MD03G1127800.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0015299
Physical Location & Seq
Reverse (-)
12438152 .. 12438748
597 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1127800.v1.1.491

Sequence Viewer

Length: 597 bp
ATGCCTACTTCTGCATCACAGCCCTCACAAGCACCCAAATCAAAGTCAAATCTAATTAGAATCATTGCCATAGTCTTGCTAGCTTTGATTGTCCTCTTGGGTCTTGTGGTGCTTATCACCTGGCTCGTTGTGAAGCCAAAACGCCTTGTTTACACCATCGAAAATGGTTCGATCCAAAACTTCAACCTAACGAATGACCACCTCTCAGCCAATTTTGATTTTGTAATAAGATCCTATAATCCCAACAAAAGAGTCTCCATATACTATGACTCTATTGGAGCTACTGTGAATTACAATGACCAGACTCTGGCATTTTCCGGGGTTGATCCCTTCTATCAGCGCCATCGAAATGTGACGCGCTTTGATGTCAAGTTCACAGCTCGCTCCGCTGCACTTTCCAGCCCCGTCTCTAAGGATCTAATGCTTGAGAAAAGATCAGGGAAGATTCAGTTTGACGTTTGGCTCAAGGCAAGGATTAGATTTAAGGTTGGAGCTTGGAAGTCACGCCACCGCACTCTAAGGGTTTCATGCTCCCCGGTGTTGGAGTTCTCAAGGCCTAAGAGTTTGAGGAGGACTTACTGTTATACTGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

199

Amino Acids

22.66

Weight (kDa)

10.37

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 76 - 177 6.3e-15 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22870
fragaria_vesca FvH4_3g30480
malus_domestica MD03G1127800.v1.1 MD11G1149600.v1.1
prunus_persica Prupe.6G114100_v2.0.a1
pyrus_communis pycom11g12260
rosa_chinensis RchiOBHm_Chr5g0056431
rosa_laevigata RLG00000035098
rosa_multiflora Rmu_sc0000317.1_g000045
rosa_roxburghii Rroxscaffold_1G00023880
rosa_rugosa Rorug05G0300000
rosa_samantha Rh5AG370500 Rh5BG381800 Rh5CG404600 Rh5DG394600
rosa_wichuraiana Rw5G034700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 307
AccII CGCG 1 cut(s) 358
AciI CCGC 2 cut(s) 387, 511
AclWI GGATC 4 cut(s) 166, 225, 320, 423
AfiI CCNNNNNNNGG 2 cut(s) 307, 541
AgsI TTSAA 1 cut(s) 184
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 4 cut(s) 83, 281, 380, 494
AluI AGCT 4 cut(s) 83, 281, 380, 494
Alw26I GTCTC 2 cut(s) 259, 412
AlwI GGATC 4 cut(s) 166, 225, 320, 423
AlwNI CAGNNNCTG 1 cut(s) 307
AoxI GGCC 1 cut(s) 554
ApeKI GCWGC 1 cut(s) 389
AspLEI GCGC 2 cut(s) 342, 360
AsuC2I CCSGG 2 cut(s) 319, 536
AsuHPI GGTGA 1 cut(s) 109
AsuNHI GCTAGC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 376
BccI CCATC 2 cut(s) 164, 351
BciT130I CCWGG 1 cut(s) 121
BcnI CCSGG 2 cut(s) 319, 536
BcoDI GTCTC 2 cut(s) 259, 412
BfaI CTAG 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 343
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
Bme1390I CCNGG 3 cut(s) 121, 319, 536
BmrFI CCNGG 3 cut(s) 121, 319, 536
BmsI GCATC 1 cut(s) 23
BmtI GCTAGC 1 cut(s) 83
BpuEI CTTGAG 3 cut(s) 446, 449, 535
BpuMI CCSGG 2 cut(s) 319, 536
BsaJI CCNNGG 2 cut(s) 318, 534
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 541
Bse3DI GCAATG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 2 cut(s) 318, 534
BseLI CCNNNNNNNGG 2 cut(s) 307, 541
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 219
BseRI GAGGAG 1 cut(s) 583
BseXI GCAGC 1 cut(s) 376
BsgI GTGCAG 1 cut(s) 375
Bsh1236I CGCG 1 cut(s) 358
BshFI GGCC 1 cut(s) 556
BsiSI CCGG 2 cut(s) 318, 536
BslI CCNNNNNNNGG 2 cut(s) 307, 541
BsmAI GTCTC 2 cut(s) 259, 412
BsmBI CGTCTC 1 cut(s) 412
BsnI GGCC 1 cut(s) 556
Bsp143I GATC 5 cut(s) 171, 230, 325, 415, 434
BspACI CCGC 2 cut(s) 387, 511
BspANI GGCC 1 cut(s) 556
BspCNI CTCAG 1 cut(s) 218
BspFNI CGCG 1 cut(s) 358
BspOI GCTAGC 1 cut(s) 83
BspPI GGATC 4 cut(s) 166, 225, 320, 423
BsrDI GCAATG 1 cut(s) 63
BssECI CCNNGG 2 cut(s) 318, 534
BssMI GATC 5 cut(s) 171, 230, 325, 415, 434
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 2 cut(s) 286, 581
BstC8I GCNNGC 2 cut(s) 81, 382
BstDEI CTNAG 4 cut(s) 205, 411, 518, 558
BstFNI CGCG 1 cut(s) 358
BstH2I RGCGCY 1 cut(s) 343
BstHHI GCGC 2 cut(s) 342, 360
BstKTI GATC 5 cut(s) 174, 233, 328, 418, 437
BstMAI GTCTC 2 cut(s) 259, 412
BstMBI GATC 5 cut(s) 171, 230, 325, 415, 434
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 3 cut(s) 119, 317, 534
BstUI CGCG 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 376
BstX2I RGATCY 2 cut(s) 230, 415
BstYI RGATCY 2 cut(s) 230, 415
BsuRI GGCC 1 cut(s) 556
Cac8I GCNNGC 2 cut(s) 81, 382
CaiI CAGNNNCTG 1 cut(s) 307
CfoI GCGC 2 cut(s) 342, 360
CseI GACGC 1 cut(s) 364
CviAII CATG 1 cut(s) 528
DdeI CTNAG 4 cut(s) 205, 411, 518, 558
DpnI GATC 5 cut(s) 173, 232, 327, 417, 436
DpnII GATC 5 cut(s) 171, 230, 325, 415, 434
Eco147I AGGCCT 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 119
Esp3I CGTCTC 1 cut(s) 412
FaeI CATG 1 cut(s) 531
FaiI YATR 7 cut(s) 71, 237, 260, 262, 267, 529, 585
FatI CATG 1 cut(s) 527
Fnu4HI GCNGC 1 cut(s) 390
Fsp4HI GCNGC 1 cut(s) 390
FspBI CTAG 1 cut(s) 80
GlaI GCGC 2 cut(s) 341, 359
GluI GCNGC 1 cut(s) 390
HaeII RGCGCY 1 cut(s) 343
HaeIII GGCC 1 cut(s) 556
HapII CCGG 2 cut(s) 318, 536
HgaI GACGC 1 cut(s) 364
HhaI GCGC 2 cut(s) 342, 360
Hin1II CATG 1 cut(s) 531
Hin6I GCGC 2 cut(s) 340, 358
HinP1I GCGC 2 cut(s) 340, 358
HinfI GANTC 5 cut(s) 60, 252, 269, 304, 445
HpaII CCGG 2 cut(s) 318, 536
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 151, 375
Hpy8I GTNNAC 2 cut(s) 151, 375
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 2 cut(s) 286, 581
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 2 cut(s) 14, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 4 cut(s) 205, 411, 518, 558
HpySE526I ACGT 1 cut(s) 456
Hsp92II CATG 1 cut(s) 531
HspAI GCGC 2 cut(s) 340, 358
Kzo9I GATC 5 cut(s) 171, 230, 325, 415, 434
LmnI GCTCC 4 cut(s) 278, 389, 491, 536
LpnPI CCDG 8 cut(s) 106, 133, 293, 314, 331, 412, 423, 549
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 1 cut(s) 23
MaeI CTAG 1 cut(s) 80
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 2 cut(s) 352, 501
MalI GATC 5 cut(s) 173, 232, 327, 417, 436
MboI GATC 5 cut(s) 171, 230, 325, 415, 434
MboII GAAGA 1 cut(s) 454
MflI RGATCY 2 cut(s) 230, 415
MluCI AATT 3 cut(s) 54, 211, 289
MlyI GAGTC 3 cut(s) 261, 263, 298
MmeI TCCRAC 2 cut(s) 469, 522
MnlI CCTC 5 cut(s) 34, 104, 212, 561, 564
MseI TTAA 1 cut(s) 483
MslI CAYNNNNRTG 1 cut(s) 348
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 2 cut(s) 318, 536
MspR9I CCNGG 3 cut(s) 121, 319, 536
MvaI CCWGG 1 cut(s) 121
MvnI CGCG 1 cut(s) 358
MwoI GCNNNNNNNGC 1 cut(s) 386
NciI CCSGG 2 cut(s) 319, 536
NdeII GATC 5 cut(s) 171, 230, 325, 415, 434
NheI GCTAGC 1 cut(s) 79
NlaIII CATG 1 cut(s) 531
NmuCI GTSAC 2 cut(s) 352, 501
PceI AGGCCT 1 cut(s) 556
PfeI GAWTC 2 cut(s) 60, 445
PflMI CCANNNNNTGG 1 cut(s) 307
PkrI GCNGC 1 cut(s) 391
PleI GAGTC 3 cut(s) 260, 263, 298
PpsI GAGTC 3 cut(s) 260, 263, 298
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PstNI CAGNNNCTG 1 cut(s) 307
PsuI RGATCY 2 cut(s) 230, 415
RseI CAYNNNNRTG 1 cut(s) 348
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 5 cut(s) 171, 230, 325, 415, 434
SchI GAGTC 3 cut(s) 261, 263, 298
ScrFI CCNGG 3 cut(s) 121, 319, 536
SetI ASST 9 cut(s) 85, 122, 189, 204, 283, 382, 459, 489, 496
SfaNI GCATC 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 3 cut(s) 425, 464, 550
SmoI CTYRAG 3 cut(s) 425, 464, 550
Sse9I AATT 3 cut(s) 54, 211, 289
SseBI AGGCCT 1 cut(s) 556
SsiI CCGC 2 cut(s) 387, 511
SspMI CTAG 1 cut(s) 80
StuI AGGCCT 1 cut(s) 556
StyD4I CCNGG 3 cut(s) 119, 317, 534
TaaI ACNGT 2 cut(s) 286, 581
TaiI ACGT 1 cut(s) 459
TaqI TCGA 3 cut(s) 159, 170, 346
TasI AATT 3 cut(s) 54, 211, 289
TfiI GAWTC 2 cut(s) 60, 445
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TseFI GTSAC 2 cut(s) 352, 501
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 2 cut(s) 352, 501
TspDTI ATGAA 1 cut(s) 516
Van91I CCANNNNNTGG 1 cut(s) 307
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.