FvH4_3g30480

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015299
Physical Location & Seq
Reverse (-)
23754879 .. 23755908
1030 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30480.t1

Sequence Viewer

Length: 600 bp
ATGCCTACTGTTACACCCCAACCCTCACAAACACCCAGAAGACCAGCTCCAAACCCAATTCGATTGATTGGTATCATCTTGCTAGCCCTAGTTATTCTTCTAGGTCTTGCTGTGCTCATTACTTGGCTAGTAGTCAAGCCTAAACGCCTCGTTTACACCATCGAAAATAGTTCAATCAAGGGCTACAACTTAACCAATGACCACCTCTCTGCCACTTTTGATTTCACCGTAAGGTCTTACAACCCCAACAAGAGAGTCTCGTTTTACTATGATTCCATCGAGGCTACTGTCAATTACAATGACCAGACATTGGCGTTTTCTGCTGTCGAGCCATTTTACCAGCGCCATCGTAATGTGACTCGATTCAACGTGGAGTTCGTTGCTAAATCCACTGCGCTTCCCAGCTTTGTCTCCAAGGATTTCTTGCTCGAGAAAGCTACCGGTAAGGTTCAACTGGATGTTTGGCTCAAGGCAAGGATAAGGTACAAGGTAGGAGCATGGAAATCCAGGCATAGGACATTGAGAATTTCGTGCTCGCCGGTGTTGGAGTTCAACAGGTTCAAGAATTTGAAGAGGACTTATTGTTCTACAGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

200

Amino Acids

22.93

Weight (kDa)

10.15

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 76 - 178 4.8e-16 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22870
fragaria_vesca FvH4_3g30480
malus_domestica MD03G1127800.v1.1 MD11G1149600.v1.1
prunus_persica Prupe.6G114100_v2.0.a1
pyrus_communis pycom11g12260
rosa_chinensis RchiOBHm_Chr5g0056431
rosa_laevigata RLG00000035098
rosa_multiflora Rmu_sc0000317.1_g000045
rosa_roxburghii Rroxscaffold_1G00023880
rosa_rugosa Rorug05G0300000
rosa_samantha Rh5AG370500 Rh5BG381800 Rh5CG404600 Rh5DG394600
rosa_wichuraiana Rw5G034700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 310
AcsI RAATTY 2 cut(s) 525, 565
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 2 cut(s) 310, 513
AgeI ACCGGT 1 cut(s) 440
AgsI TTSAA 6 cut(s) 174, 367, 452, 553, 562, 571
AjnI CCWGG 1 cut(s) 506
AloI GAACNNNNNNTCC 2 cut(s) 568, 600
AluBI AGCT 3 cut(s) 47, 405, 437
AluI AGCT 3 cut(s) 47, 405, 437
Alw21I GWGCWC 2 cut(s) 117, 536
Alw26I GTCTC 2 cut(s) 262, 415
Ama87I CYCGRG 1 cut(s) 428
ApoI RAATTY 2 cut(s) 525, 565
AsiGI ACCGGT 1 cut(s) 440
AspLEI GCGC 2 cut(s) 345, 397
AsuHPI GGTGA 1 cut(s) 217
AsuNHI GCTAGC 1 cut(s) 82
AvaI CYCGRG 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 2 cut(s) 117, 536
BccI CCATC 3 cut(s) 167, 284, 354
BciT130I CCWGG 1 cut(s) 508
BcoDI GTCTC 2 cut(s) 262, 415
BfaI CTAG 4 cut(s) 83, 89, 101, 128
BfmI CTRYAG 1 cut(s) 588
BfoI RGCGCY 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 508
BmeT110I CYCGRG 1 cut(s) 428
BmrFI CCNGG 1 cut(s) 508
BmtI GCTAGC 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 452
BsaBI GATNNNNATC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 414
BsaWI WCCGGW 1 cut(s) 440
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 513
Bse118I RCCGGY 2 cut(s) 440, 538
Bse1I ACTGG 1 cut(s) 459
Bse8I GATNNNNATC 1 cut(s) 71
BseBI CCWGG 1 cut(s) 508
BseDI CCNNGG 1 cut(s) 414
BseGI GGATG 1 cut(s) 463
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 2 cut(s) 310, 513
BseNI ACTGG 1 cut(s) 459
BseYI CCCAGC 1 cut(s) 401
BshTI ACCGGT 1 cut(s) 440
BsiHKAI GWGCWC 2 cut(s) 117, 536
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 2 cut(s) 441, 539
BslI CCNNNNNNNGG 2 cut(s) 310, 513
BsmAI GTCTC 2 cut(s) 262, 415
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 2 cut(s) 117, 536
BspOI GCTAGC 1 cut(s) 86
BsrFI RCCGGY 2 cut(s) 440, 538
BsrI ACTGG 1 cut(s) 459
BssAI RCCGGY 2 cut(s) 440, 538
BssECI CCNNGG 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 508
Bst4CI ACNGT 3 cut(s) 10, 229, 289
Bst6I CTCTTC 1 cut(s) 566
BstC8I GCNNGC 2 cut(s) 84, 536
BstF5I GGATG 1 cut(s) 463
BstH2I RGCGCY 1 cut(s) 346
BstHHI GCGC 2 cut(s) 345, 397
BstMAI GTCTC 2 cut(s) 262, 415
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstNI CCWGG 1 cut(s) 508
BstSCI CCNGG 1 cut(s) 506
BstSFI CTRYAG 1 cut(s) 588
BstV2I GAAGAC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 463
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 2 cut(s) 84, 536
CfoI GCGC 2 cut(s) 345, 397
Cfr10I RCCGGY 2 cut(s) 440, 538
Csp6I GTAC 1 cut(s) 484
CspAI ACCGGT 1 cut(s) 440
CviAII CATG 1 cut(s) 498
CviQI GTAC 1 cut(s) 484
Eam1104I CTCTTC 1 cut(s) 566
EarI CTCTTC 1 cut(s) 566
Eco130I CCWWGG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 506
EcoT14I CCWWGG 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 1 cut(s) 501
FaiI YATR 3 cut(s) 270, 499, 513
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FatI CATG 1 cut(s) 497
FokI GGATG 1 cut(s) 470
FspBI CTAG 4 cut(s) 83, 89, 101, 128
GlaI GCGC 2 cut(s) 344, 396
GsaI CCCAGC 1 cut(s) 405
HaeII RGCGCY 1 cut(s) 346
HapII CCGG 2 cut(s) 441, 539
HhaI GCGC 2 cut(s) 345, 397
Hin1II CATG 1 cut(s) 501
Hin6I GCGC 2 cut(s) 343, 395
HinP1I GCGC 2 cut(s) 343, 395
HinfI GANTC 4 cut(s) 255, 272, 358, 363
HpaII CCGG 2 cut(s) 441, 539
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 154
Hpy188III TCNNGA 2 cut(s) 430, 562
Hpy8I GTNNAC 1 cut(s) 154
HpyCH4III ACNGT 3 cut(s) 10, 229, 289
HpyCH4IV ACGT 1 cut(s) 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpySE526I ACGT 1 cut(s) 369
Hsp92II CATG 1 cut(s) 501
HspAI GCGC 2 cut(s) 343, 395
LmnI GCTCC 2 cut(s) 52, 494
MaeI CTAG 4 cut(s) 83, 89, 101, 128
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 2 cut(s) 10, 355
MboII GAAGA 3 cut(s) 51, 89, 583
MhlI GDGCHC 2 cut(s) 117, 536
MluCI AATT 4 cut(s) 57, 292, 525, 565
MlyI GAGTC 2 cut(s) 264, 352
MmeI TCCRAC 1 cut(s) 525
MnlI CCTC 5 cut(s) 34, 158, 215, 274, 567
MseI TTAA 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 351
MspI CCGG 2 cut(s) 441, 539
MspR9I CCNGG 1 cut(s) 508
MvaI CCWGG 1 cut(s) 508
MwoI GCNNNNNNNGC 1 cut(s) 320
NheI GCTAGC 1 cut(s) 82
NlaIII CATG 1 cut(s) 501
NmuCI GTSAC 1 cut(s) 355
PaeR7I CTCGAG 1 cut(s) 428
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PfeI GAWTC 2 cut(s) 272, 363
PflMI CCANNNNNTGG 1 cut(s) 310
PinAI ACCGGT 1 cut(s) 440
PleI GAGTC 2 cut(s) 263, 352
PpsI GAGTC 2 cut(s) 263, 352
Psp6I CCWGG 1 cut(s) 506
PspFI CCCAGC 1 cut(s) 401
PspGI CCWGG 1 cut(s) 506
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
RseI CAYNNNNRTG 1 cut(s) 351
SaqAI TTAA 1 cut(s) 191
SchI GAGTC 2 cut(s) 264, 352
ScrFI CCNGG 1 cut(s) 508
SduI GDGCHC 2 cut(s) 117, 536
SfcI CTRYAG 1 cut(s) 588
Sfr274I CTCGAG 1 cut(s) 428
SgrAI CRCCGGYG 1 cut(s) 538
SlaI CTCGAG 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 351
SmlI CTYRAG 2 cut(s) 428, 467
SmoI CTYRAG 2 cut(s) 428, 467
Sse9I AATT 4 cut(s) 57, 292, 525, 565
SspMI CTAG 4 cut(s) 83, 89, 101, 128
StyD4I CCNGG 1 cut(s) 506
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 3 cut(s) 10, 229, 289
TaiI ACGT 1 cut(s) 372
TaqI TCGA 6 cut(s) 61, 162, 279, 327, 361, 429
TasI AATT 4 cut(s) 57, 292, 525, 565
TfiI GAWTC 2 cut(s) 272, 363
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 1 cut(s) 355
Tsp45I GTSAC 1 cut(s) 355
TspRI CASTG 1 cut(s) 397
Van91I CCANNNNNTGG 1 cut(s) 310
XapI RAATTY 2 cut(s) 525, 565
XhoI CTCGAG 1 cut(s) 428
XspI CTAG 4 cut(s) 83, 89, 101, 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.