MD11G1149600.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015299
Physical Location & Seq
Forward (+)
14183557 .. 14184153
597 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1149600.v1.1.491

Sequence Viewer

Length: 597 bp
ATGCCTACTTCTTCATCACAACCCTCGCAAGCACCAAAAGCAAAGTCAAATCTAATTAGAACCATTGCTATAGTCTTGCTAGCTTCAATTGTCATTTTGGGTCTTGTGGTGCTCATCACCTGGCTCATTGTGAGGCCGAAACGCCTTGTTTACACCATCGAAGATGGTTCGATCCAAAACTTCAACCTAACCAATAACCACCTCTCAGCGGATTTTGATTTTGTCATCAGATCCTATAATCCCAACAAAAGAGTCTCCATATACTATGACTCTATTGGCGCTACAGTGAATTACAATGACCAGACTCTGGCATTTTCCGGGATTGAACCCTTCTATCAGCGCCGTCGAAATGTGACCCGCTTTGATGTCAAGTTCACGGCTCCCTCCACTGCACTTTCCAGCTCTGTCTCTAAGGATCTAATGCTTGAGAAAAGATCAGGCAAGATTCAGTTTGATGTTTGGCTCAAGGCAAGGATTAGGTTTAAGGTCGGAGCTTTGAAGTCACACCACCGCACTCTAAGGGTTTCGTGTTCCCCAGTGTTGGAGTTATCAAGGCCTAAGAATTTGAAAAGGACGTACTGTTATGCTGATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

199

Amino Acids

22.5

Weight (kDa)

10.2

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 76 - 177 2.4e-14 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22870
fragaria_vesca FvH4_3g30480
malus_domestica MD03G1127800.v1.1 MD11G1149600.v1.1
prunus_persica Prupe.6G114100_v2.0.a1
pyrus_communis pycom11g12260
rosa_chinensis RchiOBHm_Chr5g0056431
rosa_laevigata RLG00000035098
rosa_multiflora Rmu_sc0000317.1_g000045
rosa_roxburghii Rroxscaffold_1G00023880
rosa_rugosa Rorug05G0300000
rosa_samantha Rh5AG370500 Rh5BG381800 Rh5CG404600 Rh5DG394600
rosa_wichuraiana Rw5G034700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 307
AciI CCGC 3 cut(s) 209, 358, 511
AclWI GGATC 3 cut(s) 166, 225, 423
AcsI RAATTY 1 cut(s) 562
AfaI GTAC 1 cut(s) 578
AfiI CCNNNNNNNGG 3 cut(s) 208, 307, 541
AgsI TTSAA 5 cut(s) 87, 184, 326, 499, 568
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 3 cut(s) 83, 402, 494
AluI AGCT 3 cut(s) 83, 402, 494
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 2 cut(s) 259, 412
AlwI GGATC 3 cut(s) 166, 225, 423
AlwNI CAGNNNCTG 1 cut(s) 307
AoxI GGCC 2 cut(s) 134, 554
ApoI RAATTY 1 cut(s) 562
ArsI GACNNNNNNTTYG 2 cut(s) 29, 61
AspLEI GCGC 2 cut(s) 281, 342
AsuC2I CCSGG 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 109
AsuNHI GCTAGC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 114
BccI CCATC 2 cut(s) 158, 164
BceAI ACGGC 2 cut(s) 327, 393
BciT130I CCWGG 1 cut(s) 121
BcnI CCSGG 1 cut(s) 319
BcoDI GTCTC 2 cut(s) 259, 412
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 2 cut(s) 69, 282
BfoI RGCGCY 2 cut(s) 282, 343
Bme1390I CCNGG 2 cut(s) 121, 319
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 2 cut(s) 121, 319
BmrI ACTGGG 1 cut(s) 530
BmtI GCTAGC 1 cut(s) 83
BmuI ACTGGG 1 cut(s) 530
BpuEI CTTGAG 2 cut(s) 446, 449
BpuMI CCSGG 1 cut(s) 319
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 307, 541
Bse1I ACTGG 1 cut(s) 536
Bse3DI GCAATG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 121
BseLI CCNNNNNNNGG 3 cut(s) 208, 307, 541
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 536
BsgI GTGCAG 1 cut(s) 375
BshFI GGCC 2 cut(s) 136, 556
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 318
BslI CCNNNNNNNGG 3 cut(s) 208, 307, 541
BsmAI GTCTC 2 cut(s) 259, 412
BsnI GGCC 2 cut(s) 136, 556
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 4 cut(s) 171, 230, 415, 434
BspACI CCGC 3 cut(s) 209, 358, 511
BspANI GGCC 2 cut(s) 136, 556
BspCNI CTCAG 1 cut(s) 218
BspLI GGNNCC 1 cut(s) 381
BspOI GCTAGC 1 cut(s) 83
BspPI GGATC 3 cut(s) 166, 225, 423
BsrDI GCAATG 1 cut(s) 63
BsrI ACTGG 1 cut(s) 536
BssMI GATC 4 cut(s) 171, 230, 415, 434
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 2 cut(s) 286, 581
BstC8I GCNNGC 2 cut(s) 30, 81
BstDEI CTNAG 4 cut(s) 205, 411, 518, 558
BstH2I RGCGCY 2 cut(s) 282, 343
BstHHI GCGC 2 cut(s) 281, 342
BstKTI GATC 4 cut(s) 174, 233, 418, 437
BstMAI GTCTC 2 cut(s) 259, 412
BstMBI GATC 4 cut(s) 171, 230, 415, 434
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 2 cut(s) 119, 317
BstSFI CTRYAG 2 cut(s) 69, 282
BstX2I RGATCY 2 cut(s) 230, 415
BstYI RGATCY 2 cut(s) 230, 415
BsuRI GGCC 2 cut(s) 136, 556
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 3 cut(s) 291, 387, 543
Cac8I GCNNGC 2 cut(s) 30, 81
CaiI CAGNNNCTG 1 cut(s) 307
CfoI GCGC 2 cut(s) 281, 342
Csp6I GTAC 1 cut(s) 577
CviJI RGCY 8 cut(s) 83, 124, 136, 380, 402, 463, 494, 556
CviKI_1 RGCY 8 cut(s) 83, 124, 136, 380, 402, 463, 494, 556
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 4 cut(s) 205, 411, 518, 558
DpnI GATC 4 cut(s) 173, 232, 417, 436
DpnII GATC 4 cut(s) 171, 230, 415, 434
Eco147I AGGCCT 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 119
FaiI YATR 6 cut(s) 71, 237, 260, 262, 267, 585
FauI CCCGC 1 cut(s) 365
FspBI CTAG 1 cut(s) 80
GlaI GCGC 2 cut(s) 280, 341
HaeII RGCGCY 2 cut(s) 282, 343
HaeIII GGCC 2 cut(s) 136, 556
HapII CCGG 1 cut(s) 318
HhaI GCGC 2 cut(s) 281, 342
Hin6I GCGC 2 cut(s) 279, 340
HinP1I GCGC 2 cut(s) 279, 340
HinfI GANTC 4 cut(s) 252, 269, 304, 445
HpaII CCGG 1 cut(s) 318
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 151, 375
Hpy188I TCNGA 2 cut(s) 230, 491
Hpy8I GTNNAC 2 cut(s) 151, 375
Hpy99I CGWCG 1 cut(s) 348
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 2 cut(s) 286, 581
HpyCH4IV ACGT 1 cut(s) 575
HpyCH4V TGCA 1 cut(s) 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 4 cut(s) 205, 411, 518, 558
HpySE526I ACGT 1 cut(s) 575
HspAI GCGC 2 cut(s) 279, 340
Kzo9I GATC 4 cut(s) 171, 230, 415, 434
LmnI GCTCC 2 cut(s) 385, 491
LpnPI CCDG 8 cut(s) 106, 133, 293, 314, 331, 412, 423, 549
MaeI CTAG 1 cut(s) 80
MaeII ACGT 1 cut(s) 575
MaeIII GTNAC 2 cut(s) 352, 501
MalI GATC 4 cut(s) 173, 232, 417, 436
MboI GATC 4 cut(s) 171, 230, 415, 434
MboII GAAGA 2 cut(s) 3, 173
MfeI CAATTG 1 cut(s) 87
MflI RGATCY 2 cut(s) 230, 415
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 4 cut(s) 54, 87, 289, 562
MlyI GAGTC 3 cut(s) 261, 263, 298
MmeI TCCRAC 2 cut(s) 469, 522
MnlI CCTC 4 cut(s) 34, 126, 212, 394
MseI TTAA 1 cut(s) 483
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 2 cut(s) 121, 319
MunI CAATTG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 38
NciI CCSGG 1 cut(s) 319
NdeII GATC 4 cut(s) 171, 230, 415, 434
NheI GCTAGC 1 cut(s) 79
NlaIV GGNNCC 1 cut(s) 381
NmuCI GTSAC 2 cut(s) 352, 501
PceI AGGCCT 1 cut(s) 556
PfeI GAWTC 1 cut(s) 445
PflMI CCANNNNNTGG 1 cut(s) 307
PfoI TCCNGGA 1 cut(s) 317
PleI GAGTC 3 cut(s) 260, 263, 298
PpsI GAGTC 3 cut(s) 260, 263, 298
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 381
PstNI CAGNNNCTG 1 cut(s) 307
PsuI RGATCY 2 cut(s) 230, 415
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
SaqAI TTAA 1 cut(s) 483
Sau3AI GATC 4 cut(s) 171, 230, 415, 434
SchI GAGTC 3 cut(s) 261, 263, 298
ScrFI CCNGG 2 cut(s) 121, 319
SduI GDGCHC 1 cut(s) 114
SetI ASST 9 cut(s) 85, 122, 189, 204, 404, 482, 489, 496, 578
SfcI CTRYAG 2 cut(s) 69, 282
SmlI CTYRAG 2 cut(s) 425, 464
SmoI CTYRAG 2 cut(s) 425, 464
Sse9I AATT 4 cut(s) 54, 87, 289, 562
SseBI AGGCCT 1 cut(s) 556
SsiI CCGC 3 cut(s) 209, 358, 511
SspMI CTAG 1 cut(s) 80
StuI AGGCCT 1 cut(s) 556
StyD4I CCNGG 2 cut(s) 119, 317
TaaI ACNGT 2 cut(s) 286, 581
TaiI ACGT 1 cut(s) 578
TaqI TCGA 3 cut(s) 159, 170, 346
TasI AATT 4 cut(s) 54, 87, 289, 562
TfiI GAWTC 1 cut(s) 445
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 3 cut(s) 291, 394, 543
TseFI GTSAC 2 cut(s) 352, 501
Tsp45I GTSAC 2 cut(s) 352, 501
TspRI CASTG 3 cut(s) 291, 394, 543
Van91I CCANNNNNTGG 1 cut(s) 307
XapI RAATTY 1 cut(s) 562
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.