RLG00000035098

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015299
Physical Location & Seq
Reverse (-)
60838989 .. 60839585
597 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035098

Sequence Viewer

Length: 597 bp
ATGCCTACTTCTACACCCCAAACCTCACAAGCAGGTAGAAGACCAGCTAGTCCGATTCGATTAATTGGTATCATCTTGCTAGCTATAGTTGTTCTTCTGGGTCTTGCTGTGCTCATCACTTGGCTAGTAGTCAAGCCTAAACGCCTTGTTTACACCATCGAAAATAGTTCAGTCAAGGACTACAACTTCACCAATGACCACCTCTCTGGCACTTTTGATTTCACTGTAAGGTCTTACAACCCCAACAAGAGAGTCTCGTTTTACTATGATTCCATCGAGGCTACAGTCAATTACAATGACCAGACATTGGCATTTTCTACTGTCGAGCCATTTTACCAGCGCCATCGAAATGTGACCCGATTCAACTTGGAGTTCGTAGCTAAATCCACTGCACTTCCCAGCTTTGTCTCCAAGGATTTCTTGCTCGAGAAAGCCACGGGTAAGGTTCAACTGGATATTTGGCTTAAGGCAAGAATAAGGTACAAGGTGGGAGCATGGAAGTCGAGGCATAGGACACTGAGGATTTCGTGTTCGCCGGTGTTCGAGTTCAACAGGTTCAAGAATTTGAAGAGGACTTACTGTTCTACAGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

199

Amino Acids

22.87

Weight (kDa)

10.08

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 75 - 177 4.9e-16 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22870
fragaria_vesca FvH4_3g30480
malus_domestica MD03G1127800.v1.1 MD11G1149600.v1.1
prunus_persica Prupe.6G114100_v2.0.a1
pyrus_communis pycom11g12260
rosa_chinensis RchiOBHm_Chr5g0056431
rosa_laevigata RLG00000035098
rosa_multiflora Rmu_sc0000317.1_g000045
rosa_roxburghii Rroxscaffold_1G00023880
rosa_rugosa Rorug05G0300000
rosa_samantha Rh5AG370500 Rh5BG381800 Rh5CG404600 Rh5DG394600
rosa_wichuraiana Rw5G034700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 48
Acc36I ACCTGC 1 cut(s) 23
AccB7I CCANNNNNTGG 1 cut(s) 307
AcsI RAATTY 1 cut(s) 562
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 1 cut(s) 307
AflII CTTAAG 1 cut(s) 464
AgsI TTSAA 5 cut(s) 364, 449, 550, 559, 568
AloI GAACNNNNNNTCC 4 cut(s) 514, 546, 565, 597
AluBI AGCT 4 cut(s) 47, 83, 380, 402
AluI AGCT 4 cut(s) 47, 83, 380, 402
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 2 cut(s) 259, 412
Ama87I CYCGRG 1 cut(s) 425
ApoI RAATTY 1 cut(s) 562
AseI ATTAAT 1 cut(s) 62
AspLEI GCGC 1 cut(s) 342
AsuHPI GGTGA 1 cut(s) 181
AsuNHI GCTAGC 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 425
BarI GAAGNNNNNNTAC 2 cut(s) 560, 592
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 114
BccI CCATC 3 cut(s) 164, 281, 351
BcgI CGANNNNNNTGC 2 cut(s) 483, 517
BcoDI GTCTC 2 cut(s) 259, 412
BfaI CTAG 3 cut(s) 48, 80, 125
BfmI CTRYAG 3 cut(s) 84, 282, 585
BfoI RGCGCY 1 cut(s) 343
BfrI CTTAAG 1 cut(s) 464
BfuAI ACCTGC 1 cut(s) 23
BmeT110I CYCGRG 1 cut(s) 425
BmtI GCTAGC 1 cut(s) 83
BpiI GAAGAC 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 411, 435
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse118I RCCGGY 1 cut(s) 535
Bse1I ACTGG 1 cut(s) 456
BseDI CCNNGG 2 cut(s) 411, 435
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 509
BseNI ACTGG 1 cut(s) 456
BseYI CCCAGC 1 cut(s) 398
BsgI GTGCAG 1 cut(s) 375
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 1 cut(s) 536
BslI CCNNNNNNNGG 1 cut(s) 307
BsmAI GTCTC 2 cut(s) 259, 412
BsoBI CYCGRG 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 510
BspMI ACCTGC 1 cut(s) 23
BspOI GCTAGC 1 cut(s) 83
BspTI CTTAAG 1 cut(s) 464
BsrFI RCCGGY 1 cut(s) 535
BsrI ACTGG 1 cut(s) 456
BssAI RCCGGY 1 cut(s) 535
BssECI CCNNGG 2 cut(s) 411, 435
BssT1I CCWWGG 1 cut(s) 411
Bst4CI ACNGT 4 cut(s) 226, 286, 322, 581
Bst6I CTCTTC 1 cut(s) 563
BstAFI CTTAAG 1 cut(s) 464
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 518
BstDSI CCRYGG 1 cut(s) 435
BstH2I RGCGCY 1 cut(s) 343
BstHHI GCGC 1 cut(s) 342
BstMAI GTCTC 2 cut(s) 259, 412
BstSFI CTRYAG 3 cut(s) 84, 282, 585
BstV2I GAAGAC 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 206
BtgI CCRYGG 1 cut(s) 435
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 3 cut(s) 222, 387, 515
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 81
CfoI GCGC 1 cut(s) 342
Cfr10I RCCGGY 1 cut(s) 535
Csp6I GTAC 1 cut(s) 481
CviAII CATG 1 cut(s) 495
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 1 cut(s) 518
DrdI GACNNNNNNGTC 1 cut(s) 48
DseDI GACNNNNNNGTC 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 563
EarI CTCTTC 1 cut(s) 563
Eco130I CCWWGG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 425
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 1 cut(s) 498
FaiI YATR 4 cut(s) 86, 267, 496, 510
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FatI CATG 1 cut(s) 494
FspBI CTAG 3 cut(s) 48, 80, 125
GlaI GCGC 1 cut(s) 341
GsaI CCCAGC 1 cut(s) 402
HaeII RGCGCY 1 cut(s) 343
HapII CCGG 1 cut(s) 536
HhaI GCGC 1 cut(s) 342
Hin1II CATG 1 cut(s) 498
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HinfI GANTC 4 cut(s) 55, 252, 269, 360
HpaII CCGG 1 cut(s) 536
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 2 cut(s) 427, 559
Hpy8I GTNNAC 1 cut(s) 151
HpyCH4III ACNGT 4 cut(s) 226, 286, 322, 581
HpyCH4V TGCA 1 cut(s) 392
HpyF3I CTNAG 1 cut(s) 518
Hsp92II CATG 1 cut(s) 498
HspAI GCGC 1 cut(s) 340
LmnI GCTCC 1 cut(s) 491
MaeI CTAG 3 cut(s) 48, 80, 125
MaeIII GTNAC 1 cut(s) 352
MboII GAAGA 3 cut(s) 51, 86, 580
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 3 cut(s) 63, 289, 562
MlyI GAGTC 1 cut(s) 261
MnlI CCTC 6 cut(s) 34, 212, 271, 498, 513, 564
MseI TTAA 2 cut(s) 62, 465
MslI CAYNNNNRTG 1 cut(s) 348
MspCI CTTAAG 1 cut(s) 464
MspI CCGG 1 cut(s) 536
NheI GCTAGC 1 cut(s) 79
NlaIII CATG 1 cut(s) 498
NmuCI GTSAC 1 cut(s) 352
PaeR7I CTCGAG 1 cut(s) 425
PfeI GAWTC 3 cut(s) 55, 269, 360
PflMI CCANNNNNTGG 1 cut(s) 307
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PshBI ATTAAT 1 cut(s) 62
PspFI CCCAGC 1 cut(s) 398
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 348
SaqAI TTAA 2 cut(s) 62, 465
SchI GAGTC 1 cut(s) 261
SduI GDGCHC 1 cut(s) 114
SfcI CTRYAG 3 cut(s) 84, 282, 585
Sfr274I CTCGAG 1 cut(s) 425
SgrAI CRCCGGYG 1 cut(s) 535
SlaI CTCGAG 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 2 cut(s) 425, 464
SmoI CTYRAG 2 cut(s) 425, 464
Sse9I AATT 3 cut(s) 63, 289, 562
SspMI CTAG 3 cut(s) 48, 80, 125
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 4 cut(s) 226, 286, 322, 581
TaqI TCGA 8 cut(s) 58, 159, 276, 324, 346, 426, 503, 543
TasI AATT 3 cut(s) 63, 289, 562
TfiI GAWTC 3 cut(s) 55, 269, 360
Tru1I TTAA 2 cut(s) 62, 465
Tru9I TTAA 2 cut(s) 62, 465
TscAI CASTG 3 cut(s) 229, 394, 522
TseFI GTSAC 1 cut(s) 352
Tsp45I GTSAC 1 cut(s) 352
TspRI CASTG 3 cut(s) 229, 394, 522
Van91I CCANNNNNTGG 1 cut(s) 307
Vha464I CTTAAG 1 cut(s) 464
VspI ATTAAT 1 cut(s) 62
XapI RAATTY 1 cut(s) 562
XhoI CTCGAG 1 cut(s) 425
XspI CTAG 3 cut(s) 48, 80, 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.