Rw5G034700

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0015299
Physical Location & Seq
Reverse (-)
59832083 .. 59833033
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G034700.1

Sequence Viewer

Length: 591 bp
ATGCCTACTTCTACACCCCCACCCTCACAAAGACCAGCTAGTAACCCGATTCGATTAATTGGTATCATCTTGCTAGCTATAGTTGTTCTTCTGGGTCTTGCTGTGCTCATCACTTGGCTAGTAGTCAAGCCTAAACGCCTTGTTTACACCATCGAAAATAGTTCAGTCAAGGACTACAACTTCACCAATGACCACCTCTCTGGCACTTTTGATTTCACTGTAAGGTCTTACAACCCCAACAAGAGAGTCTCGTTTTACTATGATTCCATCGAGGCTACAGTCAATTACAATGACCAGACATTGGCATTTTCTACTGTCGAGCCATTTTACCAGCGCCATCGAAATGTGACCCGATTCAACGTGGAGTTCGTAGCTAAAAACACTGCACTTCCCAGCTTTGTCGCCAAGGATTTCTTGCTCGAGAAAGCCACGGGTAAGGTTCAACTGGATATTTGGCTTAAGGCAAGAATAAGGTACAAGGTGGGAGCATGGAAATCGAGGCACAGGACACTGAGGGTTTCGTGTTCGCCGGTGTTCGAGTTCAACAGGTTCAAGAATTTGAAGAGGACTTACTGTTCTACAGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

196

Amino Acids

22.65

Weight (kDa)

10.0

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 73 - 175 8.6e-17 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22870
fragaria_vesca FvH4_3g30480
malus_domestica MD03G1127800.v1.1 MD11G1149600.v1.1
prunus_persica Prupe.6G114100_v2.0.a1
pyrus_communis pycom11g12260
rosa_chinensis RchiOBHm_Chr5g0056431
rosa_laevigata RLG00000035098
rosa_multiflora Rmu_sc0000317.1_g000045
rosa_roxburghii Rroxscaffold_1G00023880
rosa_rugosa Rorug05G0300000
rosa_samantha Rh5AG370500 Rh5BG381800 Rh5CG404600 Rh5DG394600
rosa_wichuraiana Rw5G034700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 301
AcsI RAATTY 1 cut(s) 556
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 1 cut(s) 301
AflII CTTAAG 1 cut(s) 458
AgsI TTSAA 5 cut(s) 358, 443, 544, 553, 562
AloI GAACNNNNNNTCC 2 cut(s) 559, 591
AluBI AGCT 4 cut(s) 38, 77, 374, 396
AluI AGCT 4 cut(s) 38, 77, 374, 396
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 253
Ama87I CYCGRG 1 cut(s) 419
ApoI RAATTY 1 cut(s) 556
AseI ATTAAT 1 cut(s) 56
AspLEI GCGC 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 175
AsuNHI GCTAGC 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 419
BarI GAAGNNNNNNTAC 2 cut(s) 554, 586
Bbv12I GWGCWC 1 cut(s) 108
BccI CCATC 3 cut(s) 158, 275, 345
BcgI CGANNNNNNTGC 2 cut(s) 477, 511
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 3 cut(s) 39, 74, 119
BfmI CTRYAG 3 cut(s) 78, 276, 579
BfoI RGCGCY 1 cut(s) 337
BfrI CTTAAG 1 cut(s) 458
BmeT110I CYCGRG 1 cut(s) 419
BmtI GCTAGC 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 405, 429
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse118I RCCGGY 1 cut(s) 529
Bse1I ACTGG 1 cut(s) 450
BseDI CCNNGG 2 cut(s) 405, 429
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 503
BseNI ACTGG 1 cut(s) 450
BseYI CCCAGC 1 cut(s) 392
BsgI GTGCAG 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 419
BsiSI CCGG 1 cut(s) 530
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 253
BsoBI CYCGRG 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 504
BspOI GCTAGC 1 cut(s) 77
BspTI CTTAAG 1 cut(s) 458
BsrFI RCCGGY 1 cut(s) 529
BsrI ACTGG 1 cut(s) 450
BssAI RCCGGY 1 cut(s) 529
BssECI CCNNGG 2 cut(s) 405, 429
BssT1I CCWWGG 1 cut(s) 405
Bst4CI ACNGT 4 cut(s) 220, 280, 316, 575
Bst6I CTCTTC 1 cut(s) 557
BstAFI CTTAAG 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 512
BstDSI CCRYGG 1 cut(s) 429
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstMAI GTCTC 1 cut(s) 253
BstSFI CTRYAG 3 cut(s) 78, 276, 579
BstXI CCANNNNNNTGG 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 429
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 3 cut(s) 216, 381, 509
Cac8I GCNNGC 1 cut(s) 75
CfoI GCGC 1 cut(s) 336
Cfr10I RCCGGY 1 cut(s) 529
Csp6I GTAC 1 cut(s) 475
CviAII CATG 1 cut(s) 489
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 1 cut(s) 512
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
Eco130I CCWWGG 1 cut(s) 405
Eco88I CYCGRG 1 cut(s) 419
EcoT14I CCWWGG 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 1 cut(s) 492
FaiI YATR 3 cut(s) 80, 261, 490
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FatI CATG 1 cut(s) 488
FspBI CTAG 3 cut(s) 39, 74, 119
GlaI GCGC 1 cut(s) 335
GsaI CCCAGC 1 cut(s) 396
HaeII RGCGCY 1 cut(s) 337
HapII CCGG 1 cut(s) 530
HhaI GCGC 1 cut(s) 336
Hin1II CATG 1 cut(s) 492
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HinfI GANTC 4 cut(s) 49, 246, 263, 354
HpaII CCGG 1 cut(s) 530
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 421, 553
Hpy8I GTNNAC 1 cut(s) 145
HpyCH4III ACNGT 4 cut(s) 220, 280, 316, 575
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 1 cut(s) 386
HpyF3I CTNAG 1 cut(s) 512
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 1 cut(s) 492
HspAI GCGC 1 cut(s) 334
LmnI GCTCC 1 cut(s) 485
MaeI CTAG 3 cut(s) 39, 74, 119
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 2 cut(s) 41, 346
MboII GAAGA 2 cut(s) 80, 574
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 3 cut(s) 57, 283, 556
MlyI GAGTC 1 cut(s) 255
MnlI CCTC 6 cut(s) 34, 206, 265, 492, 507, 558
MseI TTAA 2 cut(s) 56, 459
MslI CAYNNNNRTG 1 cut(s) 342
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 1 cut(s) 530
NheI GCTAGC 1 cut(s) 73
NlaIII CATG 1 cut(s) 492
NmuCI GTSAC 1 cut(s) 346
PaeR7I CTCGAG 1 cut(s) 419
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PfeI GAWTC 3 cut(s) 49, 263, 354
PflMI CCANNNNNTGG 1 cut(s) 301
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PshBI ATTAAT 1 cut(s) 56
PspFI CCCAGC 1 cut(s) 392
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 2 cut(s) 56, 459
SchI GAGTC 1 cut(s) 255
SduI GDGCHC 1 cut(s) 108
SfcI CTRYAG 3 cut(s) 78, 276, 579
Sfr274I CTCGAG 1 cut(s) 419
SgrAI CRCCGGYG 1 cut(s) 529
SlaI CTCGAG 1 cut(s) 419
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 2 cut(s) 419, 458
SmoI CTYRAG 2 cut(s) 419, 458
Sse9I AATT 3 cut(s) 57, 283, 556
SspMI CTAG 3 cut(s) 39, 74, 119
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 4 cut(s) 220, 280, 316, 575
TaiI ACGT 1 cut(s) 363
TaqI TCGA 8 cut(s) 52, 153, 270, 318, 340, 420, 497, 537
TasI AATT 3 cut(s) 57, 283, 556
TfiI GAWTC 3 cut(s) 49, 263, 354
Tru1I TTAA 2 cut(s) 56, 459
Tru9I TTAA 2 cut(s) 56, 459
TscAI CASTG 3 cut(s) 223, 388, 516
TseFI GTSAC 1 cut(s) 346
Tsp45I GTSAC 1 cut(s) 346
TspRI CASTG 3 cut(s) 223, 388, 516
Van91I CCANNNNNTGG 1 cut(s) 301
Vha464I CTTAAG 1 cut(s) 458
VspI ATTAAT 1 cut(s) 56
XapI RAATTY 1 cut(s) 556
XhoI CTCGAG 1 cut(s) 419
XspI CTAG 3 cut(s) 39, 74, 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.