Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015299

Physical Location & Seq

Genomic Coordinates Forward (+)

8233141 .. 8234103

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G114100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCCTACCTCTACATCACTGCCCTCACAAGCACCAAAGTCAAGATCAAATCCAATTAGACTCATTGCCATAGTCTTGCTAGCTTGCATTGTCCTCTTGGGTATTGTGGTGCTCATCACTTGGCTAATTCTCAAGCCCAAGCGCCTTGTTTACACCATTGAGGATGGCTCAATCCAAAACTTCAACCTAACCAATGACCACCTCTCTGCCGACTTTGATTTTGTCTTAAGAGCCTACAATCCCAACAAGAGAGTTTCCTTATACTATGACTCCATTCAAGCCACTGTGAACTACAATGACCAGACACTGGCATTTTCTGGGGTTGATCCCTTCTACCAGCGCCATCGAAACGTGACCCGATTCAACATCAAGTTCACAGCTCATTCCACTGCACTGCCCAGCTCTGTCTCTAACGATCTACAGCTTGAGAAAAGATCAGGCAGGATCCAGTTTGATGTTTGGCTCAAGGCAAGGATTAGGTTTAAGGTTGGAGCTTGGAAATCGCGCCATCGCACATTAAGGGTTTCATGTGCCCCAGTGTTGGAGTTTTCAAGGCCTAAGAACTTGAAGAGGACTTACTGTTATGCAGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

199

Amino Acids

22.75

Weight (kDa)

10.14

Isoelectric Point (pI)

51.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22870
fragaria_vesca	FvH4_3g30480
malus_domestica	MD03G1127800.v1.1 MD11G1149600.v1.1
prunus_persica	Prupe.6G114100_v2.0.a1
pyrus_communis	pycom11g12260
rosa_chinensis	RchiOBHm_Chr5g0056431
rosa_laevigata	RLG00000035098
rosa_multiflora	Rmu_sc0000317.1_g000045
rosa_roxburghii	Rroxscaffold_1G00023880
rosa_rugosa	Rorug05G0300000
rosa_samantha	Rh5AG370500 Rh5BG381800 Rh5CG404600 Rh5DG394600
rosa_wichuraiana	Rw5G034700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	307
AccII	CGCG	1 cut(s)	505
AclWI	GGATC	3 cut(s)	320, 439, 452
AcsI	RAATTY	1 cut(s)	591
AfiI	CCNNNNNNNGG	2 cut(s)	307, 541
AflII	CTTAAG	1 cut(s)	226
AgsI	TTSAA	5 cut(s)	184, 278, 364, 552, 568
AluBI	AGCT	5 cut(s)	83, 380, 402, 424, 494
AluI	AGCT	5 cut(s)	83, 380, 402, 424, 494
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	412
AlwI	GGATC	3 cut(s)	320, 439, 452
AlwNI	CAGNNNCTG	1 cut(s)	307
AoxI	GGCC	1 cut(s)	554
ApoI	RAATTY	1 cut(s)	591
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspLEI	GCGC	3 cut(s)	144, 342, 507
AsuNHI	GCTAGC	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	535
BamHI	GGATCC	1 cut(s)	444
BarI	GAAGNNNNNNTAC	2 cut(s)	560, 592
Bbv12I	GWGCWC	1 cut(s)	114
BccI	CCATC	3 cut(s)	158, 351, 516
BcoDI	GTCTC	1 cut(s)	412
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	419
BfoI	RGCGCY	2 cut(s)	145, 343
BfrI	CTTAAG	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	446
BmrI	ACTGGG	1 cut(s)	530
BmtI	GCTAGC	1 cut(s)	83
BmuI	ACTGGG	1 cut(s)	530
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpuEI	CTTGAG	3 cut(s)	116, 446, 449
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 541
Bse1I	ACTGG	3 cut(s)	312, 448, 536
Bse3DI	GCAATG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	2 cut(s)	307, 541
BseMI	GCAATG	1 cut(s)	63
BseNI	ACTGG	3 cut(s)	312, 448, 536
BseSI	GKGCMC	1 cut(s)	535
BseYI	CCCAGC	1 cut(s)	398
BsgI	GTGCAG	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	505
BshFI	GGCC	1 cut(s)	556
BsiHKAI	GWGCWC	1 cut(s)	114
BslI	CCNNNNNNNGG	2 cut(s)	307, 541
BsmAI	GTCTC	1 cut(s)	412
BsnI	GGCC	1 cut(s)	556
Bsp1286I	GDGCHC	2 cut(s)	114, 535
Bsp143I	GATC	5 cut(s)	44, 325, 415, 434, 444
BspANI	GGCC	1 cut(s)	556
BspFNI	CGCG	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	446
BspOI	GCTAGC	1 cut(s)	83
BspPI	GGATC	3 cut(s)	320, 439, 452
BspTI	CTTAAG	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	3 cut(s)	312, 448, 536
BssMI	GATC	5 cut(s)	44, 325, 415, 434, 444
Bst4CI	ACNGT	2 cut(s)	286, 581
Bst6I	CTCTTC	1 cut(s)	563
BstAFI	CTTAAG	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	81, 85
BstDEI	CTNAG	1 cut(s)	558
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	505
BstH2I	RGCGCY	2 cut(s)	145, 343
BstHHI	GCGC	3 cut(s)	144, 342, 507
BstKTI	GATC	5 cut(s)	47, 328, 418, 437, 447
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	5 cut(s)	44, 325, 415, 434, 444
BstSFI	CTRYAG	1 cut(s)	419
BstSLI	GKGCMC	1 cut(s)	535
BstUI	CGCG	1 cut(s)	505
BstX2I	RGATCY	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	556
BtgZI	GCGATG	1 cut(s)	494
BtsCI	GGATG	1 cut(s)	169
BtsI	GCAGTG	3 cut(s)	17, 387, 392
BtsIMutI	CAGTG	6 cut(s)	17, 282, 305, 387, 392, 543
Cac8I	GCNNGC	2 cut(s)	81, 85
CaiI	CAGNNNCTG	1 cut(s)	307
CfoI	GCGC	3 cut(s)	144, 342, 507
CviAII	CATG	1 cut(s)	528
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	5 cut(s)	46, 327, 417, 436, 446
DpnII	GATC	5 cut(s)	44, 325, 415, 434, 444
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
Eco147I	AGGCCT	1 cut(s)	556
FaeI	CATG	1 cut(s)	531
FaiI	YATR	5 cut(s)	71, 262, 267, 529, 585
FatI	CATG	1 cut(s)	527
FokI	GGATG	1 cut(s)	176
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	3 cut(s)	143, 341, 506
GsaI	CCCAGC	1 cut(s)	402
HaeII	RGCGCY	2 cut(s)	145, 343
HaeIII	GGCC	1 cut(s)	556
HhaI	GCGC	3 cut(s)	144, 342, 507
Hin1II	CATG	1 cut(s)	531
Hin6I	GCGC	3 cut(s)	142, 340, 505
HinP1I	GCGC	3 cut(s)	142, 340, 505
HinfI	GANTC	3 cut(s)	60, 269, 360
Hpy166II	GTNNAC	3 cut(s)	151, 289, 375
Hpy188III	TCNNGA	1 cut(s)	42
Hpy8I	GTNNAC	3 cut(s)	151, 289, 375
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	2 cut(s)	286, 581
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	3 cut(s)	87, 392, 587
HpyF3I	CTNAG	1 cut(s)	558
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	531
HspAI	GCGC	3 cut(s)	142, 340, 505
Kzo9I	GATC	5 cut(s)	44, 325, 415, 434, 444
LmnI	GCTCC	1 cut(s)	491
LpnPI	CCDG	9 cut(s)	293, 303, 314, 350, 412, 423, 427, 461, 549
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	5 cut(s)	46, 327, 417, 436, 446
MboI	GATC	5 cut(s)	44, 325, 415, 434, 444
MboII	GAAGA	1 cut(s)	580
MflI	RGATCY	1 cut(s)	444
MhlI	GDGCHC	2 cut(s)	114, 535
MluCI	AATT	3 cut(s)	54, 126, 591
MlyI	GAGTC	2 cut(s)	54, 263
MmeI	TCCRAC	2 cut(s)	469, 522
MnlI	CCTC	6 cut(s)	19, 34, 104, 154, 212, 564
MseI	TTAA	3 cut(s)	227, 483, 518
MspCI	CTTAAG	1 cut(s)	226
MvnI	CGCG	1 cut(s)	505
NdeII	GATC	5 cut(s)	44, 325, 415, 434, 444
NheI	GCTAGC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	531
NlaIV	GGNNCC	1 cut(s)	446
NmuCI	GTSAC	1 cut(s)	352
PceI	AGGCCT	1 cut(s)	556
PfeI	GAWTC	1 cut(s)	360
PflMI	CCANNNNNTGG	1 cut(s)	307
PleI	GAGTC	2 cut(s)	54, 263
PpsI	GAGTC	2 cut(s)	54, 263
PspFI	CCCAGC	1 cut(s)	398
PspN4I	GGNNCC	1 cut(s)	446
PstNI	CAGNNNCTG	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	444
SaqAI	TTAA	3 cut(s)	227, 483, 518
Sau3AI	GATC	5 cut(s)	44, 325, 415, 434, 444
SchI	GAGTC	2 cut(s)	54, 263
SduI	GDGCHC	2 cut(s)	114, 535
SfcI	CTRYAG	1 cut(s)	419
SmlI	CTYRAG	4 cut(s)	131, 226, 425, 464
SmoI	CTYRAG	4 cut(s)	131, 226, 425, 464
Sse9I	AATT	3 cut(s)	54, 126, 591
SseBI	AGGCCT	1 cut(s)	556
SspMI	CTAG	1 cut(s)	80
StuI	AGGCCT	1 cut(s)	556
TaaI	ACNGT	2 cut(s)	286, 581
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	1 cut(s)	346
TasI	AATT	3 cut(s)	54, 126, 591
TfiI	GAWTC	1 cut(s)	360
Tru1I	TTAA	3 cut(s)	227, 483, 518
Tru9I	TTAA	3 cut(s)	227, 483, 518
TscAI	CASTG	6 cut(s)	24, 289, 312, 394, 399, 543
TseFI	GTSAC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	1 cut(s)	516
TspRI	CASTG	6 cut(s)	24, 289, 312, 394, 399, 543
Van91I	CCANNNNNTGG	1 cut(s)	307
Vha464I	CTTAAG	1 cut(s)	226
XapI	RAATTY	1 cut(s)	591
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.