWGCWC 1 cut(s) 634
BbvI GCAGC 1 cut(s) 780
BccI CCATC 1 cut(s) 692
BceAI ACGGC 2 cut(s) 88, 576
BcnI CCSGG 1 cut(s) 798
BcoDI GTCTC 5 cut(s) 102, 177, 748, 872, 969
BfmI CTRYAG 1 cut(s) 363
BfuAI ACCTGC 2 cut(s) 201, 391
BisI GCNGC 4 cut(s) 659, 681, 794, 1005
BlpI GCTNAGC 1 cut(s) 723
BlsI GCNGC 4 cut(s) 660, 682, 795, 1006
BmcAI AGTACT 1 cut(s) 410
Bme1390I CCNGG 1 cut(s) 798
BmiI GGNNCC 2 cut(s) 87, 325
BmrFI CCNGG 1 cut(s) 798
BmsI GCATC 2 cut(s) 727, 1053
BpiI GAAGAC 2 cut(s) 665, 867
Bpu1102I GCTNAGC 1 cut(s) 723
BpuEI CTTGAG 1 cut(s) 788
BpuMI CCSGG 1 cut(s) 798
BsaJI CCNNGG 2 cut(s) 256, 624
BsaWI WCCGGW 1 cut(s) 302
BsaXI ACNNNNNCTCC 6 cut(s) 99, 129, 438, 468, 877, 907
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 82, 176, 665, 1011
Bse118I RCCGGY 1 cut(s) 206
Bse3DI GCAATG 3 cut(s) 99, 226, 937
BseDI CCNNGG 2 cut(s) 256, 624
BseGI GGATG 4 cut(s) 127, 674, 770, 991
BseLI CCNNNNNNNGG 5 cut(s) 64, 82, 176, 665, 1011
BseMI GCAATG 3 cut(s) 99, 226, 937
BseMII CTCAG 4 cut(s) 126, 383, 867, 980
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 780
BseYI CCCAGC 1 cut(s) 500
BshFI GGCC 3 cut(s) 75, 683, 1004
BshNI GGYRCC 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 634
BsiSI CCGG 4 cut(s) 207, 303, 677, 798
BslFI GGGAC 2 cut(s) 12, 995
BslI CCNNNNNNNGG 5 cut(s) 64, 82, 176, 665, 1011
BsmAI GTCTC 5 cut(s) 102, 177, 748, 872, 969
BsmBI CGTCTC 1 cut(s) 969
BsmFI GGGAC 2 cut(s) 12, 995
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 3 cut(s) 75, 683, 1004
Bsp1286I GDGCHC 1 cut(s) 634
Bsp143I GATC 2 cut(s) 565, 899
Bsp1720I GCTNAGC 1 cut(s) 723
BspACI CCGC 4 cut(s) 291, 659, 680, 1005
BspANI GGCC 3 cut(s) 75, 683, 1004
BspCNI CTCAG 4 cut(s) 125, 384, 868, 979
BspHI TCATGA 1 cut(s) 849
BspLI GGNNCC 2 cut(s) 87, 325
BspMI ACCTGC 2 cut(s) 201, 391
BspPI GGATC 1 cut(s) 907
BspT107I GGYRCC 1 cut(s) 323
BsrDI GCAATG 3 cut(s) 99, 226, 937
BsrFI RCCGGY 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 256, 624
BssMI GATC 2 cut(s) 565, 899
BssT1I CCWWGG 1 cut(s) 624
Bst4CI ACNGT 2 cut(s) 408, 866
Bst6I CTCTTC 1 cut(s) 546
BstAPI GCANNNNNTGC 1 cut(s) 216
BstC8I GCNNGC 3 cut(s) 77, 231, 398
BstDEI CTNAG 8 cut(s) 112, 151, 287, 392, 723, 789, 876, 966
BstF5I GGATG 4 cut(s) 127, 674, 770, 991
BstHHI GCGC 1 cut(s) 956
BstKTI GATC 2 cut(s) 568, 902
BstMAI GTCTC 5 cut(s) 102, 177, 748, 872, 969
BstMBI GATC 2 cut(s) 565, 899
BstMWI GCNNNNNNNGC 4 cut(s) 216, 332, 629, 790
BstNSI RCATGY 1 cut(s) 954
BstSCI CCNGG 1 cut(s) 796
BstSFI CTRYAG 1 cut(s) 363
BstV1I GCAGC 1 cut(s) 780
BstV2I GAAGAC 2 cut(s) 665, 867
BstX2I RGATCY 1 cut(s) 899
BstYI RGATCY 1 cut(s) 899
BsuRI GGCC 3 cut(s) 75, 683, 1004
BtgZI GCGATG 1 cut(s) 750
BtsCI GGATG 4 cut(s) 127, 674, 770, 991
BtsI GCAGTG 3 cut(s) 50, 243, 514
BtsIMutI CAGTG 5 cut(s) 50, 243, 389, 514, 871
BveI ACCTGC 2 cut(s) 201, 391
Cac8I GCNNGC 3 cut(s) 77, 231, 398
CaiI CAGNNNCTG 1 cut(s) 216
CciI TCATGA 1 cut(s) 849
CfoI GCGC 1 cut(s) 956
Cfr10I RCCGGY 1 cut(s) 206
CseI GACGC 1 cut(s) 951
Csp6I GTAC 2 cut(s) 404, 409
CviAII CATG 4 cut(s) 59, 586, 850, 951
CviQI GTAC 2 cut(s) 404, 409
DdeI CTNAG 8 cut(s) 112, 151, 287, 392, 723, 789, 876, 966
DpnI GATC 2 cut(s) 567, 901
DpnII GATC 2 cut(s) 565, 899
EaeI YGGCCR 2 cut(s) 73, 681
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
Eco130I CCWWGG 1 cut(s) 624
Eco57I CTGAAG 2 cut(s) 219, 321
EcoT14I CCWWGG 1 cut(s) 624
ErhI CCWWGG 1 cut(s) 624
Esp3I CGTCTC 1 cut(s) 969
FaeI CATG 4 cut(s) 62, 589, 853, 954
FaqI GGGAC 2 cut(s) 12, 995
FatI CATG 4 cut(s) 58, 585, 849, 950
Fnu4HI GCNGC 4 cut(s) 659, 681, 794, 1005
FokI GGATG 4 cut(s) 134, 681, 757, 978
Fsp4HI GCNGC 4 cut(s) 659, 681, 794, 1005
GlaI GCGC 1 cut(s) 955
GluI GCNGC 4 cut(s) 659, 681, 794, 1005
GsaI CCCAGC 1 cut(s) 504
HaeIII GGCC 3 cut(s) 75, 683, 1004
HapII CCGG 4 cut(s) 207, 303, 677, 798
HgaI GACGC 1 cut(s) 951
HhaI GCGC 1 cut(s) 956
Hin1II CATG 4 cut(s) 62, 589, 853, 954
Hin6I GCGC 1 cut(s) 954
HinP1I GCGC 1 cut(s) 954
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HindIII AAGCTT 3 cut(s) 227, 601, 725
HinfI GANTC 5 cut(s) 110, 613, 639, 801, 870
HpaII CCGG 4 cut(s) 207, 303, 677, 798
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 5 cut(s) 238, 577, 644, 698, 1000
Hpy188III TCNNGA 2 cut(s) 316, 850
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 1005
HpyCH4III ACNGT 2 cut(s) 408, 866
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 8 cut(s) 92, 219, 383, 482, 589, 740, 784, 930
HpyF10VI GCNNNNNNNGC 4 cut(s) 216, 332, 629, 790
HpyF3I CTNAG 8 cut(s) 112, 151, 287, 392, 723, 789, 876, 966
HpySE526I ACGT 1 cut(s) 531
Hsp92II CATG 4 cut(s) 62, 589, 853, 954
HspAI GCGC 1 cut(s) 954
Kzo9I GATC 2 cut(s) 565, 899
LmnI GCTCC 3 cut(s) 60, 504, 629
Lsp1109I GCAGC 1 cut(s) 780
LweI GCATC 2 cut(s) 727, 1053
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 1 cut(s) 646
MalI GATC 2 cut(s) 567, 901
MboI GATC 2 cut(s) 565, 899
MboII GAAGA 6 cut(s) 29, 32, 533, 665, 872, 1048
MflI RGATCY 1 cut(s) 899
MhlI GDGCHC 1 cut(s) 634
MluCI AATT 5 cut(s) 45, 163, 384, 441, 778
MlyI GAGTC 2 cut(s) 104, 795
MmeI TCCRAC 1 cut(s) 227
MseI TTAA 5 cut(s) 467, 534, 546, 729, 750
MslI CAYNNNNRTG 2 cut(s) 584, 667
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 4 cut(s) 207, 303, 677, 798
MspR9I CCNGG 1 cut(s) 798
Mva1269I GAATGC 1 cut(s) 463
MwoI GCNNNNNNNGC 4 cut(s) 216, 332, 629, 790
NciI CCSGG 1 cut(s) 798
NdeII GATC 2 cut(s) 565, 899
NlaIII CATG 4 cut(s) 62, 589, 853, 954
NlaIV GGNNCC 2 cut(s) 87, 325
NmeAIII GCCGAG 1 cut(s) 237
NmuCI GTSAC 1 cut(s) 646
NspI RCATGY 1 cut(s) 954
PagI TCATGA 1 cut(s) 849
PcsI WCGNNNNNNNCGW 1 cut(s) 702
PctI GAATGC 1 cut(s) 463
PfeI GAWTC 3 cut(s) 613, 639, 870
PflFI GACNNNGTC 1 cut(s) 845
PflMI CCANNNNNTGG 2 cut(s) 64, 82
PkrI GCNGC 4 cut(s) 660, 682, 795, 1006
PleI GAGTC 2 cut(s) 104, 795
PpsI GAGTC 2 cut(s) 104, 795
PshBI ATTAAT 1 cut(s) 467
PspFI CCCAGC 1 cut(s) 500
PspN4I GGNNCC 2 cut(s) 87, 325
PstNI CAGNNNCTG 1 cut(s) 216
PsuI RGATCY 1 cut(s) 899
PsyI GACNNNGTC 1 cut(s) 845
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 2 cut(s) 405, 410
RsaNI GTAC 2 cut(s) 404, 409
RseI CAYNNNNRTG 2 cut(s) 584, 667
SaqAI TTAA 5 cut(s) 467, 534, 546, 729, 750
SatI GCNGC 4 cut(s) 659, 681, 794, 1005
Sau3AI GATC 2 cut(s) 565, 899
ScaI AGTACT 1 cut(s) 410
SchI GAGTC 2 cut(s) 104, 795
ScrFI CCNGG 1 cut(s) 798
SduI GDGCHC 1 cut(s) 634
SfaNI GCATC 2 cut(s) 727, 1053
SfcI CTRYAG 1 cut(s) 363
SmiMI CAYNNNNRTG 2 cut(s) 584, 667
SmlI CTYRAG 1 cut(s) 803
SmoI CTYRAG 1 cut(s) 803
Sse9I AATT 5 cut(s) 45, 163, 384, 441, 778
SsiI CCGC 4 cut(s) 291, 659, 680, 1005
StyD4I CCNGG 1 cut(s) 796
StyI CCWWGG 1 cut(s) 624
TaaI ACNGT 2 cut(s) 408, 866
TaiI ACGT 1 cut(s) 534
TasI AATT 5 cut(s) 45, 163, 384, 441, 778
TatI WGTACW 1 cut(s) 408
TauI GCSGC 3 cut(s) 661, 683, 1007
TfiI GAWTC 3 cut(s) 613, 639, 870
Tru1I TTAA 5 cut(s) 467, 534, 546, 729, 750
Tru9I TTAA 5 cut(s) 467, 534, 546, 729, 750
TscAI CASTG 5 cut(s) 57, 250, 396, 514, 871
TseFI GTSAC 1 cut(s) 646
TseI GCWGC 1 cut(s) 793
Tsp45I GTSAC 1 cut(s) 646
TspDTI ATGAA 5 cut(s) 88, 372, 595, 866, 980
TspGWI ACGGA 2 cut(s) 192, 649
TspRI CASTG 5 cut(s) 57, 250, 396, 514, 871
Tth111I GACNNNGTC 1 cut(s) 845
Van91I CCANNNNNTGG 2 cut(s) 64, 82
VspI ATTAAT 1 cut(s) 467
XapI RAATTY 1 cut(s) 778
XceI RCATGY 1 cut(s) 954
ZrmI AGTACT 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.