AT5G22870

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015299
Physical Location & Seq
Reverse (-)
7646903 .. 7647679
777 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G22870.1

Sequence Viewer

Length: 624 bp
ATGTGTCACAAGCCCAAGCTAGAATTGATGCCGATGGAAACTTCGCCAGCGCAGCCATTGCGCCGCCCTAGCCTTATATGCTACATTTTTCTCGTTATACTAACTCTAATCTTCATGGCAGCTGTAGGTTTTCTCATTACATGGCTTGAAACCAAACCCAAGAAACTTCGTTACACTGTTGAAAACGCCTCGGTTCAAAACTTTAACCTTACCAACGACAATCACATGTCAGCTACATTCCAATTCACCATCCAATCGCACAACCCTAACCACAGAATCTCGGTTTACTACAGTTCCGTCGAGATATTCGTTAAATTCAAAGACCAGACGCTTGCGTTCGACACAGTGGAGCCGTTTCACCAACCGCGGATGAACGTTAAGCAGATTGATGAAACGTTGATTGCGGAAAACGTTGCCGTTTCAAAATCCAATGGTAAGGATTTGAGGTCTCAAAATTCGTTGGGAAAGATTGGGTTTGAAGTTTTTGTTAAGGCTAGGGTTAGGTTTAAAGTGGGGATATGGAAGTCATCACATCGTACAGCTAAGATTAAGTGTTCTCATGTCACGGTCTCTTTGTCGCAGCCTAACAAATCCCAAAATAGTTCATGTGATGCTGATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

207

Amino Acids

23.61

Weight (kDa)

9.58

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 84 - 184 8.2e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22870
fragaria_vesca FvH4_3g30480
malus_domestica MD03G1127800.v1.1 MD11G1149600.v1.1
prunus_persica Prupe.6G114100_v2.0.a1
pyrus_communis pycom11g12260
rosa_chinensis RchiOBHm_Chr5g0056431
rosa_laevigata RLG00000035098
rosa_multiflora Rmu_sc0000317.1_g000045
rosa_roxburghii Rroxscaffold_1G00023880
rosa_rugosa Rorug05G0300000
rosa_samantha Rh5AG370500 Rh5BG381800 Rh5CG404600 Rh5DG394600
rosa_wichuraiana Rw5G034700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 367
AciI CCGC 4 cut(s) 64, 365, 367, 404
AclI AACGTT 3 cut(s) 375, 395, 411
AcsI RAATTY 2 cut(s) 314, 454
AfaI GTAC 1 cut(s) 538
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 6 cut(s) 149, 182, 197, 319, 423, 479
AluBI AGCT 4 cut(s) 19, 122, 233, 542
AluI AGCT 4 cut(s) 19, 122, 233, 542
Alw26I GTCTC 2 cut(s) 453, 574
ApeKI GCWGC 3 cut(s) 52, 119, 580
ApoI RAATTY 2 cut(s) 314, 454
AspLEI GCGC 2 cut(s) 52, 63
AsuHPI GGTGA 2 cut(s) 238, 350
BbvI GCAGC 3 cut(s) 64, 131, 592
BccI CCATC 2 cut(s) 28, 257
BceAI ACGGC 2 cut(s) 337, 401
BcoDI GTCTC 2 cut(s) 453, 574
BfaI CTAG 3 cut(s) 20, 69, 495
BfmI CTRYAG 2 cut(s) 123, 289
BisI GCNGC 4 cut(s) 53, 64, 120, 581
BlsI GCNGC 4 cut(s) 54, 65, 121, 582
BmiI GGNNCC 1 cut(s) 351
BmsI GCATC 2 cut(s) 18, 601
BsaI GGTCTC 2 cut(s) 453, 574
BsaJI CCNNGG 2 cut(s) 189, 365
Bse3DI GCAATG 1 cut(s) 56
BseDI CCNNGG 2 cut(s) 189, 365
BseGI GGATG 2 cut(s) 249, 375
BseMI GCAATG 1 cut(s) 56
BseXI GCAGC 3 cut(s) 64, 131, 592
Bsh1236I CGCG 1 cut(s) 367
BsmAI GTCTC 2 cut(s) 453, 574
Bso31I GGTCTC 2 cut(s) 453, 574
BspACI CCGC 4 cut(s) 64, 365, 367, 404
BspFNI CGCG 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 351
BspTNI GGTCTC 2 cut(s) 453, 574
BsrDI GCAATG 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 189, 365
Bst4CI ACNGT 4 cut(s) 178, 293, 346, 568
BstAPI GCANNNNNTGC 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 48, 333
BstDEI CTNAG 1 cut(s) 543
BstDSI CCRYGG 1 cut(s) 365
BstF5I GGATG 2 cut(s) 249, 375
BstFNI CGCG 1 cut(s) 367
BstHHI GCGC 2 cut(s) 52, 63
BstMAI GTCTC 2 cut(s) 453, 574
BstMWI GCNNNNNNNGC 4 cut(s) 52, 58, 69, 78
BstNSI RCATGY 1 cut(s) 229
BstSFI CTRYAG 2 cut(s) 123, 289
BstUI CGCG 1 cut(s) 367
BstV1I GCAGC 3 cut(s) 64, 131, 592
BtgI CCRYGG 1 cut(s) 365
BtsCI GGATG 2 cut(s) 249, 375
BtsIMutI CAGTG 2 cut(s) 174, 351
Cac8I GCNNGC 2 cut(s) 48, 333
CfoI GCGC 2 cut(s) 52, 63
Cfr42I CCGCGG 1 cut(s) 368
CseI GACGC 1 cut(s) 337
Csp6I GTAC 1 cut(s) 537
CviAII CATG 5 cut(s) 115, 141, 226, 560, 606
CviQI GTAC 1 cut(s) 537
DdeI CTNAG 1 cut(s) 543
DraI TTTAAA 1 cut(s) 508
Eco31I GGTCTC 2 cut(s) 453, 574
FaeI CATG 5 cut(s) 118, 144, 229, 563, 609
FaiI YATR 9 cut(s) 77, 79, 98, 116, 142, 227, 520, 561, 607
FatI CATG 5 cut(s) 114, 140, 225, 559, 605
Fnu4HI GCNGC 4 cut(s) 53, 64, 120, 581
FokI GGATG 2 cut(s) 236, 382
Fsp4HI GCNGC 4 cut(s) 53, 64, 120, 581
FspBI CTAG 3 cut(s) 20, 69, 495
GlaI GCGC 2 cut(s) 51, 62
GluI GCNGC 4 cut(s) 53, 64, 120, 581
HgaI GACGC 1 cut(s) 337
HhaI GCGC 2 cut(s) 52, 63
Hin1II CATG 5 cut(s) 118, 144, 229, 563, 609
Hin6I GCGC 2 cut(s) 50, 61
HinP1I GCGC 2 cut(s) 50, 61
HinfI GANTC 1 cut(s) 276
HphI GGTGA 2 cut(s) 238, 350
Hpy166II GTNNAC 1 cut(s) 286
Hpy188III TCNNGA 1 cut(s) 301
Hpy8I GTNNAC 1 cut(s) 286
Hpy99I CGWCG 1 cut(s) 302
HpyCH4III ACNGT 4 cut(s) 178, 293, 346, 568
HpyCH4IV ACGT 3 cut(s) 375, 395, 411
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 58, 69, 78
HpyF3I CTNAG 1 cut(s) 543
HpySE526I ACGT 3 cut(s) 375, 395, 411
Hsp92II CATG 5 cut(s) 118, 144, 229, 563, 609
HspAI GCGC 2 cut(s) 50, 61
KspI CCGCGG 1 cut(s) 368
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 2 cut(s) 60, 338
Lsp1109I GCAGC 3 cut(s) 64, 131, 592
LweI GCATC 2 cut(s) 18, 601
MaeI CTAG 3 cut(s) 20, 69, 495
MaeII ACGT 3 cut(s) 375, 395, 411
MaeIII GTNAC 3 cut(s) 5, 170, 562
MboII GAAGA 1 cut(s) 103
MluCI AATT 4 cut(s) 23, 242, 314, 454
MnlI CCTC 2 cut(s) 199, 438
MseI TTAA 6 cut(s) 204, 312, 378, 489, 507, 549
MspA1I CMGCKG 2 cut(s) 122, 367
MvnI CGCG 1 cut(s) 367
MwoI GCNNNNNNNGC 4 cut(s) 52, 58, 69, 78
NlaIII CATG 5 cut(s) 118, 144, 229, 563, 609
NlaIV GGNNCC 1 cut(s) 351
NmuCI GTSAC 2 cut(s) 5, 562
NspI RCATGY 1 cut(s) 229
PciI ACATGT 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PfeI GAWTC 1 cut(s) 276
PkrI GCNGC 4 cut(s) 54, 65, 121, 582
PscI ACATGT 1 cut(s) 225
Psp1406I AACGTT 3 cut(s) 375, 395, 411
PspN4I GGNNCC 1 cut(s) 351
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 1 cut(s) 538
RsaNI GTAC 1 cut(s) 537
SacII CCGCGG 1 cut(s) 368
SaqAI TTAA 6 cut(s) 204, 312, 378, 489, 507, 549
SatI GCNGC 4 cut(s) 53, 64, 120, 581
SfaNI GCATC 2 cut(s) 18, 601
SfcI CTRYAG 2 cut(s) 123, 289
Sfr303I CCGCGG 1 cut(s) 368
SgrBI CCGCGG 1 cut(s) 368
Sse9I AATT 4 cut(s) 23, 242, 314, 454
SsiI CCGC 4 cut(s) 64, 365, 367, 404
SspMI CTAG 3 cut(s) 20, 69, 495
TaaI ACNGT 4 cut(s) 178, 293, 346, 568
TaiI ACGT 3 cut(s) 378, 398, 414
TaqI TCGA 2 cut(s) 300, 339
TasI AATT 4 cut(s) 23, 242, 314, 454
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 6 cut(s) 204, 312, 378, 489, 507, 549
Tru9I TTAA 6 cut(s) 204, 312, 378, 489, 507, 549
TscAI CASTG 2 cut(s) 181, 351
TseFI GTSAC 2 cut(s) 5, 562
TseI GCWGC 3 cut(s) 52, 119, 580
Tsp45I GTSAC 2 cut(s) 5, 562
TspDTI ATGAA 4 cut(s) 103, 386, 405, 594
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 2 cut(s) 181, 351
XapI RAATTY 2 cut(s) 314, 454
XceI RCATGY 1 cut(s) 229
XspI CTAG 3 cut(s) 20, 69, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.