Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013574

Physical Location & Seq

Genomic Coordinates Reverse (-)

7736518 .. 7738535

Gene Structure 2018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCTATGGCGGAAATGGCAACGAAGTCTTCACTATCTGCAAAACTCACTCTTCCTTCTTCTTCTACTAAGAAGACACTGAGTCTGAGACAAGTCTCTGTTTCACTTCCAACATCAACTTCAATCTCTCTGTTATCTCTCTTTGCATCTCCTCCTCATGAAGCTAAAGCTGCTGTTTCCATTCCCAAGGACCAAATCGTCTCCTCTCTCACTGAAGTGGAGAAAACAATCAACCAAGTTCAAGAAACTGGTTCTAGTGTATTTGATGCAACGCAGCGTGTGTTCCAAGTAGTAGGAGATGCTCTTAAACCAGCTTTGGACACTGCTTTACCCATTGCAAAGCAAGCTGGTGAAGAAGCTATGAAGCTTGCTTCTCCTGCTTTCTCTGAAGCTTCAAAGAAAGCTCAAGAAGCAATGCAGAGCTCTGGTTTTGATTCTGAGCCTGTCTTTAATGCTGCAAAGACAGTAACAGATGTAGCACAACAGACGTCAAAAGCGATAGAAGATGCTAAACCGATTGCTTCATCGACCATGGATACGATTTCTTCAGCTGACCCTAGTGTCATTGTTGTTGCTGCTGGTGCTGCGTTTCTTGCTTACCTTCTTCTCCCTCCTGTTTTCTCTGCCATCTCTTTTAACTTCCGTGGTTACAAAGGTGATCTTACGCCGGCTCAAACGCTTGACCTTCTTTGCACCAAGAACTACTTGATGGTGGATATAAGATCAGAGAAAGACAAGGAGAAAGCCGGGATTCCACGGCTCCCTTCGAATGCTAAGAACCGCGTGATCTCCATTCCATTAGAAGAACTACCAAACAAAGTAAAAGGAATCGTGAGGAACTCTAAACGAGTTGAAGCAGAGATAGCAGCATTAAAGATTTCTTACCTCAAGAAAATCAACAAAGGCTCCAATATCATCATCTTGGACTCGTACACGGATTCGGCTAAGATAGTGGCGAAAACGTTAAAGGTTCTCGGGTACAAGAATTGCTATATTGTGACAGATGGATTCTCTGGTGGCAGAGGATGGTTGCAGAGCCGTTTAGGCACTGATTCTTACAACTTCTCGTTTGCACAAGTCTTGTCTCCATCGCGGATTATCCCGGCAGCTTCGAGAAGCTTTGGCACTAGGTCCGGAACCAAGTTCCTTCCTAGCTCCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010119 GO:0016020 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051716 GO:0055035 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0090333

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

387

Amino Acids

41.28

Weight (kDa)

9.42

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23060 AT5G23060
fragaria_vesca	FvH4_5g12950
malus_domestica	MD06G1208600.v1.1 MD14G1219000.v1.1
prunus_persica	Prupe.5G213600_v2.0.a1
pyrus_communis	pycom14g18150
rosa_chinensis	RchiOBHm_Chr7g0184231
rosa_laevigata	RLG00000004992
rosa_multiflora	Rmu_sc0012221.1_g000009 Rmu_sc0013812.1_g000003
rosa_roxburghii	Rroxscaffold_3G00269790
rosa_rugosa	Rorug06G0463900
rosa_samantha	Rh7AG081700 Rh7BG065600 Rh7CG065900 Rh7DG065600
rosa_wichuraiana	Rw7G005370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	197, 560
AatII	GACGTC	1 cut(s)	491
AccII	CGCG	2 cut(s)	783, 1093
AccIII	TCCGGA	1 cut(s)	1133
AciI	CCGC	3 cut(s)	11, 781, 1093
AclI	AACGTT	1 cut(s)	962
AcuI	CTGAAG	3 cut(s)	234, 408, 531
AcyI	GRCGYC	1 cut(s)	488
AfaI	GTAC	2 cut(s)	932, 980
AgsI	TTSAA	4 cut(s)	123, 242, 396, 854
AhdI	GACNNNNNGTC	1 cut(s)	81
AjuI	GAANNNNNNNTTGG	2 cut(s)	103, 135
AleI	CACNNNNGTG	1 cut(s)	215
Alw21I	GWGCWC	1 cut(s)	425
Alw26I	GTCTC	4 cut(s)	82, 100, 205, 1089
Ama87I	CYCGRG	1 cut(s)	974
Aor13HI	TCCGGA	1 cut(s)	1133
ApeKI	GCWGC	7 cut(s)	170, 274, 455, 575, 584, 866, 1106
AspS9I	GGNCC	2 cut(s)	190, 1131
AsuC2I	CCSGG	2 cut(s)	748, 1103
AsuHPI	GGTGA	2 cut(s)	362, 668
AsuII	TTCGAA	1 cut(s)	767
AvaI	CYCGRG	1 cut(s)	974
AvaII	GGWCC	2 cut(s)	190, 1131
BanII	GRGCYC	1 cut(s)	425
BbsI	GAAGAC	2 cut(s)	21, 80
Bbv12I	GWGCWC	1 cut(s)	425
BbvI	GCAGC	7 cut(s)	157, 286, 442, 562, 571, 878, 1118
BccI	CCATC	5 cut(s)	635, 703, 998, 1020, 1096
BceAI	ACGGC	2 cut(s)	773, 1023
BciVI	GTATCC	1 cut(s)	529
BcnI	CCSGG	2 cut(s)	748, 1103
BcoDI	GTCTC	4 cut(s)	82, 100, 205, 1089
BfaI	CTAG	4 cut(s)	255, 558, 1128, 1152
BfuI	GTATCC	1 cut(s)	529
BglI	GCCNNNNNGGC	1 cut(s)	1044
BisI	GCNGC	7 cut(s)	171, 275, 456, 576, 585, 867, 1107
BlsI	GCNGC	7 cut(s)	172, 276, 457, 577, 586, 868, 1108
Bme1390I	CCNGG	2 cut(s)	748, 1103
Bme18I	GGWCC	2 cut(s)	190, 1131
BmeRI	GACNNNNNGTC	1 cut(s)	81
BmeT110I	CYCGRG	1 cut(s)	974
BmgT120I	GGNCC	2 cut(s)	190, 1131
BmiI	GGNNCC	3 cut(s)	761, 907, 1138
BmrFI	CCNGG	2 cut(s)	748, 1103
BmsI	GCATC	4 cut(s)	155, 256, 289, 496
BpiI	GAAGAC	2 cut(s)	21, 80
Bpu14I	TTCGAA	1 cut(s)	767
BpuEI	CTTGAG	2 cut(s)	390, 872
BpuMI	CCSGG	2 cut(s)	748, 1103
BsaHI	GRCGYC	1 cut(s)	488
BsaJI	CCNNGG	4 cut(s)	186, 531, 643, 755
BsaWI	WCCGGW	1 cut(s)	1133
BsaXI	ACNNNNNCTCC	2 cut(s)	890, 920
Bse118I	RCCGGY	1 cut(s)	667
Bse1I	ACTGG	1 cut(s)	253
Bse3DI	GCAATG	2 cut(s)	333, 420
BseAI	TCCGGA	1 cut(s)	1133
BseDI	CCNNGG	4 cut(s)	186, 531, 643, 755
BseGI	GGATG	1 cut(s)	1031
BseMI	GCAATG	2 cut(s)	333, 420
BseMII	CTCAG	3 cut(s)	71, 77, 429
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	3 cut(s)	141, 144, 193
BseXI	GCAGC	7 cut(s)	157, 286, 442, 562, 571, 878, 1118
Bsh1236I	CGCG	2 cut(s)	783, 1093
BsiHKAI	GWGCWC	1 cut(s)	425
BsiHKCI	CYCGRG	1 cut(s)	974
BsiSI	CCGG	4 cut(s)	668, 747, 1103, 1134
BsmAI	GTCTC	4 cut(s)	82, 100, 205, 1089
BsmBI	CGTCTC	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	775
BsoBI	CYCGRG	1 cut(s)	974
Bsp119I	TTCGAA	1 cut(s)	767
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp13I	TCCGGA	1 cut(s)	1133
Bsp143I	GATC	3 cut(s)	658, 722, 786
Bsp19I	CCATGG	1 cut(s)	531
BspACI	CCGC	3 cut(s)	11, 781, 1093
BspCNI	CTCAG	3 cut(s)	72, 78, 430
BspEI	TCCGGA	1 cut(s)	1133
BspFNI	CGCG	2 cut(s)	783, 1093
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	3 cut(s)	761, 907, 1138
BspT104I	TTCGAA	1 cut(s)	767
BsrDI	GCAATG	2 cut(s)	333, 420
BsrFI	RCCGGY	1 cut(s)	667
BsrI	ACTGG	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	667
BssECI	CCNNGG	4 cut(s)	186, 531, 643, 755
BssMI	GATC	3 cut(s)	658, 722, 786
BssNI	GRCGYC	1 cut(s)	488
BssT1I	CCWWGG	2 cut(s)	186, 531
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	488
BstBI	TTCGAA	1 cut(s)	767
BstC8I	GCNNGC	3 cut(s)	345, 369, 669
BstDEI	CTNAG	6 cut(s)	69, 80, 86, 438, 774, 945
BstDSI	CCRYGG	3 cut(s)	531, 643, 755
BstF5I	GGATG	1 cut(s)	1031
BstFNI	CGCG	2 cut(s)	783, 1093
BstKTI	GATC	3 cut(s)	661, 725, 789
BstMAI	GTCTC	4 cut(s)	82, 100, 205, 1089
BstMBI	GATC	3 cut(s)	658, 722, 786
BstSCI	CCNGG	2 cut(s)	746, 1101
BstUI	CGCG	2 cut(s)	783, 1093
BstV1I	GCAGC	7 cut(s)	157, 286, 442, 562, 571, 878, 1118
BstV2I	GAAGAC	2 cut(s)	21, 80
BsuI	GTATCC	1 cut(s)	529
BtgI	CCRYGG	3 cut(s)	531, 643, 755
BtgZI	GCGATG	1 cut(s)	1074
BtsCI	GGATG	1 cut(s)	1031
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	4 cut(s)	77, 210, 321, 1047
Cac8I	GCNNGC	3 cut(s)	345, 369, 669
CciI	TCATGA	1 cut(s)	157
Cfr10I	RCCGGY	1 cut(s)	667
Cfr13I	GGNCC	2 cut(s)	190, 1131
Csp6I	GTAC	2 cut(s)	931, 979
CviAII	CATG	2 cut(s)	158, 532
CviQI	GTAC	2 cut(s)	931, 979
DdeI	CTNAG	6 cut(s)	69, 80, 86, 438, 774, 945
DpnI	GATC	3 cut(s)	660, 724, 788
DpnII	GATC	3 cut(s)	658, 722, 786
DrdI	GACNNNNNNGTC	2 cut(s)	197, 560
DriI	GACNNNNNGTC	1 cut(s)	81
DseDI	GACNNNNNNGTC	2 cut(s)	197, 560
Eam1104I	CTCTTC	1 cut(s)	57
Eam1105I	GACNNNNNGTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	423
Eco130I	CCWWGG	2 cut(s)	186, 531
Eco24I	GRGCYC	1 cut(s)	425
Eco47I	GGWCC	2 cut(s)	190, 1131
Eco53kI	GAGCTC	1 cut(s)	423
Eco57I	CTGAAG	3 cut(s)	234, 408, 531
Eco88I	CYCGRG	1 cut(s)	974
EcoICRI	GAGCTC	1 cut(s)	423
EcoT14I	CCWWGG	2 cut(s)	186, 531
EcoT38I	GRGCYC	1 cut(s)	425
ErhI	CCWWGG	2 cut(s)	186, 531
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	2 cut(s)	161, 535
FaiI	YATR	6 cut(s)	8, 159, 362, 533, 719, 993
FalI	AAGNNNNNCTT	4 cut(s)	645, 677, 689, 721
FatI	CATG	2 cut(s)	157, 531
Fnu4HI	GCNGC	7 cut(s)	171, 275, 456, 576, 585, 867, 1107
FokI	GGATG	1 cut(s)	1038
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	7 cut(s)	171, 275, 456, 576, 585, 867, 1107
FspBI	CTAG	4 cut(s)	255, 558, 1128, 1152
GluI	GCNGC	7 cut(s)	171, 275, 456, 576, 585, 867, 1107
HapII	CCGG	4 cut(s)	668, 747, 1103, 1134
Hin1I	GRCGYC	1 cut(s)	488
Hin1II	CATG	2 cut(s)	161, 535
HindIII	AAGCTT	3 cut(s)	365, 390, 1117
HinfI	GANTC	8 cut(s)	82, 434, 751, 828, 926, 938, 1008, 1052
HpaII	CCGG	4 cut(s)	668, 747, 1103, 1134
HphI	GGTGA	2 cut(s)	362, 668
Hpy166II	GTNNAC	1 cut(s)	933
Hpy188I	TCNGA	5 cut(s)	87, 388, 439, 727, 1159
Hpy188III	TCNNGA	7 cut(s)	158, 242, 407, 832, 889, 1113, 1134
Hpy8I	GTNNAC	1 cut(s)	933
HpyAV	CCTTC	5 cut(s)	66, 611, 695, 774, 1157
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	2 cut(s)	488, 962
HpyCH4V	TGCA	9 cut(s)	41, 146, 269, 338, 418, 458, 693, 1033, 1073
HpyF3I	CTNAG	6 cut(s)	69, 80, 86, 438, 774, 945
HpySE526I	ACGT	2 cut(s)	488, 962
Hsp92I	GRCGYC	1 cut(s)	488
Hsp92II	CATG	2 cut(s)	161, 535
Kpn2I	TCCGGA	1 cut(s)	1133
KroI	GCCGGC	1 cut(s)	667
KroNI	GCCGGC	1 cut(s)	669
Kzo9I	GATC	3 cut(s)	658, 722, 786
LmnI	GCTCC	3 cut(s)	765, 911, 1160
Lsp1109I	GCAGC	7 cut(s)	157, 286, 442, 562, 571, 878, 1118
LweI	GCATC	4 cut(s)	155, 256, 289, 496
MaeI	CTAG	4 cut(s)	255, 558, 1128, 1152
MaeII	ACGT	2 cut(s)	488, 962
MaeIII	GTNAC	3 cut(s)	466, 647, 997
MalI	GATC	3 cut(s)	660, 724, 788
MboI	GATC	3 cut(s)	658, 722, 786
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	1 cut(s)	985
MlyI	GAGTC	2 cut(s)	91, 920
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	7 cut(s)	162, 165, 214, 621, 828, 896, 1016
MroI	TCCGGA	1 cut(s)	1133
MroNI	GCCGGC	1 cut(s)	667
MseI	TTAA	5 cut(s)	306, 450, 636, 872, 965
MslI	CAYNNNNRTG	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	551
MspI	CCGG	4 cut(s)	668, 747, 1103, 1134
MspR9I	CCNGG	2 cut(s)	748, 1103
Mva1269I	GAATGC	1 cut(s)	775
MvnI	CGCG	2 cut(s)	783, 1093
NaeI	GCCGGC	1 cut(s)	669
NciI	CCSGG	2 cut(s)	748, 1103
NcoI	CCATGG	1 cut(s)	531
NdeII	GATC	3 cut(s)	658, 722, 786
NgoMIV	GCCGGC	1 cut(s)	667
NlaIII	CATG	2 cut(s)	161, 535
NlaIV	GGNNCC	3 cut(s)	761, 907, 1138
NmuCI	GTSAC	1 cut(s)	997
NspV	TTCGAA	1 cut(s)	767
OliI	CACNNNNGTG	1 cut(s)	215
PagI	TCATGA	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	494
PctI	GAATGC	1 cut(s)	775
PdiI	GCCGGC	1 cut(s)	669
PfeI	GAWTC	6 cut(s)	434, 751, 828, 938, 1008, 1052
PkrI	GCNGC	7 cut(s)	172, 276, 457, 577, 586, 868, 1108
PleI	GAGTC	2 cut(s)	90, 920
PpsI	GAGTC	2 cut(s)	90, 920
Psp124BI	GAGCTC	1 cut(s)	425
Psp1406I	AACGTT	1 cut(s)	962
PspN4I	GGNNCC	3 cut(s)	761, 907, 1138
PspPI	GGNCC	2 cut(s)	190, 1131
PvuII	CAGCTG	1 cut(s)	551
RsaI	GTAC	2 cut(s)	932, 980
RsaNI	GTAC	2 cut(s)	931, 979
RseI	CAYNNNNRTG	1 cut(s)	215
SacI	GAGCTC	1 cut(s)	425
SaqAI	TTAA	5 cut(s)	306, 450, 636, 872, 965
SatI	GCNGC	7 cut(s)	171, 275, 456, 576, 585, 867, 1107
Sau3AI	GATC	3 cut(s)	658, 722, 786
Sau96I	GGNCC	2 cut(s)	190, 1131
SchI	GAGTC	2 cut(s)	91, 920
ScrFI	CCNGG	2 cut(s)	748, 1103
SduI	GDGCHC	1 cut(s)	425
SfaNI	GCATC	4 cut(s)	155, 256, 289, 496
SfuI	TTCGAA	1 cut(s)	767
SinI	GGWCC	2 cut(s)	190, 1131
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	2 cut(s)	405, 887
SmoI	CTYRAG	2 cut(s)	405, 887
Sse9I	AATT	1 cut(s)	985
SsiI	CCGC	3 cut(s)	11, 781, 1093
SspMI	CTAG	4 cut(s)	255, 558, 1128, 1152
SstI	GAGCTC	1 cut(s)	425
StyD4I	CCNGG	2 cut(s)	746, 1101
StyI	CCWWGG	2 cut(s)	186, 531
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	2 cut(s)	491, 965
TaqI	TCGA	3 cut(s)	527, 767, 1112
TasI	AATT	1 cut(s)	985
TfiI	GAWTC	6 cut(s)	434, 751, 828, 938, 1008, 1052
Tru1I	TTAA	5 cut(s)	306, 450, 636, 872, 965
Tru9I	TTAA	5 cut(s)	306, 450, 636, 872, 965
TscAI	CASTG	4 cut(s)	84, 217, 328, 1054
TseFI	GTSAC	1 cut(s)	997
TseI	GCWGC	7 cut(s)	170, 274, 455, 575, 584, 866, 1106
Tsp45I	GTSAC	1 cut(s)	997
TspDTI	ATGAA	3 cut(s)	174, 377, 513
TspGWI	ACGGA	2 cut(s)	632, 950
TspRI	CASTG	4 cut(s)	84, 217, 328, 1054
VpaK11BI	GGWCC	2 cut(s)	190, 1131
XspI	CTAG	4 cut(s)	255, 558, 1128, 1152
ZraI	GACGTC	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.