Rorug05G0300000

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015299
Physical Location & Seq
Reverse (-)
34875220 .. 34875636
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0300000.1

Sequence Viewer

Length: 324 bp
ATGGTGACCTTGGAAATGCCCTACGGCGAATGCGACAATATTGCCAAAATATACAAGAAGGTAACCTCCGGGGTCAGACCTCAGGCCTTGAACAAGATCAAGGACCCGGAGGTGAGGGCATTTGTCGAGAGGTGCCTTGCACAACCTAGGGCGAGACTCTCTGCAACCAAATTCCTCAAGGACCCGTTCTTTGATGAGGGTATTGACGTGGGATTTATTGATGCTTTTGTATTGGTTACAACAATCGAGTTTGAGGAAGGGAGCGGTTTGGACTTTTACAATGATCGTGTTTTAGTAAGGGAGCGGTTTGGACTTTTACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

107

Amino Acids

12.21

Weight (kDa)

5.17

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22870
fragaria_vesca FvH4_3g30480
malus_domestica MD03G1127800.v1.1 MD11G1149600.v1.1
prunus_persica Prupe.6G114100_v2.0.a1
pyrus_communis pycom11g12260
rosa_chinensis RchiOBHm_Chr5g0056431
rosa_laevigata RLG00000035098
rosa_multiflora Rmu_sc0000317.1_g000045
rosa_roxburghii Rroxscaffold_1G00023880
rosa_rugosa Rorug05G0300000
rosa_samantha Rh5AG370500 Rh5BG381800 Rh5CG404600 Rh5DG394600
rosa_wichuraiana Rw5G034700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 132
AccBSI CCGCTC 2 cut(s) 264, 304
AciI CCGC 2 cut(s) 264, 304
AcsI RAATTY 1 cut(s) 170
AgsI TTSAA 1 cut(s) 91
AjiI CACGTC 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 148
AoxI GGCC 1 cut(s) 84
ApoI RAATTY 1 cut(s) 170
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AspA2I CCTAGG 1 cut(s) 146
AspS9I GGNCC 2 cut(s) 103, 181
AsuC2I CCSGG 2 cut(s) 70, 107
AsuHPI GGTGA 2 cut(s) 16, 124
AvaII GGWCC 2 cut(s) 103, 181
AvrII CCTAGG 1 cut(s) 146
AxyI CCTNAGG 1 cut(s) 81
BanI GGYRCC 1 cut(s) 132
BceAI ACGGC 1 cut(s) 40
BcgI CGANNNNNNTGC 2 cut(s) 23, 57
BcnI CCSGG 2 cut(s) 70, 107
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 1 cut(s) 147
BlnI CCTAGG 1 cut(s) 146
Bme1390I CCNGG 2 cut(s) 70, 107
Bme18I GGWCC 2 cut(s) 103, 181
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 2 cut(s) 103, 181
BmiI GGNNCC 3 cut(s) 105, 134, 183
BmrFI CCNGG 2 cut(s) 70, 107
BmsI GCATC 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 2 cut(s) 70, 107
BsaJI CCNNGG 3 cut(s) 9, 69, 146
Bse21I CCTNAGG 1 cut(s) 81
BseDI CCNNGG 3 cut(s) 9, 69, 146
BseMII CTCAG 1 cut(s) 95
BshFI GGCC 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 132
BsiSI CCGG 2 cut(s) 69, 107
BsmAI GTCTC 1 cut(s) 148
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 96, 283
BspACI CCGC 2 cut(s) 264, 304
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 3 cut(s) 105, 134, 183
BspT107I GGYRCC 1 cut(s) 132
BsrBI CCGCTC 2 cut(s) 264, 304
BssECI CCNNGG 3 cut(s) 9, 69, 146
BssMI GATC 2 cut(s) 96, 283
BssT1I CCWWGG 2 cut(s) 9, 146
BstDEI CTNAG 1 cut(s) 81
BstEII GGTNACC 2 cut(s) 4, 61
BstKTI GATC 2 cut(s) 99, 286
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 2 cut(s) 96, 283
BstPI GGTNACC 2 cut(s) 4, 61
BstSCI CCNGG 2 cut(s) 68, 105
Bsu36I CCTNAGG 1 cut(s) 81
BsuRI GGCC 1 cut(s) 86
BtrI CACGTC 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 103, 181
CviJI RGCY 1 cut(s) 86
CviKI_1 RGCY 1 cut(s) 86
DdeI CTNAG 1 cut(s) 81
DpnI GATC 2 cut(s) 98, 285
DpnII GATC 2 cut(s) 96, 283
Eco130I CCWWGG 2 cut(s) 9, 146
Eco147I AGGCCT 1 cut(s) 86
Eco47I GGWCC 2 cut(s) 103, 181
Eco81I CCTNAGG 1 cut(s) 81
Eco91I GGTNACC 2 cut(s) 4, 61
EcoO109I RGGNCCY 2 cut(s) 103, 181
EcoO65I GGTNACC 2 cut(s) 4, 61
EcoT14I CCWWGG 2 cut(s) 9, 146
ErhI CCWWGG 2 cut(s) 9, 146
FaiI YATR 1 cut(s) 52
FspBI CTAG 1 cut(s) 147
HaeIII GGCC 1 cut(s) 86
HapII CCGG 2 cut(s) 69, 107
HinfI GANTC 1 cut(s) 156
HpaII CCGG 2 cut(s) 69, 107
HphI GGTGA 2 cut(s) 16, 124
Hpy188I TCNGA 1 cut(s) 77
Hpy188III TCNNGA 1 cut(s) 127
HpyAV CCTTC 2 cut(s) 52, 251
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 2 cut(s) 140, 164
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 207
Kzo9I GATC 2 cut(s) 96, 283
LmnI GCTCC 2 cut(s) 261, 301
LpnPI CCDG 3 cut(s) 68, 82, 120
LweI GCATC 1 cut(s) 211
MaeI CTAG 1 cut(s) 147
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 3 cut(s) 4, 61, 235
MalI GATC 2 cut(s) 98, 285
MbiI CCGCTC 2 cut(s) 264, 304
MboI GATC 2 cut(s) 96, 283
MluCI AATT 1 cut(s) 170
MlyI GAGTC 1 cut(s) 150
MnlI CCTC 8 cut(s) 76, 90, 103, 108, 123, 185, 190, 247
MspI CCGG 2 cut(s) 69, 107
MspR9I CCNGG 2 cut(s) 70, 107
Mva1269I GAATGC 1 cut(s) 35
NciI CCSGG 2 cut(s) 70, 107
NdeII GATC 2 cut(s) 96, 283
NlaIV GGNNCC 3 cut(s) 105, 134, 183
NmuCI GTSAC 1 cut(s) 4
PceI AGGCCT 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PctI GAATGC 1 cut(s) 35
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
PpuMI RGGWCCY 2 cut(s) 103, 181
Psp5II RGGWCCY 2 cut(s) 103, 181
PspEI GGTNACC 2 cut(s) 4, 61
PspN4I GGNNCC 3 cut(s) 105, 134, 183
PspPI GGNCC 2 cut(s) 103, 181
PspPPI RGGWCCY 2 cut(s) 103, 181
Sau3AI GATC 2 cut(s) 96, 283
Sau96I GGNCC 2 cut(s) 103, 181
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 2 cut(s) 70, 107
SetI ASST 8 cut(s) 11, 63, 68, 82, 114, 134, 148, 210
SfaNI GCATC 1 cut(s) 211
SinI GGWCC 2 cut(s) 103, 181
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 1 cut(s) 170
SseBI AGGCCT 1 cut(s) 86
SsiI CCGC 2 cut(s) 264, 304
SspI AATATT 1 cut(s) 40
SspMI CTAG 1 cut(s) 147
StuI AGGCCT 1 cut(s) 86
StyD4I CCNGG 2 cut(s) 68, 105
StyI CCWWGG 2 cut(s) 9, 146
TaiI ACGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 126, 246
TasI AATT 1 cut(s) 170
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
VpaK11BI GGWCC 2 cut(s) 103, 181
XapI RAATTY 1 cut(s) 170
XmaJI CCTAGG 1 cut(s) 146
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.