RLG00000035021

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016527
Physical Location & Seq
Forward (+)
59315808 .. 59317280
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035021

Sequence Viewer

Length: 969 bp
ATGTTCATATTTGGAGACTCAGTTGTGGATGTGGGTAATAACAACAACCTCTTCTCCTTAATCAAATCCAACTTCCCTCCTTATGGAAGAGACTTTGTCAATCACAATCCCACAGGCAGGTTCTGCAATGGAAAGCTTGCTTCAGACTTCACTGCTGAAAACCTTGGCTTTGCTTCTCACCAACCAGCTTATCTCAGCGGAGAAGCCACAGGGAAAAGCCTCTTGATTGGTGCCAACTTTGCTTCAGCTGGCTCTGGCTATTATGACGCTACAGCAAAGTTATTTAATGCAATTTCGCTGAGCCAGCAGGTGGAGTACTACAAGGAATATCAAAATAAGGTGGTGGGAATTGGAGGAAAAGTGAATGCTACGTTAATCATATCGGGTGCAGTATACCTTGTTAGTGCTGGGAGCAGTGATTTCGTTCAGAACTACTACATCAATCCTCTTCTTAACAAGGTCTATACGACAGACCAGTTCTCTAACATTCTCATGCAGTCCTATGAAAACTTCATACAGAATCTATATGCCTTGGGAGCACGCAGAATCGGAGTGACCACCCTGCCACCACTTGGATGTCTGCCGGCGGCCATCACAATATTTGGATTAGGCGGCAACAAGTGCGTGGCTAAGCTTAATGGCGATGCAGTCTCATTTAACAATAAGCTAAATGCCACATCTCAGTACTTGCAAACTAAGCTGCCCGGACTCAAGTTGGTCGTCTTTGACATCTACCAGCCTCTCTACAACCTTGTCACAAAGCCTTCAGAGAATGGGTTCTCAGAGGCTAGAAGGGCTTGTTGTGGATCAGGGTTGCTGGAAACATCAATACTATGCAATGCCAAGTCCACCGGCACATGCGCCAATGCGACAGAGTACGTGTTCTGGGATGGGTTTCATCCTTCGGAGGCCGCAAACAAAATTTTAGCTGATGATTTGCTGAGTAGTGGCATCTCTCTCATCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

323

Amino Acids

34.67

Weight (kDa)

6.81

Isoelectric Point (pI)

26.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 2 - 312 7e-37 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22810
fragaria_vesca FvH4_3g30030
malus_domestica MD11G1153800.v1.1
prunus_persica Prupe.6G116500_v2.0.a1 Prupe.6G116500_v2.0.a1
pyrus_communis pycom11g12550
rosa_chinensis RchiOBHm_Chr5g0055911
rosa_laevigata RLG00000035021
rosa_multiflora Rmu_sc0016879.1_g000001
rosa_roxburghii Rroxscaffold_1G00024440
rosa_samantha Rh5BG377000 Rh5CG400300 Rh5DG390500
rosa_wichuraiana Rw5G034390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 298
Acc36I ACCTGC 2 cut(s) 108, 298
AccB1I GGYRCC 1 cut(s) 230
AccB7I CCANNNNNTGG 2 cut(s) 310, 572
AccI GTMKAC 1 cut(s) 393
AciI CCGC 4 cut(s) 198, 587, 612, 912
AclWI GGATC 1 cut(s) 814
AcoI YGGCCR 1 cut(s) 588
AcsI RAATTY 1 cut(s) 921
AcuI CTGAAG 3 cut(s) 126, 228, 750
AfaI GTAC 3 cut(s) 317, 686, 878
AfiI CCNNNNNNNGG 4 cut(s) 83, 117, 310, 572
AflIII ACRYGT 1 cut(s) 879
AluBI AGCT 7 cut(s) 136, 188, 248, 634, 667, 700, 929
AluI AGCT 7 cut(s) 136, 188, 248, 634, 667, 700, 929
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 3 cut(s) 9, 84, 655
AlwI GGATC 1 cut(s) 814
AlwNI CAGNNNCTG 1 cut(s) 123
AoxI GGCC 2 cut(s) 588, 909
ApeKI GCWGC 1 cut(s) 700
ApoI RAATTY 1 cut(s) 921
Asp700I GAANNNNTTC 1 cut(s) 776
AspLEI GCGC 1 cut(s) 863
AsuC2I CCSGG 1 cut(s) 705
AsuHPI GGTGA 1 cut(s) 170
BanI GGYRCC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 1 cut(s) 687
BccI CCATC 2 cut(s) 599, 884
BcgI CGANNNNNNTGC 2 cut(s) 403, 437
BcnI CCSGG 1 cut(s) 705
BcoDI GTCTC 3 cut(s) 9, 84, 655
BfaI CTAG 1 cut(s) 789
BfmI CTRYAG 1 cut(s) 270
BfuAI ACCTGC 2 cut(s) 108, 298
BisI GCNGC 4 cut(s) 588, 613, 701, 912
BlpI GCTNAGC 2 cut(s) 299, 630
BlsI GCNGC 4 cut(s) 589, 614, 702, 913
BmcAI AGTACT 2 cut(s) 317, 686
Bme1390I CCNGG 1 cut(s) 705
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 705
BmsI GCATC 2 cut(s) 634, 960
Bpu1102I GCTNAGC 2 cut(s) 299, 630
BpuEI CTTGAG 1 cut(s) 695
BpuMI CCSGG 1 cut(s) 705
BsaAI YACGTR 1 cut(s) 880
BsaJI CCNNGG 2 cut(s) 163, 531
BsaXI ACNNNNNCTCC 6 cut(s) 6, 36, 38, 68, 345, 375
Bsc4I CCNNNNNNNGG 4 cut(s) 83, 117, 310, 572
Bse118I RCCGGY 2 cut(s) 583, 851
Bse1I ACTGG 1 cut(s) 475
Bse3DI GCAATG 2 cut(s) 133, 844
BseDI CCNNGG 2 cut(s) 163, 531
BseGI GGATG 4 cut(s) 34, 581, 895, 898
BseLI CCNNNNNNNGG 4 cut(s) 83, 117, 310, 572
BseMI GCAATG 2 cut(s) 133, 844
BseMII CTCAG 6 cut(s) 33, 208, 290, 695, 795, 932
BseNI ACTGG 1 cut(s) 475
BseXI GCAGC 1 cut(s) 687
BseYI CCCAGC 1 cut(s) 407
BsgI GTGCAG 1 cut(s) 408
BshFI GGCC 2 cut(s) 590, 911
BshNI GGYRCC 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 541
BsiSI CCGG 3 cut(s) 584, 705, 852
BslI CCNNNNNNNGG 4 cut(s) 83, 117, 310, 572
BsmAI GTCTC 3 cut(s) 9, 84, 655
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 2 cut(s) 590, 911
Bsp1286I GDGCHC 1 cut(s) 541
Bsp143I GATC 1 cut(s) 806
Bsp1720I GCTNAGC 2 cut(s) 299, 630
BspACI CCGC 4 cut(s) 198, 587, 612, 912
BspANI GGCC 2 cut(s) 590, 911
BspCNI CTCAG 6 cut(s) 32, 207, 291, 694, 794, 933
BspLI GGNNCC 1 cut(s) 232
BspMI ACCTGC 2 cut(s) 108, 298
BspPI GGATC 1 cut(s) 814
BspT107I GGYRCC 1 cut(s) 230
BsrDI GCAATG 2 cut(s) 133, 844
BsrFI RCCGGY 2 cut(s) 583, 851
BsrI ACTGG 1 cut(s) 475
BssAI RCCGGY 2 cut(s) 583, 851
BssECI CCNNGG 2 cut(s) 163, 531
BssMI GATC 1 cut(s) 806
BssNAI GTATAC 1 cut(s) 394
BssT1I CCWWGG 2 cut(s) 163, 531
Bst1107I GTATAC 1 cut(s) 394
Bst6I CTCTTC 3 cut(s) 56, 82, 453
BstAPI GCANNNNNTGC 2 cut(s) 123, 621
BstBAI YACGTR 1 cut(s) 880
BstC8I GCNNGC 5 cut(s) 138, 250, 305, 541, 585
BstDEI CTNAG 8 cut(s) 19, 194, 299, 630, 681, 696, 781, 941
BstF5I GGATG 4 cut(s) 34, 581, 895, 898
BstHHI GCGC 1 cut(s) 863
BstKTI GATC 1 cut(s) 809
BstMAI GTCTC 3 cut(s) 9, 84, 655
BstMBI GATC 1 cut(s) 806
BstMWI GCNNNNNNNGC 7 cut(s) 123, 239, 304, 536, 621, 697, 794
BstNSI RCATGY 1 cut(s) 861
BstSCI CCNGG 1 cut(s) 703
BstSFI CTRYAG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 687
BstZ17I GTATAC 1 cut(s) 394
BsuRI GGCC 2 cut(s) 590, 911
BtgZI GCGATG 1 cut(s) 657
BtsCI GGATG 4 cut(s) 34, 581, 895, 898
BtsI GCAGTG 2 cut(s) 150, 421
BtsIMutI CAGTG 2 cut(s) 150, 421
BveI ACCTGC 2 cut(s) 108, 298
Cac8I GCNNGC 5 cut(s) 138, 250, 305, 541, 585
CaiI CAGNNNCTG 1 cut(s) 123
CfoI GCGC 1 cut(s) 863
Cfr10I RCCGGY 2 cut(s) 583, 851
CseI GACGC 1 cut(s) 275
Csp6I GTAC 3 cut(s) 316, 685, 877
CviAII CATG 2 cut(s) 493, 858
CviQI GTAC 3 cut(s) 316, 685, 877
DdeI CTNAG 8 cut(s) 19, 194, 299, 630, 681, 696, 781, 941
DpnI GATC 1 cut(s) 808
DpnII GATC 1 cut(s) 806
EaeI YGGCCR 1 cut(s) 588
Eam1104I CTCTTC 3 cut(s) 56, 82, 453
EarI CTCTTC 3 cut(s) 56, 82, 453
Eco130I CCWWGG 2 cut(s) 163, 531
Eco57I CTGAAG 3 cut(s) 126, 228, 750
EcoT14I CCWWGG 2 cut(s) 163, 531
ErhI CCWWGG 2 cut(s) 163, 531
FaeI CATG 2 cut(s) 496, 861
FatI CATG 2 cut(s) 492, 857
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 4 cut(s) 588, 613, 701, 912
FokI GGATG 4 cut(s) 41, 588, 885, 902
Fsp4HI GCNGC 4 cut(s) 588, 613, 701, 912
FspBI CTAG 1 cut(s) 789
GlaI GCGC 1 cut(s) 862
GluI GCNGC 4 cut(s) 588, 613, 701, 912
GsaI CCCAGC 1 cut(s) 411
HaeIII GGCC 2 cut(s) 590, 911
HapII CCGG 3 cut(s) 584, 705, 852
HgaI GACGC 1 cut(s) 275
HhaI GCGC 1 cut(s) 863
Hin1II CATG 2 cut(s) 496, 861
Hin6I GCGC 1 cut(s) 861
HinP1I GCGC 1 cut(s) 861
HindIII AAGCTT 2 cut(s) 134, 632
HinfI GANTC 4 cut(s) 17, 520, 546, 708
HpaII CCGG 3 cut(s) 584, 705, 852
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 2 cut(s) 394, 849
Hpy188I TCNGA 6 cut(s) 145, 429, 551, 769, 784, 907
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 2 cut(s) 394, 849
HpyAV CCTTC 3 cut(s) 774, 786, 912
HpyCH4IV ACGT 2 cut(s) 371, 879
HpyCH4V TGCA 7 cut(s) 126, 290, 389, 496, 647, 691, 837
HpyF10VI GCNNNNNNNGC 7 cut(s) 123, 239, 304, 536, 621, 697, 794
HpyF3I CTNAG 8 cut(s) 19, 194, 299, 630, 681, 696, 781, 941
HpySE526I ACGT 2 cut(s) 371, 879
Hsp92II CATG 2 cut(s) 496, 861
HspAI GCGC 1 cut(s) 861
KroI GCCGGC 1 cut(s) 583
KroNI GCCGGC 1 cut(s) 585
Kzo9I GATC 1 cut(s) 806
LmnI GCTCC 2 cut(s) 411, 536
Lsp1109I GCAGC 1 cut(s) 687
LweI GCATC 2 cut(s) 634, 960
MaeI CTAG 1 cut(s) 789
MaeII ACGT 2 cut(s) 371, 879
MaeIII GTNAC 2 cut(s) 553, 754
MalI GATC 1 cut(s) 808
MboI GATC 1 cut(s) 806
MboII GAAGA 4 cut(s) 43, 99, 440, 955
MhlI GDGCHC 1 cut(s) 541
MluCI AATT 3 cut(s) 291, 348, 921
MlyI GAGTC 2 cut(s) 11, 702
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 8 cut(s) 59, 87, 230, 347, 456, 750, 778, 901
MroNI GCCGGC 1 cut(s) 583
MroXI GAANNNNTTC 1 cut(s) 776
MseI TTAA 6 cut(s) 59, 285, 374, 453, 636, 657
MslI CAYNNNNRTG 2 cut(s) 491, 574
MspA1I CMGCKG 2 cut(s) 198, 248
MspI CCGG 3 cut(s) 584, 705, 852
MspR9I CCNGG 1 cut(s) 705
Mva1269I GAATGC 1 cut(s) 370
MwoI GCNNNNNNNGC 7 cut(s) 123, 239, 304, 536, 621, 697, 794
NaeI GCCGGC 1 cut(s) 585
NciI CCSGG 1 cut(s) 705
NdeII GATC 1 cut(s) 806
NgoMIV GCCGGC 1 cut(s) 583
NlaIII CATG 2 cut(s) 496, 861
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 2 cut(s) 553, 754
NspI RCATGY 1 cut(s) 861
PaqCI CACCTGC 1 cut(s) 298
PctI GAATGC 1 cut(s) 370
PdiI GCCGGC 1 cut(s) 585
PdmI GAANNNNTTC 1 cut(s) 776
PfeI GAWTC 2 cut(s) 520, 546
PflFI GACNNNGTC 1 cut(s) 95
PflMI CCANNNNNTGG 2 cut(s) 310, 572
PkrI GCNGC 4 cut(s) 589, 614, 702, 913
PleI GAGTC 2 cut(s) 11, 702
PpsI GAGTC 2 cut(s) 11, 702
Ppu21I YACGTR 1 cut(s) 880
PspFI CCCAGC 1 cut(s) 407
PspN4I GGNNCC 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 123
PsyI GACNNNGTC 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 248
RsaI GTAC 3 cut(s) 317, 686, 878
RsaNI GTAC 3 cut(s) 316, 685, 877
RseI CAYNNNNRTG 2 cut(s) 491, 574
SaqAI TTAA 6 cut(s) 59, 285, 374, 453, 636, 657
SatI GCNGC 4 cut(s) 588, 613, 701, 912
Sau3AI GATC 1 cut(s) 806
ScaI AGTACT 2 cut(s) 317, 686
SchI GAGTC 2 cut(s) 11, 702
ScrFI CCNGG 1 cut(s) 705
SduI GDGCHC 1 cut(s) 541
SfaNI GCATC 2 cut(s) 634, 960
SfcI CTRYAG 1 cut(s) 270
SmiMI CAYNNNNRTG 2 cut(s) 491, 574
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
Sse9I AATT 3 cut(s) 291, 348, 921
SsiI CCGC 4 cut(s) 198, 587, 612, 912
SspI AATATT 1 cut(s) 600
SspMI CTAG 1 cut(s) 789
StyD4I CCNGG 1 cut(s) 703
StyI CCWWGG 2 cut(s) 163, 531
TaiI ACGT 2 cut(s) 374, 882
TasI AATT 3 cut(s) 291, 348, 921
TatI WGTACW 2 cut(s) 315, 684
TauI GCSGC 3 cut(s) 590, 615, 914
TfiI GAWTC 2 cut(s) 520, 546
Tru1I TTAA 6 cut(s) 59, 285, 374, 453, 636, 657
Tru9I TTAA 6 cut(s) 59, 285, 374, 453, 636, 657
TscAI CASTG 2 cut(s) 157, 421
TseFI GTSAC 2 cut(s) 553, 754
TseI GCWGC 1 cut(s) 700
Tsp45I GTSAC 2 cut(s) 553, 754
TspDTI ATGAA 3 cut(s) 502, 519, 887
TspRI CASTG 2 cut(s) 157, 421
Tth111I GACNNNGTC 1 cut(s) 95
Van91I CCANNNNNTGG 2 cut(s) 310, 572
XapI RAATTY 1 cut(s) 921
XceI RCATGY 1 cut(s) 861
XmiI GTMKAC 1 cut(s) 393
XmnI GAANNNNTTC 1 cut(s) 776
XspI CTAG 1 cut(s) 789
ZrmI AGTACT 2 cut(s) 317, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.