Prupe.6G116500_v2.0.a1

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016527
Physical Location & Seq
Reverse (-)
8477139 .. 8479411
2273 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G116500.1

Sequence Viewer

Length: 1056 bp
ATGGGCTCTTTGTGCTCTTTCTTAGCTTCCTTTTCTCTTTTGATTATGGTACTCTCTCTGGCTCATGGGCAGCCTTTGGTTCCTGCCTTGTTCCTATTTGGAGACTCTGTTGTGGATGCTGGTAATAACAACAATGTCAAAACCATAATCAAAGCCAACTTCCCTCCTTATGGAAGAGACTTTTCCAACCACAAGCCAACTGGTAGGTTCTGCAATGGAAAGCTTGCTTCAGACTTCACTGCTGAAAACCTTGGCTTTACTTCCTACCCACCAGCGTATCTTAGCAAAGAAGCTGCAGGAAAAAACCTCTTGATTGGTGCCAATTTTGCCTCAGCTGGTTCTGGTTATTATGACTCTACAGCAAAATTATATCATACTATTTCACTAAATCAGCAGCTGGAGAACTACAAGGAATACCAAAACAAGGTGGTGGGAATTGCAGGAAAGGCCAATCTTACATCAATCATATCTGGTGCTGTCTACCTTGTTAGTGCTGGCAGCAGTGACTTTGTTCAGAACTACTACATTAATCCTCTTCTTTACAAGGTCTACACAGCTAACCAGTTCTCTGACATTCTCATTCAATCTTATGCAAAATTTATTCAGAATCTATATGTATTGGGAGCAAGGAAAATTGGAGTGACCACATTGCCACCACTAGGATGCTTGCCAGCAGCCATCACAATATTTGGGGCGGATAGCAATGAGTGCTTGGCTAAATTTAACAAGGATGCTGTCTCATTTAATAACAAGCTCAATGCCACATCTCAGAGCTTGCAAAAGCAACTTTCTGGTCTCACTTTGGTCATCTTTGACATCTACCAACCTCTCTACAACCTTGTCACAAAGCCCGCCGAAAATGGGTTCTTTGAGGCAAGGAAGGCGTGTTGTGGAACAGGCCTGGTAGAAACATCAATACTGTGCAATGCCGAGTCAATTGGCACGTGCGCCAATGCATCAGAGTATGTGTTTTGGGATAGTGTTCATCCTTCGGAAGCTGCAAACAAAGTTTTAGCCGATGATTTGCTGAGCAGTGGCATCTCCCTCATATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

352

Amino Acids

37.78

Weight (kDa)

6.87

Isoelectric Point (pI)

26.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22810
fragaria_vesca FvH4_3g30030
malus_domestica MD11G1153800.v1.1
prunus_persica Prupe.6G116500_v2.0.a1 Prupe.6G116500_v2.0.a1
pyrus_communis pycom11g12550
rosa_chinensis RchiOBHm_Chr5g0055911
rosa_laevigata RLG00000035021
rosa_multiflora Rmu_sc0016879.1_g000001
rosa_roxburghii Rroxscaffold_1G00024440
rosa_samantha Rh5BG377000 Rh5CG400300 Rh5DG390500
rosa_wichuraiana Rw5G034390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 317
AccI GTMKAC 2 cut(s) 480, 549
AciI CCGC 2 cut(s) 695, 852
AcsI RAATTY 2 cut(s) 596, 719
AcuI CTGAAG 1 cut(s) 213
AcvI CACGTG 1 cut(s) 945
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 4 cut(s) 170, 424, 659, 861
AgsI TTSAA 1 cut(s) 584
AjnI CCWGG 1 cut(s) 900
AluBI AGCT 9 cut(s) 26, 223, 293, 335, 397, 557, 754, 774, 998
AluI AGCT 9 cut(s) 26, 223, 293, 335, 397, 557, 754, 774, 998
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 4 cut(s) 96, 171, 742, 800
AlwNI CAGNNNCTG 1 cut(s) 397
AoxI GGCC 2 cut(s) 447, 898
ApeKI GCWGC 6 cut(s) 70, 293, 394, 498, 674, 998
ApoI RAATTY 2 cut(s) 596, 719
AseI ATTAAT 1 cut(s) 528
AspLEI GCGC 1 cut(s) 950
BaeI ACNNNNGTAYC 2 cut(s) 260, 293
BanI GGYRCC 1 cut(s) 317
BanII GRGCYC 1 cut(s) 8
BbrPI CACGTG 1 cut(s) 945
Bbv12I GWGCWC 1 cut(s) 17
BbvCI CCTCAGC 1 cut(s) 331
BbvI GCAGC 6 cut(s) 82, 280, 406, 510, 686, 985
BccI CCATC 1 cut(s) 686
BciT130I CCWGG 1 cut(s) 902
BcoDI GTCTC 4 cut(s) 96, 171, 742, 800
BfaI CTAG 1 cut(s) 659
BfmI CTRYAG 2 cut(s) 294, 357
BisI GCNGC 6 cut(s) 71, 294, 395, 499, 675, 999
BlpI GCTNAGC 1 cut(s) 1028
BlsI GCNGC 6 cut(s) 72, 295, 396, 500, 676, 1000
Bme1390I CCNGG 1 cut(s) 902
BmiI GGNNCC 2 cut(s) 81, 319
BmrFI CCNGG 1 cut(s) 902
BmsI GCATC 5 cut(s) 106, 653, 721, 965, 1047
BpmI CTGGAG 1 cut(s) 419
Bpu10I CCTNAGC 1 cut(s) 331
Bpu1102I GCTNAGC 1 cut(s) 1028
BsaAI YACGTR 1 cut(s) 945
BsaI GGTCTC 1 cut(s) 800
BsaJI CCNNGG 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 4 cut(s) 170, 424, 659, 861
Bse1I ACTGG 2 cut(s) 205, 562
Bse3DI GCAATG 4 cut(s) 220, 647, 709, 931
BseBI CCWGG 1 cut(s) 902
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 4 cut(s) 121, 668, 736, 985
BseLI CCNNNNNNNGG 4 cut(s) 170, 424, 659, 861
BseMI GCAATG 4 cut(s) 220, 647, 709, 931
BseMII CTCAG 3 cut(s) 345, 782, 1019
BseNI ACTGG 2 cut(s) 205, 562
BseXI GCAGC 6 cut(s) 82, 280, 406, 510, 686, 985
BshFI GGCC 2 cut(s) 449, 900
BshNI GGYRCC 1 cut(s) 317
BsiHKAI GWGCWC 1 cut(s) 17
BslI CCNNNNNNNGG 4 cut(s) 170, 424, 659, 861
BsmAI GTCTC 4 cut(s) 96, 171, 742, 800
BsnI GGCC 2 cut(s) 449, 900
Bso31I GGTCTC 1 cut(s) 800
Bsp1286I GDGCHC 2 cut(s) 8, 17
Bsp1720I GCTNAGC 1 cut(s) 1028
BspACI CCGC 2 cut(s) 695, 852
BspANI GGCC 2 cut(s) 449, 900
BspCNI CTCAG 3 cut(s) 344, 781, 1020
BspLI GGNNCC 2 cut(s) 81, 319
BspMAI CTGCAG 1 cut(s) 298
BspT107I GGYRCC 1 cut(s) 317
BspTNI GGTCTC 1 cut(s) 800
BsrDI GCAATG 4 cut(s) 220, 647, 709, 931
BsrI ACTGG 2 cut(s) 205, 562
BssECI CCNNGG 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 902
Bst4CI ACNGT 1 cut(s) 921
Bst6I CTCTTC 2 cut(s) 169, 540
BstAPI GCANNNNNTGC 1 cut(s) 708
BstBAI YACGTR 1 cut(s) 945
BstC8I GCNNGC 6 cut(s) 225, 496, 668, 672, 776, 852
BstDEI CTNAG 5 cut(s) 22, 281, 331, 768, 1028
BstF5I GGATG 4 cut(s) 121, 668, 736, 985
BstHHI GCGC 1 cut(s) 950
BstMAI GTCTC 4 cut(s) 96, 171, 742, 800
BstMWI GCNNNNNNNGC 5 cut(s) 12, 326, 446, 708, 881
BstNI CCWGG 1 cut(s) 902
BstSCI CCNGG 1 cut(s) 900
BstSFI CTRYAG 2 cut(s) 294, 357
BstV1I GCAGC 6 cut(s) 82, 280, 406, 510, 686, 985
BsuRI GGCC 2 cut(s) 449, 900
BtsCI GGATG 4 cut(s) 121, 668, 736, 985
BtsI GCAGTG 3 cut(s) 237, 508, 1039
BtsIMutI CAGTG 3 cut(s) 237, 508, 1039
Cac8I GCNNGC 6 cut(s) 225, 496, 668, 672, 776, 852
CaiI CAGNNNCTG 1 cut(s) 397
CfoI GCGC 1 cut(s) 950
Csp6I GTAC 1 cut(s) 50
CviAII CATG 1 cut(s) 65
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 5 cut(s) 22, 281, 331, 768, 1028
Eam1104I CTCTTC 2 cut(s) 169, 540
EarI CTCTTC 2 cut(s) 169, 540
EciI GGCGGA 1 cut(s) 710
Eco130I CCWWGG 1 cut(s) 250
Eco147I AGGCCT 1 cut(s) 900
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 800
Eco57I CTGAAG 1 cut(s) 213
Eco72I CACGTG 1 cut(s) 945
EcoRII CCWGG 1 cut(s) 900
EcoT14I CCWWGG 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 958
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 1 cut(s) 68
FatI CATG 1 cut(s) 64
FauI CCCGC 1 cut(s) 859
FblI GTMKAC 2 cut(s) 480, 549
Fnu4HI GCNGC 6 cut(s) 71, 294, 395, 499, 675, 999
FokI GGATG 4 cut(s) 128, 675, 743, 972
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 6 cut(s) 71, 294, 395, 499, 675, 999
FspBI CTAG 1 cut(s) 659
GlaI GCGC 1 cut(s) 949
GluI GCNGC 6 cut(s) 71, 294, 395, 499, 675, 999
GsuI CTGGAG 1 cut(s) 419
HaeIII GGCC 2 cut(s) 449, 900
HhaI GCGC 1 cut(s) 950
Hin1II CATG 1 cut(s) 68
Hin6I GCGC 1 cut(s) 948
HinP1I GCGC 1 cut(s) 948
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 4 cut(s) 104, 353, 607, 932
Hpy166II GTNNAC 2 cut(s) 481, 550
Hpy188I TCNGA 7 cut(s) 232, 516, 571, 606, 771, 961, 994
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 2 cut(s) 481, 550
HpyAV CCTTC 2 cut(s) 874, 999
HpyCH4III ACNGT 1 cut(s) 921
HpyCH4IV ACGT 1 cut(s) 944
HpyCH4V TGCA 8 cut(s) 213, 296, 440, 593, 778, 924, 956, 1001
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 326, 446, 708, 881
HpyF3I CTNAG 5 cut(s) 22, 281, 331, 768, 1028
HpySE526I ACGT 1 cut(s) 944
Hsp92II CATG 1 cut(s) 68
HspAI GCGC 1 cut(s) 948
LmnI GCTCC 1 cut(s) 623
Lsp1109I GCAGC 6 cut(s) 82, 280, 406, 510, 686, 985
LweI GCATC 5 cut(s) 106, 653, 721, 965, 1047
MaeI CTAG 1 cut(s) 659
MaeII ACGT 1 cut(s) 944
MaeIII GTNAC 3 cut(s) 503, 640, 841
MboII GAAGA 2 cut(s) 186, 527
MfeI CAATTG 1 cut(s) 936
MhlI GDGCHC 2 cut(s) 8, 17
MluCI AATT 7 cut(s) 322, 365, 435, 596, 633, 719, 936
MlyI GAGTC 3 cut(s) 98, 347, 941
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 7 cut(s) 174, 317, 340, 543, 837, 865, 1055
Mph1103I ATGCAT 1 cut(s) 958
MseI TTAA 3 cut(s) 528, 723, 744
MslI CAYNNNNRTG 1 cut(s) 661
MspA1I CMGCKG 2 cut(s) 335, 397
MspR9I CCNGG 1 cut(s) 902
MunI CAATTG 1 cut(s) 936
MvaI CCWGG 1 cut(s) 902
MwoI GCNNNNNNNGC 5 cut(s) 12, 326, 446, 708, 881
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 2 cut(s) 81, 319
NmeAIII GCCGAG 1 cut(s) 955
NmuCI GTSAC 3 cut(s) 503, 640, 841
NsiI ATGCAT 1 cut(s) 958
PceI AGGCCT 1 cut(s) 900
PfeI GAWTC 1 cut(s) 607
PkrI GCNGC 6 cut(s) 72, 295, 396, 500, 676, 1000
PleI GAGTC 3 cut(s) 98, 347, 940
PmaCI CACGTG 1 cut(s) 945
PmlI CACGTG 1 cut(s) 945
PpsI GAGTC 3 cut(s) 98, 347, 940
Ppu21I YACGTR 1 cut(s) 945
PshBI ATTAAT 1 cut(s) 528
Psp6I CCWGG 1 cut(s) 900
PspCI CACGTG 1 cut(s) 945
PspGI CCWGG 1 cut(s) 900
PspN4I GGNNCC 2 cut(s) 81, 319
PstI CTGCAG 1 cut(s) 298
PstNI CAGNNNCTG 1 cut(s) 397
PvuII CAGCTG 2 cut(s) 335, 397
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 661
SaqAI TTAA 3 cut(s) 528, 723, 744
SatI GCNGC 6 cut(s) 71, 294, 395, 499, 675, 999
SchI GAGTC 3 cut(s) 98, 347, 941
ScrFI CCNGG 1 cut(s) 902
SduI GDGCHC 2 cut(s) 8, 17
SfaNI GCATC 5 cut(s) 106, 653, 721, 965, 1047
SfcI CTRYAG 2 cut(s) 294, 357
SmiMI CAYNNNNRTG 1 cut(s) 661
Sse9I AATT 7 cut(s) 322, 365, 435, 596, 633, 719, 936
SseBI AGGCCT 1 cut(s) 900
SsiI CCGC 2 cut(s) 695, 852
SspI AATATT 1 cut(s) 687
SspMI CTAG 1 cut(s) 659
StuI AGGCCT 1 cut(s) 900
StyD4I CCNGG 1 cut(s) 900
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 921
TaiI ACGT 1 cut(s) 947
TasI AATT 7 cut(s) 322, 365, 435, 596, 633, 719, 936
TfiI GAWTC 1 cut(s) 607
Tru1I TTAA 3 cut(s) 528, 723, 744
Tru9I TTAA 3 cut(s) 528, 723, 744
TscAI CASTG 3 cut(s) 244, 508, 1039
TseFI GTSAC 3 cut(s) 503, 640, 841
TseI GCWGC 6 cut(s) 70, 293, 394, 498, 674, 998
Tsp45I GTSAC 3 cut(s) 503, 640, 841
TspDTI ATGAA 1 cut(s) 974
TspRI CASTG 3 cut(s) 244, 508, 1039
VspI ATTAAT 1 cut(s) 528
XapI RAATTY 2 cut(s) 596, 719
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XmiI GTMKAC 2 cut(s) 480, 549
XspI CTAG 1 cut(s) 659
Zsp2I ATGCAT 1 cut(s) 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.