Rh5BG381800

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015299
Physical Location & Seq
Reverse (-)
60578862 .. 60581928
3067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG381800.1

Sequence Viewer

Length: 594 bp
ATGCCTACTTCTACACCCCAACGTCCCTCACAAAGACCAGCTAGTAACCCGATTCGATTAATTGGTATCATCTTGCTAGCTATAGTTGTTCTTCTGGGTCTTGCTGTGCTCATCACTTGGCTAGTAGTCAAGCCTAAACGCCTTGTTTACACCATCGAAAATAGTTCAGTCAAGGACTACAACTTCACCAATGACCACCTCTCTGGCACTTTTGATTTCACTGTAAGGTCTTACAACCCCAACAAGAGAGTCTCGTTTTACTATGATTCCATCGAGGCTACAGTCAATTACAATGACCAGACATTGGCATTTTCTACTGTCAAGCCATTTTACCAGCGCCATCGAAATGTGACCCGATTCAACGTGGAGTTCGTAGCTAAAAACACTGCACTTCCCAGCTTTGTCGCCAAGGATTTCTTGCTCGAGAAAGCCACGGGTAAGGTTCAACTGGATATTTGGCTTAAGGCAAGAATAAGGTACAAGGTGGGAGCATGGAAGTCGAGGCATAGGACACTGAGGGTTTCGTGTTCGCCGGTGTTCGAGTTCAACAGGTTCAAGAATTTGAAGAGGACTTACTGTTCTACAGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

197

Amino Acids

22.83

Weight (kDa)

10.18

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 74 - 176 1.3e-16 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22870
fragaria_vesca FvH4_3g30480
malus_domestica MD03G1127800.v1.1 MD11G1149600.v1.1
prunus_persica Prupe.6G114100_v2.0.a1
pyrus_communis pycom11g12260
rosa_chinensis RchiOBHm_Chr5g0056431
rosa_laevigata RLG00000035098
rosa_multiflora Rmu_sc0000317.1_g000045
rosa_roxburghii Rroxscaffold_1G00023880
rosa_rugosa Rorug05G0300000
rosa_samantha Rh5AG370500 Rh5BG381800 Rh5CG404600 Rh5DG394600
rosa_wichuraiana Rw5G034700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 304
AcsI RAATTY 1 cut(s) 559
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 1 cut(s) 304
AflII CTTAAG 1 cut(s) 461
AgsI TTSAA 5 cut(s) 361, 446, 547, 556, 565
AloI GAACNNNNNNTCC 2 cut(s) 562, 594
AluBI AGCT 4 cut(s) 41, 80, 377, 399
AluI AGCT 4 cut(s) 41, 80, 377, 399
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 256
Ama87I CYCGRG 1 cut(s) 422
ApoI RAATTY 1 cut(s) 559
AseI ATTAAT 1 cut(s) 59
AspLEI GCGC 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 178
AsuNHI GCTAGC 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 422
BarI GAAGNNNNNNTAC 2 cut(s) 557, 589
Bbv12I GWGCWC 1 cut(s) 111
BccI CCATC 3 cut(s) 161, 278, 348
BcgI CGANNNNNNTGC 2 cut(s) 480, 514
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 3 cut(s) 42, 77, 122
BfmI CTRYAG 3 cut(s) 81, 279, 582
BfoI RGCGCY 1 cut(s) 340
BfrI CTTAAG 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 422
BmtI GCTAGC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 408, 432
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse118I RCCGGY 1 cut(s) 532
Bse1I ACTGG 1 cut(s) 453
BseDI CCNNGG 2 cut(s) 408, 432
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 1 cut(s) 453
BseYI CCCAGC 1 cut(s) 395
BsgI GTGCAG 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 1 cut(s) 533
BslFI GGGAC 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 9
BsoBI CYCGRG 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 507
BspOI GCTAGC 1 cut(s) 80
BspTI CTTAAG 1 cut(s) 461
BsrFI RCCGGY 1 cut(s) 532
BsrI ACTGG 1 cut(s) 453
BssAI RCCGGY 1 cut(s) 532
BssECI CCNNGG 2 cut(s) 408, 432
BssT1I CCWWGG 1 cut(s) 408
Bst4CI ACNGT 4 cut(s) 223, 283, 319, 578
Bst6I CTCTTC 1 cut(s) 560
BstAFI CTTAAG 1 cut(s) 461
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 515
BstDSI CCRYGG 1 cut(s) 432
BstH2I RGCGCY 1 cut(s) 340
BstHHI GCGC 1 cut(s) 339
BstMAI GTCTC 1 cut(s) 256
BstSFI CTRYAG 3 cut(s) 81, 279, 582
BstXI CCANNNNNNTGG 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 432
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 3 cut(s) 219, 384, 512
Cac8I GCNNGC 1 cut(s) 78
CfoI GCGC 1 cut(s) 339
Cfr10I RCCGGY 1 cut(s) 532
Csp6I GTAC 1 cut(s) 478
CviAII CATG 1 cut(s) 492
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 1 cut(s) 515
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
Eco130I CCWWGG 1 cut(s) 408
Eco88I CYCGRG 1 cut(s) 422
EcoT14I CCWWGG 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 1 cut(s) 495
FaiI YATR 4 cut(s) 83, 264, 493, 507
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 1 cut(s) 9
FatI CATG 1 cut(s) 491
FspBI CTAG 3 cut(s) 42, 77, 122
GlaI GCGC 1 cut(s) 338
GsaI CCCAGC 1 cut(s) 399
HaeII RGCGCY 1 cut(s) 340
HapII CCGG 1 cut(s) 533
HhaI GCGC 1 cut(s) 339
Hin1II CATG 1 cut(s) 495
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HinfI GANTC 4 cut(s) 52, 249, 266, 357
HpaII CCGG 1 cut(s) 533
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 148
Hpy188III TCNNGA 2 cut(s) 424, 556
Hpy8I GTNNAC 1 cut(s) 148
HpyCH4III ACNGT 4 cut(s) 223, 283, 319, 578
HpyCH4IV ACGT 2 cut(s) 22, 363
HpyCH4V TGCA 1 cut(s) 389
HpyF3I CTNAG 1 cut(s) 515
HpySE526I ACGT 2 cut(s) 22, 363
Hsp92II CATG 1 cut(s) 495
HspAI GCGC 1 cut(s) 337
LmnI GCTCC 1 cut(s) 488
LpnPI CCDG 9 cut(s) 51, 80, 189, 311, 347, 409, 434, 535, 546
MaeI CTAG 3 cut(s) 42, 77, 122
MaeII ACGT 2 cut(s) 22, 363
MaeIII GTNAC 2 cut(s) 44, 349
MboII GAAGA 2 cut(s) 83, 577
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 3 cut(s) 60, 286, 559
MlyI GAGTC 1 cut(s) 258
MnlI CCTC 6 cut(s) 37, 209, 268, 495, 510, 561
MseI TTAA 2 cut(s) 59, 462
MslI CAYNNNNRTG 1 cut(s) 345
MspCI CTTAAG 1 cut(s) 461
MspI CCGG 1 cut(s) 533
NheI GCTAGC 1 cut(s) 76
NlaIII CATG 1 cut(s) 495
NmuCI GTSAC 1 cut(s) 349
PaeR7I CTCGAG 1 cut(s) 422
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PfeI GAWTC 3 cut(s) 52, 266, 357
PflMI CCANNNNNTGG 1 cut(s) 304
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
PshBI ATTAAT 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 395
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 2 cut(s) 59, 462
SchI GAGTC 1 cut(s) 258
SduI GDGCHC 1 cut(s) 111
SfcI CTRYAG 3 cut(s) 81, 279, 582
Sfr274I CTCGAG 1 cut(s) 422
SgrAI CRCCGGYG 1 cut(s) 532
SlaI CTCGAG 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 2 cut(s) 422, 461
SmoI CTYRAG 2 cut(s) 422, 461
Sse9I AATT 3 cut(s) 60, 286, 559
SspMI CTAG 3 cut(s) 42, 77, 122
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 4 cut(s) 223, 283, 319, 578
TaiI ACGT 2 cut(s) 25, 366
TaqI TCGA 7 cut(s) 55, 156, 273, 343, 423, 500, 540
TasI AATT 3 cut(s) 60, 286, 559
TfiI GAWTC 3 cut(s) 52, 266, 357
Tru1I TTAA 2 cut(s) 59, 462
Tru9I TTAA 2 cut(s) 59, 462
TscAI CASTG 3 cut(s) 226, 391, 519
TseFI GTSAC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 349
TspRI CASTG 3 cut(s) 226, 391, 519
Van91I CCANNNNNTGG 1 cut(s) 304
Vha464I CTTAAG 1 cut(s) 461
VspI ATTAAT 1 cut(s) 59
XapI RAATTY 1 cut(s) 559
XhoI CTCGAG 1 cut(s) 422
XspI CTAG 3 cut(s) 42, 77, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.