Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000317.1

Orthogroup ID

OG0015299

Physical Location & Seq

Genomic Coordinates Reverse (-)

235530 .. 236120

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000317.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgcctacttctacaccccgaccctcacaaagaccagctagtaacccgattcgattaattggtatcatcttgctagctatagttgttcttctgggtcttgctgtgctcatcacttggctagtagtcaagcctaaacgccttgtttacaccatcgaaaatagttcagtcaaggactacaacttcaccaatgaccacctctctggcacttttgatttcactgtaaggtcttacaaccccaacaagagagtctcgttttactatgattccatcgaggctacagtcaattacaatgaccagacattggcattttctactgtcaagccattttaccagcgccatcgaaatgtgacccgattcaacgtggagttcgtagctaaaaacactgcacttcccagctttgtcgccaaggatttcttgctcgagaaagccacgggtaaggttcaactggatatttggcttaaggcaagaataaggtacaaggtgggagcatggaagtcgaggcacaggacactgagggtttcgtgttcgccggtgttcgagttcaacaggttcaagaatttgaagaggacttactgttctacagaactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

196

Amino Acids

22.7

Weight (kDa)

10.18

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22870
fragaria_vesca	FvH4_3g30480
malus_domestica	MD03G1127800.v1.1 MD11G1149600.v1.1
prunus_persica	Prupe.6G114100_v2.0.a1
pyrus_communis	pycom11g12260
rosa_chinensis	RchiOBHm_Chr5g0056431
rosa_laevigata	RLG00000035098
rosa_multiflora	Rmu_sc0000317.1_g000045
rosa_roxburghii	Rroxscaffold_1G00023880
rosa_rugosa	Rorug05G0300000
rosa_samantha	Rh5AG370500 Rh5BG381800 Rh5CG404600 Rh5DG394600
rosa_wichuraiana	Rw5G034700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	556
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflII	CTTAAG	1 cut(s)	458
AgsI	TTSAA	5 cut(s)	358, 443, 544, 553, 562
AloI	GAACNNNNNNTCC	2 cut(s)	559, 591
AluBI	AGCT	4 cut(s)	38, 77, 374, 396
AluI	AGCT	4 cut(s)	38, 77, 374, 396
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	419
ApoI	RAATTY	1 cut(s)	556
AseI	ATTAAT	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	175
AsuNHI	GCTAGC	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	419
BarI	GAAGNNNNNNTAC	2 cut(s)	554, 586
Bbv12I	GWGCWC	1 cut(s)	108
BccI	CCATC	3 cut(s)	158, 275, 345
BcgI	CGANNNNNNTGC	2 cut(s)	477, 511
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	3 cut(s)	39, 74, 119
BfmI	CTRYAG	3 cut(s)	78, 276, 579
BfoI	RGCGCY	1 cut(s)	337
BfrI	CTTAAG	1 cut(s)	458
BmeT110I	CYCGRG	1 cut(s)	419
BmtI	GCTAGC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	405, 429
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse118I	RCCGGY	1 cut(s)	529
Bse1I	ACTGG	1 cut(s)	450
BseDI	CCNNGG	2 cut(s)	405, 429
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	503
BseNI	ACTGG	1 cut(s)	450
BseYI	CCCAGC	1 cut(s)	392
BsgI	GTGCAG	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	530
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	504
BspOI	GCTAGC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	529
BsrI	ACTGG	1 cut(s)	450
BssAI	RCCGGY	1 cut(s)	529
BssECI	CCNNGG	2 cut(s)	405, 429
BssT1I	CCWWGG	1 cut(s)	405
Bst4CI	ACNGT	4 cut(s)	220, 280, 316, 575
Bst6I	CTCTTC	1 cut(s)	557
BstAFI	CTTAAG	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	512
BstDSI	CCRYGG	1 cut(s)	429
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	336
BstMAI	GTCTC	1 cut(s)	253
BstSFI	CTRYAG	3 cut(s)	78, 276, 579
BstXI	CCANNNNNNTGG	1 cut(s)	200
BtgI	CCRYGG	1 cut(s)	429
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	3 cut(s)	216, 381, 509
Cac8I	GCNNGC	1 cut(s)	75
CfoI	GCGC	1 cut(s)	336
Cfr10I	RCCGGY	1 cut(s)	529
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	1 cut(s)	489
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	1 cut(s)	512
Eam1104I	CTCTTC	1 cut(s)	557
EarI	CTCTTC	1 cut(s)	557
Eco130I	CCWWGG	1 cut(s)	405
Eco88I	CYCGRG	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	405
FaeI	CATG	1 cut(s)	492
FaiI	YATR	3 cut(s)	80, 261, 490
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FatI	CATG	1 cut(s)	488
FspBI	CTAG	3 cut(s)	39, 74, 119
GlaI	GCGC	1 cut(s)	335
GsaI	CCCAGC	1 cut(s)	396
HaeII	RGCGCY	1 cut(s)	337
HapII	CCGG	1 cut(s)	530
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	1 cut(s)	492
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HinfI	GANTC	4 cut(s)	49, 246, 263, 354
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188III	TCNNGA	2 cut(s)	421, 553
Hpy8I	GTNNAC	1 cut(s)	145
HpyCH4III	ACNGT	4 cut(s)	220, 280, 316, 575
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	1 cut(s)	386
HpyF3I	CTNAG	1 cut(s)	512
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	1 cut(s)	492
HspAI	GCGC	1 cut(s)	334
LmnI	GCTCC	1 cut(s)	485
MaeI	CTAG	3 cut(s)	39, 74, 119
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	2 cut(s)	41, 346
MboII	GAAGA	2 cut(s)	80, 574
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	3 cut(s)	57, 283, 556
MlyI	GAGTC	1 cut(s)	255
MnlI	CCTC	6 cut(s)	34, 206, 265, 492, 507, 558
MseI	TTAA	2 cut(s)	56, 459
MslI	CAYNNNNRTG	1 cut(s)	342
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	1 cut(s)	530
NheI	GCTAGC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	492
NmuCI	GTSAC	1 cut(s)	346
PaeR7I	CTCGAG	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PfeI	GAWTC	3 cut(s)	49, 263, 354
PflMI	CCANNNNNTGG	1 cut(s)	301
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PshBI	ATTAAT	1 cut(s)	56
PspFI	CCCAGC	1 cut(s)	392
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	56, 459
SchI	GAGTC	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	108
SfcI	CTRYAG	3 cut(s)	78, 276, 579
Sfr274I	CTCGAG	1 cut(s)	419
SgrAI	CRCCGGYG	1 cut(s)	529
SlaI	CTCGAG	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	2 cut(s)	419, 458
SmoI	CTYRAG	2 cut(s)	419, 458
Sse9I	AATT	3 cut(s)	57, 283, 556
SspMI	CTAG	3 cut(s)	39, 74, 119
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	4 cut(s)	220, 280, 316, 575
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	7 cut(s)	52, 153, 270, 340, 420, 497, 537
TasI	AATT	3 cut(s)	57, 283, 556
TfiI	GAWTC	3 cut(s)	49, 263, 354
Tru1I	TTAA	2 cut(s)	56, 459
Tru9I	TTAA	2 cut(s)	56, 459
TscAI	CASTG	3 cut(s)	223, 388, 516
TseFI	GTSAC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	346
TspRI	CASTG	3 cut(s)	223, 388, 516
Van91I	CCANNNNNTGG	1 cut(s)	301
Vha464I	CTTAAG	1 cut(s)	458
VspI	ATTAAT	1 cut(s)	56
XapI	RAATTY	1 cut(s)	556
XhoI	CTCGAG	1 cut(s)	419
XspI	CTAG	3 cut(s)	39, 74, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.