Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0013574

Physical Location & Seq

Genomic Coordinates Reverse (-)

4748309 .. 4750701

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG065900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGCAGTGGAGATGGCTATCAGAGCTTCAGTCACCCCAAGACCTCATATTTCTCTTCCTCCTCCTCCTTCTTCTCCTTCACCATCATCATCATCATCATCATCATCATCCACACCTAAATTTTCTTTCAAACCCCAATTCAGACCCATCTCTGTATCACTCCCAACATCAACTACCCTCTCTCTCTTGGCCCTCTTCACGACTCCCTTTGAAGCCAAGGCCTTTAGCCTCTCCAAGGATCAAATAGTCTCTTCCCTCACTGAAGTGGAGCAGACAATTGATCAAGTTCAGCAAGTGGGTTCCAGTGTTTTTGATAACACACAGCGTTTTCTTGAAGCTTTTTTAAATGCAGTGAAGCCTGGCATGGATGTCGCATTGCCAATTGCTAAGCAGGCTGGAGAACAAGCACTGAAGATAGCTTCTCCTGCAATTTCTGAGGTTTCAAAGAAAGCCCAAGAAGCAATTCAAAGTTCCGGGATTGACACAGAGCCTGTTTACAGAGCTGCAAAGACGATAGGTGATGCAGCAGGACAGACCACCAAAGTAATTCAAGATGCCAAGCCCATTGCTTCATCAACTGTCGAGACCATTTCATCAGCGGATCCTGTTGTGATTGCTGGAACTGCTGGAGTAATATTCCTCACATACTTCCTTCTTCCTCCAATTTGGTCTGCTATCTCTTTTAACCTCAGAGGATACAAAGGTGCCCTCACTCCTGCTCAAACCCTTGATCTCGTTTCTACGAAGAACCACCTTCTGATCGATATTCGACCAGAGAAGGAAAAGGACAAGGCCGGCATTCCTCGTCTTCCATCTAGTGCCAAAAGCAAATTGATTGCTATTCCCTTGGAAGAACTACCAAGCAAATTGAAAGGCCTAGTCAGAAATGTGAAGAAAGTAGAGGCTGAGATAGCAGCTTTGAAAATTGCTTATCTCAAGAGAGTTAACAAAGGCACCAACATCGTCATCTTGGACTCGTACTCTGATTCAGGTAAAATAGTAGCAAGAGCACTAACTAATCTAGGCTTTAAGAACACCTGGATTGTAGCGGACGGGTTCTCCGGAAACAAAGGGTGGTTACAGAGTCGTTTAGGGACAGATTCATACAATTTCTCCTTTGCTGAGGTGATTTCACCGTCAAGAATCATCCCAGCAGCTACCAGACGTTTTGGTACTACAGCTCAGTCTGGTCGAAAGCTTCTTTCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010119 GO:0016020 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051716 GO:0055035 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0090333

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

403

Amino Acids

43.06

Weight (kDa)

9.69

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23060 AT5G23060
fragaria_vesca	FvH4_5g12950
malus_domestica	MD06G1208600.v1.1 MD14G1219000.v1.1
prunus_persica	Prupe.5G213600_v2.0.a1
pyrus_communis	pycom14g18150
rosa_chinensis	RchiOBHm_Chr7g0184231
rosa_laevigata	RLG00000004992
rosa_multiflora	Rmu_sc0012221.1_g000009 Rmu_sc0013812.1_g000003
rosa_roxburghii	Rroxscaffold_3G00269790
rosa_rugosa	Rorug06G0463900
rosa_samantha	Rh7AG081700 Rh7BG065600 Rh7CG065900 Rh7DG065600
rosa_wichuraiana	Rw7G005370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	704, 953
AccIII	TCCGGA	1 cut(s)	1061
AciI	CCGC	2 cut(s)	599, 1049
AclWI	GGATC	3 cut(s)	246, 596, 609
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	3 cut(s)	12, 282, 431
AfaI	GTAC	2 cut(s)	980, 1174
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	8 cut(s)	130, 212, 335, 444, 467, 551, 871, 922
AjnI	CCWGG	2 cut(s)	358, 1037
AjuI	GAANNNNNNNTTGG	2 cut(s)	447, 479
AleI	CACNNNNGTG	1 cut(s)	263
AluBI	AGCT	8 cut(s)	26, 338, 419, 503, 917, 1157, 1181, 1198
AluI	AGCT	8 cut(s)	26, 338, 419, 503, 917, 1157, 1181, 1198
Alw21I	GWGCWC	1 cut(s)	1012
Alw26I	GTCTC	2 cut(s)	253, 578
AlwI	GGATC	3 cut(s)	246, 596, 609
AlwNI	CAGNNNCTG	1 cut(s)	491
Aor13HI	TCCGGA	1 cut(s)	1061
AoxI	GGCC	4 cut(s)	189, 219, 792, 874
ApeKI	GCWGC	4 cut(s)	503, 524, 914, 1154
ApoI	RAATTY	1 cut(s)	119
Asp700I	GAANNNNTTC	1 cut(s)	462
AspS9I	GGNCC	1 cut(s)	190
AsuC2I	CCSGG	1 cut(s)	475
AsuHPI	GGTGA	5 cut(s)	25, 72, 530, 1125, 1138
BaeGI	GKGCMC	1 cut(s)	709
BaeI	ACNNNNGTAYC	2 cut(s)	688, 721
BamHI	GGATCC	1 cut(s)	601
BanI	GGYRCC	2 cut(s)	704, 953
BbsI	GAAGAC	1 cut(s)	800
Bbv12I	GWGCWC	1 cut(s)	1012
BbvCI	CCTCAGC	1 cut(s)	1122
BbvI	GCAGC	4 cut(s)	490, 536, 926, 1166
BccI	CCATC	4 cut(s)	7, 91, 155, 820
BcgI	CGANNNNNNTGC	4 cut(s)	352, 386, 943, 977
BciT130I	CCWGG	2 cut(s)	360, 1039
BciVI	GTATCC	1 cut(s)	689
BclI	TGATCA	1 cut(s)	280
BcnI	CCSGG	1 cut(s)	475
BcoDI	GTCTC	2 cut(s)	253, 578
BfaI	CTAG	3 cut(s)	816, 878, 1022
BfmI	CTRYAG	1 cut(s)	1176
BfuI	GTATCC	1 cut(s)	689
BisI	GCNGC	4 cut(s)	504, 525, 915, 1155
BlpI	GCTNAGC	1 cut(s)	387
BlsI	GCNGC	4 cut(s)	505, 526, 916, 1156
Bme1390I	CCNGG	3 cut(s)	360, 475, 1039
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	4 cut(s)	301, 603, 706, 955
BmrFI	CCNGG	3 cut(s)	360, 475, 1039
BmsI	GCATC	2 cut(s)	511, 544
BpiI	GAAGAC	1 cut(s)	800
BpmI	CTGGAG	2 cut(s)	417, 648
Bpu10I	CCTNAGC	1 cut(s)	1122
Bpu1102I	GCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	920
BpuMI	CCSGG	1 cut(s)	475
Bsa29I	ATCGAT	1 cut(s)	762
BsaBI	GATNNNNATC	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	578
BsaJI	CCNNGG	3 cut(s)	216, 234, 846
BsaWI	WCCGGW	1 cut(s)	1061
BsaXI	ACNNNNNCTCC	4 cut(s)	1043, 1073, 1097, 1127
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse118I	RCCGGY	1 cut(s)	794
Bse1I	ACTGG	1 cut(s)	303
Bse3DI	GCAATG	2 cut(s)	374, 564
Bse8I	GATNNNNATC	1 cut(s)	17
BseAI	TCCGGA	1 cut(s)	1061
BseBI	CCWGG	2 cut(s)	360, 1039
BseCI	ATCGAT	1 cut(s)	762
BseDI	CCNNGG	3 cut(s)	216, 234, 846
BseGI	GGATG	3 cut(s)	107, 373, 1146
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMI	GCAATG	2 cut(s)	374, 564
BseMII	CTCAG	5 cut(s)	426, 703, 897, 1113, 1196
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	2 cut(s)	51, 54
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	4 cut(s)	490, 536, 926, 1166
BseYI	CCCAGC	1 cut(s)	1150
BshFI	GGCC	4 cut(s)	191, 221, 794, 876
BshNI	GGYRCC	2 cut(s)	704, 953
BshVI	ATCGAT	1 cut(s)	762
BsiHKAI	GWGCWC	1 cut(s)	1012
BsiSI	CCGG	3 cut(s)	474, 795, 1062
BslFI	GGGAC	1 cut(s)	1108
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	2 cut(s)	253, 578
BsmFI	GGGAC	1 cut(s)	1108
BsmI	GAATGC	1 cut(s)	798
BsnI	GGCC	4 cut(s)	191, 221, 794, 876
Bso31I	GGTCTC	1 cut(s)	578
Bsp1286I	GDGCHC	2 cut(s)	709, 1012
Bsp13I	TCCGGA	1 cut(s)	1061
Bsp143I	GATC	5 cut(s)	238, 280, 601, 730, 759
Bsp1720I	GCTNAGC	1 cut(s)	387
BspACI	CCGC	2 cut(s)	599, 1049
BspANI	GGCC	4 cut(s)	191, 221, 794, 876
BspCNI	CTCAG	5 cut(s)	427, 702, 898, 1114, 1195
BspDI	ATCGAT	1 cut(s)	762
BspEI	TCCGGA	1 cut(s)	1061
BspLI	GGNNCC	4 cut(s)	301, 603, 706, 955
BspPI	GGATC	3 cut(s)	246, 596, 609
BspT107I	GGYRCC	2 cut(s)	704, 953
BspTNI	GGTCTC	1 cut(s)	578
BsrDI	GCAATG	2 cut(s)	374, 564
BsrFI	RCCGGY	1 cut(s)	794
BsrI	ACTGG	1 cut(s)	303
BssAI	RCCGGY	1 cut(s)	794
BssECI	CCNNGG	3 cut(s)	216, 234, 846
BssMI	GATC	5 cut(s)	238, 280, 601, 730, 759
BssT1I	CCWWGG	3 cut(s)	216, 234, 846
Bst2UI	CCWGG	2 cut(s)	360, 1039
Bst4CI	ACNGT	2 cut(s)	580, 1137
Bst6I	CTCTTC	3 cut(s)	60, 200, 256
BstC8I	GCNNGC	2 cut(s)	393, 796
BstDEI	CTNAG	6 cut(s)	387, 435, 689, 906, 1122, 1182
BstENI	CCTNNNNNAGG	1 cut(s)	233
BstF5I	GGATG	3 cut(s)	107, 373, 1146
BstKTI	GATC	5 cut(s)	241, 283, 604, 733, 762
BstMAI	GTCTC	2 cut(s)	253, 578
BstMBI	GATC	5 cut(s)	238, 280, 601, 730, 759
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 392, 425, 458, 623, 911
BstNI	CCWGG	2 cut(s)	360, 1039
BstSCI	CCNGG	3 cut(s)	358, 473, 1037
BstSFI	CTRYAG	1 cut(s)	1176
BstSLI	GKGCMC	1 cut(s)	709
BstV1I	GCAGC	4 cut(s)	490, 536, 926, 1166
BstV2I	GAAGAC	1 cut(s)	800
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
Bsu15I	ATCGAT	1 cut(s)	762
BsuI	GTATCC	1 cut(s)	689
BsuRI	GGCC	4 cut(s)	191, 221, 794, 876
BsuTUI	ATCGAT	1 cut(s)	762
BtsCI	GGATG	3 cut(s)	107, 373, 1146
BtsI	GCAGTG	2 cut(s)	12, 357
BtsIMutI	CAGTG	5 cut(s)	12, 258, 310, 357, 407
Cac8I	GCNNGC	2 cut(s)	393, 796
CaiI	CAGNNNCTG	1 cut(s)	491
Cfr10I	RCCGGY	1 cut(s)	794
Cfr13I	GGNCC	1 cut(s)	190
ClaI	ATCGAT	1 cut(s)	762
Csp6I	GTAC	2 cut(s)	979, 1173
CviAII	CATG	1 cut(s)	364
CviQI	GTAC	2 cut(s)	979, 1173
DdeI	CTNAG	6 cut(s)	387, 435, 689, 906, 1122, 1182
DpnI	GATC	5 cut(s)	240, 282, 603, 732, 761
DpnII	GATC	5 cut(s)	238, 280, 601, 730, 759
DraI	TTTAAA	1 cut(s)	345
Eam1104I	CTCTTC	3 cut(s)	60, 200, 256
EarI	CTCTTC	3 cut(s)	60, 200, 256
Eco130I	CCWWGG	3 cut(s)	216, 234, 846
Eco147I	AGGCCT	2 cut(s)	221, 876
Eco31I	GGTCTC	1 cut(s)	578
Eco57I	CTGAAG	3 cut(s)	12, 282, 431
EcoNI	CCTNNNNNAGG	1 cut(s)	233
EcoRII	CCWGG	2 cut(s)	358, 1037
EcoT14I	CCWWGG	3 cut(s)	216, 234, 846
ErhI	CCWWGG	3 cut(s)	216, 234, 846
FaeI	CATG	1 cut(s)	367
FaiI	YATR	4 cut(s)	48, 365, 646, 1105
FaqI	GGGAC	1 cut(s)	1108
FatI	CATG	1 cut(s)	363
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	4 cut(s)	504, 525, 915, 1155
FokI	GGATG	3 cut(s)	94, 380, 1133
Fsp4HI	GCNGC	4 cut(s)	504, 525, 915, 1155
FspBI	CTAG	3 cut(s)	816, 878, 1022
GluI	GCNGC	4 cut(s)	504, 525, 915, 1155
GsaI	CCCAGC	1 cut(s)	1154
GsuI	CTGGAG	2 cut(s)	417, 648
HaeIII	GGCC	4 cut(s)	191, 221, 794, 876
HapII	CCGG	3 cut(s)	474, 795, 1062
Hin1II	CATG	1 cut(s)	367
HincII	GTYRAC	1 cut(s)	946
HindII	GTYRAC	1 cut(s)	946
HindIII	AAGCTT	2 cut(s)	336, 1196
HinfI	GANTC	6 cut(s)	202, 974, 986, 1084, 1100, 1143
HpaI	GTTAAC	1 cut(s)	946
HpaII	CCGG	3 cut(s)	474, 795, 1062
HphI	GGTGA	5 cut(s)	25, 72, 530, 1125, 1138
Hpy166II	GTNNAC	2 cut(s)	496, 946
Hpy188I	TCNGA	8 cut(s)	23, 143, 436, 692, 759, 884, 985, 1207
Hpy188III	TCNNGA	7 cut(s)	199, 332, 551, 583, 937, 1062, 1140
Hpy8I	GTNNAC	2 cut(s)	496, 946
HpyAV	CCTTC	5 cut(s)	78, 87, 662, 764, 772
HpyCH4III	ACNGT	2 cut(s)	580, 1137
HpyCH4IV	ACGT	1 cut(s)	1165
HpyCH4V	TGCA	4 cut(s)	350, 428, 506, 524
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 392, 425, 458, 623, 911
HpyF3I	CTNAG	6 cut(s)	387, 435, 689, 906, 1122, 1182
HpySE526I	ACGT	1 cut(s)	1165
Hsp92II	CATG	1 cut(s)	367
Kpn2I	TCCGGA	1 cut(s)	1061
KroI	GCCGGC	1 cut(s)	794
KroNI	GCCGGC	1 cut(s)	796
Ksp22I	TGATCA	1 cut(s)	280
KspAI	GTTAAC	1 cut(s)	946
Kzo9I	GATC	5 cut(s)	238, 280, 601, 730, 759
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	4 cut(s)	490, 536, 926, 1166
LweI	GCATC	2 cut(s)	511, 544
MaeI	CTAG	3 cut(s)	816, 878, 1022
MaeII	ACGT	1 cut(s)	1165
MaeIII	GTNAC	2 cut(s)	31, 1077
MalI	GATC	5 cut(s)	240, 282, 603, 732, 761
MboI	GATC	5 cut(s)	238, 280, 601, 730, 759
MfeI	CAATTG	2 cut(s)	276, 381
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	2 cut(s)	709, 1012
MlyI	GAGTC	3 cut(s)	196, 968, 1093
MroI	TCCGGA	1 cut(s)	1061
MroNI	GCCGGC	1 cut(s)	794
MroXI	GAANNNNTTC	1 cut(s)	462
MseI	TTAA	4 cut(s)	344, 684, 945, 1029
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	599
MspI	CCGG	3 cut(s)	474, 795, 1062
MspR9I	CCNGG	3 cut(s)	360, 475, 1039
MunI	CAATTG	2 cut(s)	276, 381
Mva1269I	GAATGC	1 cut(s)	798
MvaI	CCWGG	2 cut(s)	360, 1039
MwoI	GCNNNNNNNGC	6 cut(s)	23, 392, 425, 458, 623, 911
NaeI	GCCGGC	1 cut(s)	796
NciI	CCSGG	1 cut(s)	475
NdeII	GATC	5 cut(s)	238, 280, 601, 730, 759
NgoMIV	GCCGGC	1 cut(s)	794
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	4 cut(s)	301, 603, 706, 955
NmuCI	GTSAC	1 cut(s)	31
OliI	CACNNNNGTG	1 cut(s)	263
PceI	AGGCCT	2 cut(s)	221, 876
PctI	GAATGC	1 cut(s)	798
PdiI	GCCGGC	1 cut(s)	796
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	3 cut(s)	986, 1100, 1143
PfoI	TCCNGGA	1 cut(s)	473
PkrI	GCNGC	4 cut(s)	505, 526, 916, 1156
PleI	GAGTC	3 cut(s)	196, 968, 1092
PpsI	GAGTC	3 cut(s)	196, 968, 1092
Psp6I	CCWGG	2 cut(s)	358, 1037
PspFI	CCCAGC	1 cut(s)	1150
PspGI	CCWGG	2 cut(s)	358, 1037
PspN4I	GGNNCC	4 cut(s)	301, 603, 706, 955
PspPI	GGNCC	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	601
RsaI	GTAC	2 cut(s)	980, 1174
RsaNI	GTAC	2 cut(s)	979, 1173
RseI	CAYNNNNRTG	1 cut(s)	263
SaqAI	TTAA	4 cut(s)	344, 684, 945, 1029
SatI	GCNGC	4 cut(s)	504, 525, 915, 1155
Sau3AI	GATC	5 cut(s)	238, 280, 601, 730, 759
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	3 cut(s)	196, 968, 1093
ScrFI	CCNGG	3 cut(s)	360, 475, 1039
SduI	GDGCHC	2 cut(s)	709, 1012
SfaNI	GCATC	2 cut(s)	511, 544
SfcI	CTRYAG	1 cut(s)	1176
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	935
SmoI	CTYRAG	1 cut(s)	935
SseBI	AGGCCT	2 cut(s)	221, 876
SsiI	CCGC	2 cut(s)	599, 1049
SspI	AATATT	1 cut(s)	636
SspMI	CTAG	3 cut(s)	816, 878, 1022
StuI	AGGCCT	2 cut(s)	221, 876
StyD4I	CCNGG	3 cut(s)	358, 473, 1037
StyI	CCWWGG	3 cut(s)	216, 234, 846
TaaI	ACNGT	2 cut(s)	580, 1137
TaiI	ACGT	1 cut(s)	1168
TaqI	TCGA	4 cut(s)	582, 762, 769, 1192
TfiI	GAWTC	3 cut(s)	986, 1100, 1143
Tru1I	TTAA	4 cut(s)	344, 684, 945, 1029
Tru9I	TTAA	4 cut(s)	344, 684, 945, 1029
TscAI	CASTG	5 cut(s)	12, 265, 310, 357, 414
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	4 cut(s)	503, 524, 914, 1154
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	561, 582, 1092
TspRI	CASTG	5 cut(s)	12, 265, 310, 357, 414
XagI	CCTNNNNNAGG	1 cut(s)	233
XapI	RAATTY	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	3 cut(s)	816, 878, 1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.