Rmu_sc0016879.1_g000001

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016879.1
OG0016527
Physical Location & Seq
Forward (+)
1 .. 1857
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016879.1_g000001.1.cds

Sequence Viewer

Length: 1010 bp
tgctctatgatgtgggtgatgggcagcctttggttcctgcaatgttcatatttggagactcagttgtggatgtgggtaataacaacaacctcttctccttaatcaaatccaacttccccccttatggaagagactttgtcaatcacaatcccaccggcaggttctgcaatggaaagcttgcttcagacttcactgctgaaaaccttggctttgcttctcaccaaccagcttatctcagcggagaagccacaggaaaaagcctcttgattggtgccaactttgcttcagctggctctggctattatgacgctacagcaaagttatttaatgcaatttcactgagccagcaggtggagtactacaaggaatatcaaaataaggtggtgggaattggaggaaaagttaatgctacattaatcatatcgggtgcaatataccttgttagtgctgggagcagtgattttgttcagaactactacatcaatcctcttcttaacaaggtctatacgacagaccagttctctaacattctcatgcagtcctatgaaaatttcatacagaatctatatgccttgggagcacgcagaatcggagtgaccaccctgccaccacttggatgtctgccggcggccatcacaatatttggattaggcggcaacaagtgcgtggctaagcttaatggtgatgcagtctcatttaacaataagctaaatgccacatctcagtacttgcaaactaagctgcccggactcaaattggttgtctttgacatctaccagccactctataaccttgtcacgaagccttcagagaatgggttctcagaggcgaggagggcttgttgtggatcagggttgctggaaacatcaatactatgcaatgccaagtccaccggcacatgcgccaatgcgtcagagtatgtgttctgggatggttttcacccttcggaggccgcaaacaaaattttagcagatgatttgctgagtagtggcatctctctcatcttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

335

Amino Acids

36.0

Weight (kDa)

5.95

Isoelectric Point (pI)

28.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22810
fragaria_vesca FvH4_3g30030
malus_domestica MD11G1153800.v1.1
prunus_persica Prupe.6G116500_v2.0.a1 Prupe.6G116500_v2.0.a1
pyrus_communis pycom11g12550
rosa_chinensis RchiOBHm_Chr5g0055911
rosa_laevigata RLG00000035021
rosa_multiflora Rmu_sc0016879.1_g000001
rosa_roxburghii Rroxscaffold_1G00024440
rosa_samantha Rh5BG377000 Rh5CG400300 Rh5DG390500
rosa_wichuraiana Rw5G034390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 339
Acc36I ACCTGC 2 cut(s) 149, 339
AccB1I GGYRCC 1 cut(s) 271
AccB7I CCANNNNNTGG 2 cut(s) 351, 613
AciI CCGC 4 cut(s) 239, 628, 653, 953
AclWI GGATC 1 cut(s) 855
AcoI YGGCCR 1 cut(s) 629
AcsI RAATTY 2 cut(s) 549, 962
AcuI CTGAAG 3 cut(s) 167, 269, 791
AfaI GTAC 2 cut(s) 358, 727
AfiI CCNNNNNNNGG 5 cut(s) 124, 158, 351, 613, 948
AluBI AGCT 6 cut(s) 177, 229, 289, 675, 708, 741
AluI AGCT 6 cut(s) 177, 229, 289, 675, 708, 741
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 3 cut(s) 50, 125, 696
AlwI GGATC 1 cut(s) 855
AlwNI CAGNNNCTG 1 cut(s) 164
AoxI GGCC 2 cut(s) 629, 950
ApeKI GCWGC 2 cut(s) 24, 741
ApoI RAATTY 2 cut(s) 549, 962
ArsI GACNNNNNNTTYG 2 cut(s) 746, 778
AseI ATTAAT 1 cut(s) 415
Asp700I GAANNNNTTC 1 cut(s) 817
AspLEI GCGC 1 cut(s) 904
AsuC2I CCSGG 1 cut(s) 746
AsuHPI GGTGA 4 cut(s) 28, 211, 694, 931
BanI GGYRCC 1 cut(s) 271
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 2 cut(s) 36, 728
BccI CCATC 3 cut(s) 13, 640, 925
BcnI CCSGG 1 cut(s) 746
BcoDI GTCTC 3 cut(s) 50, 125, 696
BfmI CTRYAG 1 cut(s) 311
BfuAI ACCTGC 2 cut(s) 149, 339
BisI GCNGC 5 cut(s) 25, 629, 654, 742, 953
BlpI GCTNAGC 1 cut(s) 671
BlsI GCNGC 5 cut(s) 26, 630, 655, 743, 954
BmcAI AGTACT 2 cut(s) 358, 727
Bme1390I CCNGG 1 cut(s) 746
BmiI GGNNCC 2 cut(s) 35, 273
BmrFI CCNGG 1 cut(s) 746
BmsI GCATC 2 cut(s) 675, 1001
Bpu1102I GCTNAGC 1 cut(s) 671
BpuMI CCSGG 1 cut(s) 746
BsaJI CCNNGG 2 cut(s) 204, 572
BsaXI ACNNNNNCTCC 8 cut(s) 47, 77, 79, 109, 386, 416, 825, 855
Bsc4I CCNNNNNNNGG 5 cut(s) 124, 158, 351, 613, 948
Bse118I RCCGGY 3 cut(s) 154, 624, 892
Bse1I ACTGG 1 cut(s) 516
Bse3DI GCAATG 3 cut(s) 47, 174, 885
BseDI CCNNGG 2 cut(s) 204, 572
BseGI GGATG 3 cut(s) 75, 622, 936
BseLI CCNNNNNNNGG 5 cut(s) 124, 158, 351, 613, 948
BseMI GCAATG 3 cut(s) 47, 174, 885
BseMII CTCAG 6 cut(s) 74, 249, 331, 736, 836, 973
BseNI ACTGG 1 cut(s) 516
BseRI GAGGAG 1 cut(s) 846
BseXI GCAGC 2 cut(s) 36, 728
BseYI CCCAGC 1 cut(s) 448
BshFI GGCC 2 cut(s) 631, 952
BshNI GGYRCC 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 582
BsiSI CCGG 4 cut(s) 155, 625, 746, 893
BslI CCNNNNNNNGG 5 cut(s) 124, 158, 351, 613, 948
BsmAI GTCTC 3 cut(s) 50, 125, 696
BsnI GGCC 2 cut(s) 631, 952
Bsp1286I GDGCHC 1 cut(s) 582
Bsp143I GATC 1 cut(s) 847
Bsp1720I GCTNAGC 1 cut(s) 671
BspACI CCGC 4 cut(s) 239, 628, 653, 953
BspANI GGCC 2 cut(s) 631, 952
BspCNI CTCAG 6 cut(s) 73, 248, 332, 735, 835, 974
BspLI GGNNCC 2 cut(s) 35, 273
BspMI ACCTGC 2 cut(s) 149, 339
BspPI GGATC 1 cut(s) 855
BspT107I GGYRCC 1 cut(s) 271
BsrDI GCAATG 3 cut(s) 47, 174, 885
BsrFI RCCGGY 3 cut(s) 154, 624, 892
BsrI ACTGG 1 cut(s) 516
BssAI RCCGGY 3 cut(s) 154, 624, 892
BssECI CCNNGG 2 cut(s) 204, 572
BssMI GATC 1 cut(s) 847
BssT1I CCWWGG 2 cut(s) 204, 572
Bst6I CTCTTC 3 cut(s) 97, 123, 494
BstAPI GCANNNNNTGC 2 cut(s) 164, 662
BstC8I GCNNGC 5 cut(s) 179, 291, 346, 582, 626
BstDEI CTNAG 8 cut(s) 60, 235, 340, 671, 722, 737, 822, 982
BstF5I GGATG 3 cut(s) 75, 622, 936
BstHHI GCGC 1 cut(s) 904
BstKTI GATC 1 cut(s) 850
BstMAI GTCTC 3 cut(s) 50, 125, 696
BstMBI GATC 1 cut(s) 847
BstMWI GCNNNNNNNGC 6 cut(s) 164, 280, 577, 662, 738, 835
BstNSI RCATGY 1 cut(s) 902
BstSCI CCNGG 1 cut(s) 744
BstSFI CTRYAG 1 cut(s) 311
BstV1I GCAGC 2 cut(s) 36, 728
BsuRI GGCC 2 cut(s) 631, 952
BtsCI GGATG 3 cut(s) 75, 622, 936
BtsI GCAGTG 2 cut(s) 191, 462
BtsIMutI CAGTG 3 cut(s) 191, 337, 462
BveI ACCTGC 2 cut(s) 149, 339
Cac8I GCNNGC 5 cut(s) 179, 291, 346, 582, 626
CaiI CAGNNNCTG 1 cut(s) 164
CfoI GCGC 1 cut(s) 904
Cfr10I RCCGGY 3 cut(s) 154, 624, 892
CseI GACGC 2 cut(s) 316, 899
Csp6I GTAC 2 cut(s) 357, 726
CviAII CATG 2 cut(s) 534, 899
CviQI GTAC 2 cut(s) 357, 726
DdeI CTNAG 8 cut(s) 60, 235, 340, 671, 722, 737, 822, 982
DpnI GATC 1 cut(s) 849
DpnII GATC 1 cut(s) 847
EaeI YGGCCR 1 cut(s) 629
Eam1104I CTCTTC 3 cut(s) 97, 123, 494
EarI CTCTTC 3 cut(s) 97, 123, 494
Eco130I CCWWGG 2 cut(s) 204, 572
Eco57I CTGAAG 3 cut(s) 167, 269, 791
EcoT14I CCWWGG 2 cut(s) 204, 572
ErhI CCWWGG 2 cut(s) 204, 572
FaeI CATG 2 cut(s) 537, 902
FatI CATG 2 cut(s) 533, 898
Fnu4HI GCNGC 5 cut(s) 25, 629, 654, 742, 953
FokI GGATG 3 cut(s) 82, 629, 943
Fsp4HI GCNGC 5 cut(s) 25, 629, 654, 742, 953
GlaI GCGC 1 cut(s) 903
GluI GCNGC 5 cut(s) 25, 629, 654, 742, 953
GsaI CCCAGC 1 cut(s) 452
HaeIII GGCC 2 cut(s) 631, 952
HapII CCGG 4 cut(s) 155, 625, 746, 893
HgaI GACGC 2 cut(s) 316, 899
HhaI GCGC 1 cut(s) 904
Hin1II CATG 2 cut(s) 537, 902
Hin6I GCGC 1 cut(s) 902
HinP1I GCGC 1 cut(s) 902
HindIII AAGCTT 2 cut(s) 175, 673
HinfI GANTC 4 cut(s) 58, 561, 587, 749
HpaII CCGG 4 cut(s) 155, 625, 746, 893
HphI GGTGA 4 cut(s) 28, 211, 694, 931
Hpy166II GTNNAC 1 cut(s) 890
Hpy188I TCNGA 7 cut(s) 186, 470, 592, 810, 825, 915, 948
Hpy188III TCNNGA 2 cut(s) 264, 798
Hpy8I GTNNAC 1 cut(s) 890
HpyAV CCTTC 2 cut(s) 815, 953
HpyCH4V TGCA 8 cut(s) 40, 167, 331, 430, 537, 688, 732, 878
HpyF10VI GCNNNNNNNGC 6 cut(s) 164, 280, 577, 662, 738, 835
HpyF3I CTNAG 8 cut(s) 60, 235, 340, 671, 722, 737, 822, 982
Hsp92II CATG 2 cut(s) 537, 902
HspAI GCGC 1 cut(s) 902
KroI GCCGGC 1 cut(s) 624
KroNI GCCGGC 1 cut(s) 626
Kzo9I GATC 1 cut(s) 847
LmnI GCTCC 2 cut(s) 452, 577
Lsp1109I GCAGC 2 cut(s) 36, 728
LweI GCATC 2 cut(s) 675, 1001
MaeIII GTNAC 2 cut(s) 594, 795
MalI GATC 1 cut(s) 849
MboI GATC 1 cut(s) 847
MboII GAAGA 4 cut(s) 84, 140, 481, 996
MhlI GDGCHC 1 cut(s) 582
MluCI AATT 5 cut(s) 332, 389, 549, 754, 962
MlyI GAGTC 2 cut(s) 52, 743
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 8 cut(s) 100, 271, 388, 497, 819, 824, 827, 942
MroNI GCCGGC 1 cut(s) 624
MroXI GAANNNNTTC 1 cut(s) 817
MseI TTAA 7 cut(s) 100, 326, 404, 415, 494, 677, 698
MslI CAYNNNNRTG 2 cut(s) 532, 615
MspA1I CMGCKG 2 cut(s) 239, 289
MspI CCGG 4 cut(s) 155, 625, 746, 893
MspR9I CCNGG 1 cut(s) 746
MwoI GCNNNNNNNGC 6 cut(s) 164, 280, 577, 662, 738, 835
NaeI GCCGGC 1 cut(s) 626
NciI CCSGG 1 cut(s) 746
NdeII GATC 1 cut(s) 847
NgoMIV GCCGGC 1 cut(s) 624
NlaIII CATG 2 cut(s) 537, 902
NlaIV GGNNCC 2 cut(s) 35, 273
NmuCI GTSAC 2 cut(s) 594, 795
NspI RCATGY 1 cut(s) 902
PaqCI CACCTGC 1 cut(s) 339
PdiI GCCGGC 1 cut(s) 626
PdmI GAANNNNTTC 1 cut(s) 817
PfeI GAWTC 2 cut(s) 561, 587
PflFI GACNNNGTC 1 cut(s) 136
PflMI CCANNNNNTGG 2 cut(s) 351, 613
PkrI GCNGC 5 cut(s) 26, 630, 655, 743, 954
PleI GAGTC 2 cut(s) 52, 743
PpsI GAGTC 2 cut(s) 52, 743
PshBI ATTAAT 1 cut(s) 415
PspFI CCCAGC 1 cut(s) 448
PspN4I GGNNCC 2 cut(s) 35, 273
PstNI CAGNNNCTG 1 cut(s) 164
PsyI GACNNNGTC 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 289
RsaI GTAC 2 cut(s) 358, 727
RsaNI GTAC 2 cut(s) 357, 726
RseI CAYNNNNRTG 2 cut(s) 532, 615
SaqAI TTAA 7 cut(s) 100, 326, 404, 415, 494, 677, 698
SatI GCNGC 5 cut(s) 25, 629, 654, 742, 953
Sau3AI GATC 1 cut(s) 847
ScaI AGTACT 2 cut(s) 358, 727
SchI GAGTC 2 cut(s) 52, 743
ScrFI CCNGG 1 cut(s) 746
SduI GDGCHC 1 cut(s) 582
SfaNI GCATC 2 cut(s) 675, 1001
SfcI CTRYAG 1 cut(s) 311
SmiMI CAYNNNNRTG 2 cut(s) 532, 615
Sse9I AATT 5 cut(s) 332, 389, 549, 754, 962
SsiI CCGC 4 cut(s) 239, 628, 653, 953
SspI AATATT 1 cut(s) 641
StyD4I CCNGG 1 cut(s) 744
StyI CCWWGG 2 cut(s) 204, 572
TasI AATT 5 cut(s) 332, 389, 549, 754, 962
TatI WGTACW 2 cut(s) 356, 725
TauI GCSGC 3 cut(s) 631, 656, 955
TfiI GAWTC 2 cut(s) 561, 587
Tru1I TTAA 7 cut(s) 100, 326, 404, 415, 494, 677, 698
Tru9I TTAA 7 cut(s) 100, 326, 404, 415, 494, 677, 698
TscAI CASTG 3 cut(s) 198, 344, 462
TseFI GTSAC 2 cut(s) 594, 795
TseI GCWGC 2 cut(s) 24, 741
Tsp45I GTSAC 2 cut(s) 594, 795
TspDTI ATGAA 3 cut(s) 36, 543, 560
TspRI CASTG 3 cut(s) 198, 344, 462
Tth111I GACNNNGTC 1 cut(s) 136
Van91I CCANNNNNTGG 2 cut(s) 351, 613
VspI ATTAAT 1 cut(s) 415
XapI RAATTY 2 cut(s) 549, 962
XceI RCATGY 1 cut(s) 902
XmnI GAANNNNTTC 1 cut(s) 817
ZrmI AGTACT 2 cut(s) 358, 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.