Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013812.1

Orthogroup ID

OG0013574

Physical Location & Seq

Genomic Coordinates Reverse (-)

21565 .. 23838

Gene Structure 2274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013812.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

atggcagtggagatggctatcagagcttcagtcaccccaagacctcatatttctcttcctcctcctcctcctcctccttcttcttctccttcatcatcatcatcatccacacctaaattttctttcaaaccccaattcagacccatctctgtatcactcccaacatcaactaccctctctctcttggccctcttcaccactccctttgaagccaaggcctttagcctctccaaggatcaaatagtttcttccctcactgaagtggagcagacaattgatcaagttcagcaagtgggttccagtgtttttgataacacacagcgttttcttgaagctttttttaatgcagtgaagcctggcatggatgtggcattgccaattgctaagcaggctggagaacaagcactgaagatagcttctcctgcaatttctgaggtttcaaagaaagcccaagaagcaattcaaagttccgggattgacacagagcctgtttacagagctgcaaagacgataggtgatgcagcaggacagaccaccaaagtaattcaagatgccaagcccattgcttcatcaactgtcgagaccatttcatcagcggatcctgttgtgattgctggaactgctggagtaatattcctcacatacttccttcttcctccaatttggtctgctatctcttttaacctcagaggatacaaaggtgccctcactcctgctcaaacccttgatctcgtttctacgaagaaccaccttctgatcgatattcgaccagagaaggaaaaggacaaggccggcattcctcgtcttccatctagtgccaaaagcaaattgattgctattcccttggaagaactaccaagcaaattgaaaggcctagtcagaaatgtgaagaaagtagaggctgagatagcagctttgaaaattgcttatctcaagagagttaacaaaggcaccaacatcgtcatcttggactcgtactctgattcaggtaaaatagtagcaagagcactaactaatctaggctttaagaacacctggattgtagcagacgggttctccggaaacaaagggtggttacagagtcgtttagggacagattcatacaatttctcctttgctgaggtgatttcaccgtcaagaatcatcccagcagctaccagacgttttggtactacagctcagtctggtcgaaagcttctttcagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010119 GO:0016020 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051716 GO:0055035 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0090333

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

402

Amino Acids

43.02

Weight (kDa)

9.69

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23060 AT5G23060
fragaria_vesca	FvH4_5g12950
malus_domestica	MD06G1208600.v1.1 MD14G1219000.v1.1
prunus_persica	Prupe.5G213600_v2.0.a1
pyrus_communis	pycom14g18150
rosa_chinensis	RchiOBHm_Chr7g0184231
rosa_laevigata	RLG00000004992
rosa_multiflora	Rmu_sc0012221.1_g000009 Rmu_sc0013812.1_g000003
rosa_roxburghii	Rroxscaffold_3G00269790
rosa_rugosa	Rorug06G0463900
rosa_samantha	Rh7AG081700 Rh7BG065600 Rh7CG065900 Rh7DG065600
rosa_wichuraiana	Rw7G005370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	701, 950
AccIII	TCCGGA	1 cut(s)	1058
AciI	CCGC	1 cut(s)	596
AclWI	GGATC	3 cut(s)	243, 593, 606
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	3 cut(s)	12, 279, 428
AfaI	GTAC	2 cut(s)	977, 1171
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	8 cut(s)	127, 209, 332, 441, 464, 548, 868, 919
AjnI	CCWGG	2 cut(s)	355, 1034
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
AleI	CACNNNNGTG	1 cut(s)	260
AluBI	AGCT	8 cut(s)	26, 335, 416, 500, 914, 1154, 1178, 1195
AluI	AGCT	8 cut(s)	26, 335, 416, 500, 914, 1154, 1178, 1195
Alw21I	GWGCWC	1 cut(s)	1009
Alw26I	GTCTC	1 cut(s)	575
AlwI	GGATC	3 cut(s)	243, 593, 606
AlwNI	CAGNNNCTG	1 cut(s)	488
Aor13HI	TCCGGA	1 cut(s)	1058
AoxI	GGCC	4 cut(s)	186, 216, 789, 871
ApeKI	GCWGC	4 cut(s)	500, 521, 911, 1151
ApoI	RAATTY	1 cut(s)	116
Asp700I	GAANNNNTTC	1 cut(s)	459
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	472
AsuHPI	GGTGA	5 cut(s)	25, 187, 527, 1122, 1135
BaeGI	GKGCMC	1 cut(s)	706
BaeI	ACNNNNGTAYC	2 cut(s)	685, 718
BamHI	GGATCC	1 cut(s)	598
BanI	GGYRCC	2 cut(s)	701, 950
BbsI	GAAGAC	1 cut(s)	797
Bbv12I	GWGCWC	1 cut(s)	1009
BbvCI	CCTCAGC	1 cut(s)	1119
BbvI	GCAGC	4 cut(s)	487, 533, 923, 1163
BccI	CCATC	3 cut(s)	7, 152, 817
BcgI	CGANNNNNNTGC	2 cut(s)	940, 974
BciT130I	CCWGG	2 cut(s)	357, 1036
BciVI	GTATCC	1 cut(s)	686
BclI	TGATCA	1 cut(s)	277
BcnI	CCSGG	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	575
BfaI	CTAG	3 cut(s)	813, 875, 1019
BfmI	CTRYAG	1 cut(s)	1173
BfuI	GTATCC	1 cut(s)	686
BisI	GCNGC	4 cut(s)	501, 522, 912, 1152
BlpI	GCTNAGC	1 cut(s)	384
BlsI	GCNGC	4 cut(s)	502, 523, 913, 1153
Bme1390I	CCNGG	3 cut(s)	357, 472, 1036
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	4 cut(s)	298, 600, 703, 952
BmrFI	CCNGG	3 cut(s)	357, 472, 1036
BmsI	GCATC	2 cut(s)	508, 541
BpiI	GAAGAC	1 cut(s)	797
BpmI	CTGGAG	2 cut(s)	414, 645
Bpu10I	CCTNAGC	1 cut(s)	1119
Bpu1102I	GCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	917
BpuMI	CCSGG	1 cut(s)	472
Bsa29I	ATCGAT	1 cut(s)	759
BsaBI	GATNNNNATC	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	575
BsaJI	CCNNGG	3 cut(s)	213, 231, 843
BsaWI	WCCGGW	1 cut(s)	1058
BsaXI	ACNNNNNCTCC	4 cut(s)	1040, 1070, 1094, 1124
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	1 cut(s)	791
Bse1I	ACTGG	1 cut(s)	300
Bse3DI	GCAATG	2 cut(s)	371, 561
Bse8I	GATNNNNATC	1 cut(s)	17
BseAI	TCCGGA	1 cut(s)	1058
BseBI	CCWGG	2 cut(s)	357, 1036
BseCI	ATCGAT	1 cut(s)	759
BseDI	CCNNGG	3 cut(s)	213, 231, 843
BseGI	GGATG	3 cut(s)	104, 370, 1143
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	2 cut(s)	371, 561
BseMII	CTCAG	5 cut(s)	423, 700, 894, 1110, 1193
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	5 cut(s)	51, 54, 57, 60, 63
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	4 cut(s)	487, 533, 923, 1163
BseYI	CCCAGC	1 cut(s)	1147
BshFI	GGCC	4 cut(s)	188, 218, 791, 873
BshNI	GGYRCC	2 cut(s)	701, 950
BshVI	ATCGAT	1 cut(s)	759
BsiHKAI	GWGCWC	1 cut(s)	1009
BsiSI	CCGG	3 cut(s)	471, 792, 1059
BslFI	GGGAC	1 cut(s)	1105
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	575
BsmFI	GGGAC	1 cut(s)	1105
BsmI	GAATGC	1 cut(s)	795
BsnI	GGCC	4 cut(s)	188, 218, 791, 873
Bso31I	GGTCTC	1 cut(s)	575
Bsp1286I	GDGCHC	2 cut(s)	706, 1009
Bsp13I	TCCGGA	1 cut(s)	1058
Bsp143I	GATC	5 cut(s)	235, 277, 598, 727, 756
Bsp1720I	GCTNAGC	1 cut(s)	384
BspACI	CCGC	1 cut(s)	596
BspANI	GGCC	4 cut(s)	188, 218, 791, 873
BspCNI	CTCAG	5 cut(s)	424, 699, 895, 1111, 1192
BspDI	ATCGAT	1 cut(s)	759
BspEI	TCCGGA	1 cut(s)	1058
BspLI	GGNNCC	4 cut(s)	298, 600, 703, 952
BspPI	GGATC	3 cut(s)	243, 593, 606
BspT107I	GGYRCC	2 cut(s)	701, 950
BspTNI	GGTCTC	1 cut(s)	575
BsrDI	GCAATG	2 cut(s)	371, 561
BsrFI	RCCGGY	1 cut(s)	791
BsrI	ACTGG	1 cut(s)	300
BssAI	RCCGGY	1 cut(s)	791
BssECI	CCNNGG	3 cut(s)	213, 231, 843
BssMI	GATC	5 cut(s)	235, 277, 598, 727, 756
BssT1I	CCWWGG	3 cut(s)	213, 231, 843
Bst2UI	CCWGG	2 cut(s)	357, 1036
Bst4CI	ACNGT	2 cut(s)	577, 1134
Bst6I	CTCTTC	2 cut(s)	60, 197
BstC8I	GCNNGC	2 cut(s)	390, 793
BstDEI	CTNAG	6 cut(s)	384, 432, 686, 903, 1119, 1179
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	3 cut(s)	104, 370, 1143
BstKTI	GATC	5 cut(s)	238, 280, 601, 730, 759
BstMAI	GTCTC	1 cut(s)	575
BstMBI	GATC	5 cut(s)	235, 277, 598, 727, 756
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 389, 422, 455, 620, 908
BstNI	CCWGG	2 cut(s)	357, 1036
BstSCI	CCNGG	3 cut(s)	355, 470, 1034
BstSFI	CTRYAG	1 cut(s)	1173
BstSLI	GKGCMC	1 cut(s)	706
BstV1I	GCAGC	4 cut(s)	487, 533, 923, 1163
BstV2I	GAAGAC	1 cut(s)	797
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
Bsu15I	ATCGAT	1 cut(s)	759
BsuI	GTATCC	1 cut(s)	686
BsuRI	GGCC	4 cut(s)	188, 218, 791, 873
BsuTUI	ATCGAT	1 cut(s)	759
BtsCI	GGATG	3 cut(s)	104, 370, 1143
BtsI	GCAGTG	2 cut(s)	12, 354
BtsIMutI	CAGTG	5 cut(s)	12, 255, 307, 354, 404
Cac8I	GCNNGC	2 cut(s)	390, 793
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr10I	RCCGGY	1 cut(s)	791
Cfr13I	GGNCC	1 cut(s)	187
ClaI	ATCGAT	1 cut(s)	759
Csp6I	GTAC	2 cut(s)	976, 1170
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	1 cut(s)	361
CviQI	GTAC	2 cut(s)	976, 1170
DdeI	CTNAG	6 cut(s)	384, 432, 686, 903, 1119, 1179
DpnI	GATC	5 cut(s)	237, 279, 600, 729, 758
DpnII	GATC	5 cut(s)	235, 277, 598, 727, 756
Eam1104I	CTCTTC	2 cut(s)	60, 197
EarI	CTCTTC	2 cut(s)	60, 197
Eco130I	CCWWGG	3 cut(s)	213, 231, 843
Eco147I	AGGCCT	2 cut(s)	218, 873
Eco31I	GGTCTC	1 cut(s)	575
Eco57I	CTGAAG	3 cut(s)	12, 279, 428
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	355, 1034
EcoT14I	CCWWGG	3 cut(s)	213, 231, 843
ErhI	CCWWGG	3 cut(s)	213, 231, 843
FaeI	CATG	1 cut(s)	364
FaiI	YATR	4 cut(s)	48, 362, 643, 1102
FaqI	GGGAC	1 cut(s)	1105
FatI	CATG	1 cut(s)	360
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	501, 522, 912, 1152
FokI	GGATG	3 cut(s)	91, 377, 1130
Fsp4HI	GCNGC	4 cut(s)	501, 522, 912, 1152
FspBI	CTAG	3 cut(s)	813, 875, 1019
GluI	GCNGC	4 cut(s)	501, 522, 912, 1152
GsaI	CCCAGC	1 cut(s)	1151
GsuI	CTGGAG	2 cut(s)	414, 645
HaeIII	GGCC	4 cut(s)	188, 218, 791, 873
HapII	CCGG	3 cut(s)	471, 792, 1059
Hin1II	CATG	1 cut(s)	364
HincII	GTYRAC	1 cut(s)	943
HindII	GTYRAC	1 cut(s)	943
HindIII	AAGCTT	2 cut(s)	333, 1193
HinfI	GANTC	5 cut(s)	971, 983, 1081, 1097, 1140
HpaI	GTTAAC	1 cut(s)	943
HpaII	CCGG	3 cut(s)	471, 792, 1059
HphI	GGTGA	5 cut(s)	25, 187, 527, 1122, 1135
Hpy166II	GTNNAC	2 cut(s)	493, 943
Hpy188I	TCNGA	8 cut(s)	23, 140, 433, 689, 756, 881, 982, 1204
Hpy188III	TCNNGA	6 cut(s)	329, 548, 580, 934, 1059, 1137
Hpy8I	GTNNAC	2 cut(s)	493, 943
HpyAV	CCTTC	5 cut(s)	87, 99, 659, 761, 769
HpyCH4III	ACNGT	2 cut(s)	577, 1134
HpyCH4IV	ACGT	1 cut(s)	1162
HpyCH4V	TGCA	4 cut(s)	347, 425, 503, 521
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 389, 422, 455, 620, 908
HpyF3I	CTNAG	6 cut(s)	384, 432, 686, 903, 1119, 1179
HpySE526I	ACGT	1 cut(s)	1162
Hsp92II	CATG	1 cut(s)	364
Kpn2I	TCCGGA	1 cut(s)	1058
KroI	GCCGGC	1 cut(s)	791
KroNI	GCCGGC	1 cut(s)	793
Ksp22I	TGATCA	1 cut(s)	277
KspAI	GTTAAC	1 cut(s)	943
Kzo9I	GATC	5 cut(s)	235, 277, 598, 727, 756
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	4 cut(s)	487, 533, 923, 1163
LweI	GCATC	2 cut(s)	508, 541
MaeI	CTAG	3 cut(s)	813, 875, 1019
MaeII	ACGT	1 cut(s)	1162
MaeIII	GTNAC	2 cut(s)	31, 1074
MalI	GATC	5 cut(s)	237, 279, 600, 729, 758
MboI	GATC	5 cut(s)	235, 277, 598, 727, 756
MfeI	CAATTG	2 cut(s)	273, 378
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	2 cut(s)	706, 1009
MlyI	GAGTC	2 cut(s)	965, 1090
MroI	TCCGGA	1 cut(s)	1058
MroNI	GCCGGC	1 cut(s)	791
MroXI	GAANNNNTTC	1 cut(s)	459
MseI	TTAA	4 cut(s)	342, 681, 942, 1026
MslI	CAYNNNNRTG	2 cut(s)	260, 365
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	3 cut(s)	471, 792, 1059
MspR9I	CCNGG	3 cut(s)	357, 472, 1036
MunI	CAATTG	2 cut(s)	273, 378
Mva1269I	GAATGC	1 cut(s)	795
MvaI	CCWGG	2 cut(s)	357, 1036
MwoI	GCNNNNNNNGC	6 cut(s)	23, 389, 422, 455, 620, 908
NaeI	GCCGGC	1 cut(s)	793
NciI	CCSGG	1 cut(s)	472
NdeII	GATC	5 cut(s)	235, 277, 598, 727, 756
NgoMIV	GCCGGC	1 cut(s)	791
NlaIII	CATG	1 cut(s)	364
NlaIV	GGNNCC	4 cut(s)	298, 600, 703, 952
NmuCI	GTSAC	1 cut(s)	31
OliI	CACNNNNGTG	1 cut(s)	260
PceI	AGGCCT	2 cut(s)	218, 873
PctI	GAATGC	1 cut(s)	795
PdiI	GCCGGC	1 cut(s)	793
PdmI	GAANNNNTTC	1 cut(s)	459
PfeI	GAWTC	3 cut(s)	983, 1097, 1140
PfoI	TCCNGGA	1 cut(s)	470
PkrI	GCNGC	4 cut(s)	502, 523, 913, 1153
PleI	GAGTC	2 cut(s)	965, 1089
PpsI	GAGTC	2 cut(s)	965, 1089
Psp6I	CCWGG	2 cut(s)	355, 1034
PspFI	CCCAGC	1 cut(s)	1147
PspGI	CCWGG	2 cut(s)	355, 1034
PspN4I	GGNNCC	4 cut(s)	298, 600, 703, 952
PspPI	GGNCC	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	598
RsaI	GTAC	2 cut(s)	977, 1171
RsaNI	GTAC	2 cut(s)	976, 1170
RseI	CAYNNNNRTG	2 cut(s)	260, 365
SaqAI	TTAA	4 cut(s)	342, 681, 942, 1026
SatI	GCNGC	4 cut(s)	501, 522, 912, 1152
Sau3AI	GATC	5 cut(s)	235, 277, 598, 727, 756
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	2 cut(s)	965, 1090
ScrFI	CCNGG	3 cut(s)	357, 472, 1036
SduI	GDGCHC	2 cut(s)	706, 1009
SfaNI	GCATC	2 cut(s)	508, 541
SfcI	CTRYAG	1 cut(s)	1173
SmiMI	CAYNNNNRTG	2 cut(s)	260, 365
SmlI	CTYRAG	1 cut(s)	932
SmoI	CTYRAG	1 cut(s)	932
SseBI	AGGCCT	2 cut(s)	218, 873
SsiI	CCGC	1 cut(s)	596
SspI	AATATT	1 cut(s)	633
SspMI	CTAG	3 cut(s)	813, 875, 1019
StuI	AGGCCT	2 cut(s)	218, 873
StyD4I	CCNGG	3 cut(s)	355, 470, 1034
StyI	CCWWGG	3 cut(s)	213, 231, 843
TaaI	ACNGT	2 cut(s)	577, 1134
TaiI	ACGT	1 cut(s)	1165
TaqI	TCGA	4 cut(s)	579, 759, 766, 1189
TfiI	GAWTC	3 cut(s)	983, 1097, 1140
Tru1I	TTAA	4 cut(s)	342, 681, 942, 1026
Tru9I	TTAA	4 cut(s)	342, 681, 942, 1026
TscAI	CASTG	5 cut(s)	12, 262, 307, 354, 411
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	4 cut(s)	500, 521, 911, 1151
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	4 cut(s)	81, 558, 579, 1089
TspRI	CASTG	5 cut(s)	12, 262, 307, 354, 411
XagI	CCTNNNNNAGG	1 cut(s)	230
XapI	RAATTY	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	459
XspI	CTAG	3 cut(s)	813, 875, 1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.