Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0013574

Physical Location & Seq

Genomic Coordinates Reverse (-)

34233385 .. 34235830

Gene Structure 2446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1208600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCGGTGGAGATGGCCATCAGAGCTTCCGCCACCCCAAGACCCTCCCTGCCTCCACCCAAACTTTCTCTCAAGCCACCCAAATTTAGACCCACCTCTGTTTCCCTACCAACATCAACCACAATCTCCCTTTTAGGCCTTTTCACCTCCCCCATTGAAGCCAAAGCTTTCAGCCTCTCCAAGGACCAGATTGTCTCATCACTCACTGAAGAAAGAACTATGCAGCAAGTGGGTTCGACAGTTTTCGACGGCACGGCGCATGTTCTGGAATCTGTTCTGAATGCAGTGAAGCCCGGCATTGATGCGGCGTTGCCGATTGGGAAACAGGCCGGAGAGCAGGCGCTGAAGATTGCTTCTCCGGCAAGATTGCCCAAGAAGCAATCCATGGCTCTGGGGTTGACATACAGACTGTACTCAACGGTAGCTGATGCAGCAGGGCAGACCACCGAAGCAGTTGAAGAGGCCAAGCCCCTTGCATCATCAACTATCCAGACCATCTCATCTGCAGATCCTATTGTCATTGCGGGAACTGCTGGAGCTTTATTCCTCGCATACCTCCTTCTTCCTCCCATCTGGTCTGCCCTCTCTTTTAGCCTCCGTGTTCGCTTACTCCTGCTTATATCAACAAAGAATTACCTTCTGATAGATATTCGACCAGAGAAGGACAAGGACAAGGCTGGCATTCCCCGCCTACCATCGAGTGCTGAAAGCAAAATGATTGCCATTCCTTTGGAAGAACTACCGAACAAATTGAGAGGCCTTGTCAGAAACGCGAAGAAAGTAGAGGCAGAGATAGCAGCTCTCAAGATTTCTTACCTCAAGAGAGTTAACAAAGGCTCCAGCATCTCGGATTCAGGAAAAATAGTTGCAAGAGCACTAACCCGTCTAGGCTTTAAGAACTGTTGGACAGTAGCAGATGGGTCCTCAGGAAGCAAGGGATGGTTACAGAGCCGTTTAGACACAGATTCGTACAATTCATCTTTCGCCGAGGTCATTTCGCCGTCAAGAGTCGTCCCAGCAGCGGTGAGACGTTTTGGCACAACCAGCACATCCGCAGAGTCTGGTCGAAAGCTTCTTCCTGGATCCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010119 GO:0016020 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051716 GO:0055035 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0090333

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

364

Amino Acids

38.61

Weight (kDa)

9.89

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23060 AT5G23060
fragaria_vesca	FvH4_5g12950
malus_domestica	MD06G1208600.v1.1 MD14G1219000.v1.1
prunus_persica	Prupe.5G213600_v2.0.a1
pyrus_communis	pycom14g18150
rosa_chinensis	RchiOBHm_Chr7g0184231
rosa_laevigata	RLG00000004992
rosa_multiflora	Rmu_sc0012221.1_g000009 Rmu_sc0013812.1_g000003
rosa_roxburghii	Rroxscaffold_3G00269790
rosa_rugosa	Rorug06G0463900
rosa_samantha	Rh7AG081700 Rh7BG065600 Rh7CG065900 Rh7DG065600
rosa_wichuraiana	Rw7G005370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	191
AccII	CGCG	1 cut(s)	773
AciI	CCGC	7 cut(s)	5, 30, 305, 524, 688, 1022, 1053
AclWI	GGATC	3 cut(s)	503, 1077, 1090
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	83
AcuI	CTGAAG	2 cut(s)	228, 365
AfaI	GTAC	2 cut(s)	413, 971
AfiI	CCNNNNNNNGG	2 cut(s)	181, 1021
AgsI	TTSAA	2 cut(s)	158, 458
AjnI	CCWGG	1 cut(s)	1078
AluBI	AGCT	6 cut(s)	26, 167, 425, 539, 800, 1072
AluI	AGCT	6 cut(s)	26, 167, 425, 539, 800, 1072
Alw21I	GWGCWC	1 cut(s)	877
Alw26I	GTCTC	2 cut(s)	199, 1021
AlwI	GGATC	3 cut(s)	503, 1077, 1090
AlwNI	CAGNNNCTG	2 cut(s)	343, 1061
AoxI	GGCC	5 cut(s)	15, 136, 327, 462, 757
ApeKI	GCWGC	4 cut(s)	223, 431, 797, 1019
ApoI	RAATTY	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	273
AspLEI	GCGC	2 cut(s)	259, 343
AspS9I	GGNCC	2 cut(s)	184, 921
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	2 cut(s)	136, 1036
AvaII	GGWCC	2 cut(s)	184, 921
AxyI	CCTNAGG	1 cut(s)	925
BalI	TGGCCA	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	1082
Bbv12I	GWGCWC	1 cut(s)	877
BbvI	GCAGC	4 cut(s)	235, 443, 809, 1031
BccI	CCATC	7 cut(s)	7, 26, 503, 578, 703, 911, 933
BceAI	ACGGC	4 cut(s)	265, 270, 936, 985
BciT130I	CCWGG	1 cut(s)	1080
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	199, 1021
BfaI	CTAG	1 cut(s)	887
BfmI	CTRYAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	344
BisI	GCNGC	5 cut(s)	224, 306, 432, 798, 1020
BlsI	GCNGC	5 cut(s)	225, 307, 433, 799, 1021
Bme1390I	CCNGG	2 cut(s)	294, 1080
Bme18I	GGWCC	2 cut(s)	184, 921
BmgT120I	GGNCC	2 cut(s)	184, 921
BmiI	GGNNCC	3 cut(s)	838, 922, 1084
BmrFI	CCNGG	2 cut(s)	294, 1080
BmsI	GCATC	4 cut(s)	292, 418, 485, 852
BpmI	CTGGAG	2 cut(s)	555, 823
BpuEI	CTTGAG	3 cut(s)	56, 788, 803
BpuMI	CCSGG	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	180, 384, 987
BsaXI	ACNNNNNCTCC	2 cut(s)	821, 851
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 1021
Bse21I	CCTNAGG	1 cut(s)	925
Bse3DI	GCAATG	1 cut(s)	519
Bse8I	GATNNNNATC	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	1080
BseDI	CCNNGG	3 cut(s)	180, 384, 987
BseGI	GGATG	2 cut(s)	944, 1049
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	2 cut(s)	181, 1021
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	1 cut(s)	939
BseXI	GCAGC	4 cut(s)	235, 443, 809, 1031
BseYI	CCCAGC	1 cut(s)	1015
Bsh1236I	CGCG	1 cut(s)	773
BshFI	GGCC	5 cut(s)	17, 138, 329, 464, 759
BsiHKAI	GWGCWC	1 cut(s)	877
BsiSI	CCGG	3 cut(s)	294, 330, 359
BslFI	GGGAC	1 cut(s)	998
BslI	CCNNNNNNNGG	2 cut(s)	181, 1021
BsmAI	GTCTC	2 cut(s)	199, 1021
BsmBI	CGTCTC	1 cut(s)	1021
BsmFI	GGGAC	1 cut(s)	998
BsmI	GAATGC	2 cut(s)	286, 681
BsnI	GGCC	5 cut(s)	17, 138, 329, 464, 759
Bsp1286I	GDGCHC	1 cut(s)	877
Bsp143I	GATC	2 cut(s)	508, 1082
Bsp19I	CCATGG	1 cut(s)	384
BspACI	CCGC	7 cut(s)	5, 30, 305, 524, 688, 1022, 1053
BspANI	GGCC	5 cut(s)	17, 138, 329, 464, 759
BspCNI	CTCAG	1 cut(s)	938
BspFNI	CGCG	1 cut(s)	773
BspLI	GGNNCC	3 cut(s)	838, 922, 1084
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	3 cut(s)	503, 1077, 1090
BsrDI	GCAATG	1 cut(s)	519
BssECI	CCNNGG	3 cut(s)	180, 384, 987
BssMI	GATC	2 cut(s)	508, 1082
BssT1I	CCWWGG	2 cut(s)	180, 384
Bst2UI	CCWGG	1 cut(s)	1080
Bst4CI	ACNGT	5 cut(s)	241, 411, 421, 902, 910
Bst6I	CTCTTC	1 cut(s)	453
BstC8I	GCNNGC	2 cut(s)	339, 679
BstDEI	CTNAG	1 cut(s)	925
BstDSI	CCRYGG	1 cut(s)	384
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstF5I	GGATG	2 cut(s)	944, 1049
BstFNI	CGCG	1 cut(s)	773
BstH2I	RGCGCY	1 cut(s)	344
BstHHI	GCGC	2 cut(s)	259, 343
BstKTI	GATC	2 cut(s)	511, 1085
BstMAI	GTCTC	2 cut(s)	199, 1021
BstMBI	GATC	2 cut(s)	508, 1082
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 359, 376, 431, 530, 687, 794, 1044
BstNI	CCWGG	1 cut(s)	1080
BstNSI	RCATGY	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	292, 1078
BstSFI	CTRYAG	1 cut(s)	504
BstUI	CGCG	1 cut(s)	773
BstV1I	GCAGC	4 cut(s)	235, 443, 809, 1031
BstX2I	RGATCY	2 cut(s)	508, 1082
BstXI	CCANNNNNNTGG	2 cut(s)	391, 730
BstYI	RGATCY	2 cut(s)	508, 1082
Bsu36I	CCTNAGG	1 cut(s)	925
BsuRI	GGCC	5 cut(s)	17, 138, 329, 464, 759
BtgI	CCRYGG	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	944, 1049
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	204, 291
Cac8I	GCNNGC	2 cut(s)	339, 679
CaiI	CAGNNNCTG	2 cut(s)	343, 1061
CfoI	GCGC	2 cut(s)	259, 343
Cfr13I	GGNCC	2 cut(s)	184, 921
Csp6I	GTAC	2 cut(s)	412, 970
CviAII	CATG	2 cut(s)	260, 385
CviQI	GTAC	2 cut(s)	412, 970
DdeI	CTNAG	1 cut(s)	925
DpnI	GATC	2 cut(s)	510, 1084
DpnII	GATC	2 cut(s)	508, 1082
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
EciI	GGCGGA	1 cut(s)	19
Eco130I	CCWWGG	2 cut(s)	180, 384
Eco147I	AGGCCT	2 cut(s)	138, 759
Eco47I	GGWCC	2 cut(s)	184, 921
Eco57I	CTGAAG	2 cut(s)	228, 365
Eco81I	CCTNAGG	1 cut(s)	925
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	921
EcoRII	CCWGG	1 cut(s)	1078
EcoT14I	CCWWGG	2 cut(s)	180, 384
ErhI	CCWWGG	2 cut(s)	180, 384
Esp3I	CGTCTC	1 cut(s)	1021
FaeI	CATG	2 cut(s)	263, 388
FaiI	YATR	6 cut(s)	221, 261, 386, 403, 553, 620
FaqI	GGGAC	1 cut(s)	998
FatI	CATG	2 cut(s)	259, 384
FauI	CCCGC	2 cut(s)	517, 695
Fnu4HI	GCNGC	5 cut(s)	224, 306, 432, 798, 1020
FokI	GGATG	2 cut(s)	951, 1036
Fsp4HI	GCNGC	5 cut(s)	224, 306, 432, 798, 1020
FspBI	CTAG	1 cut(s)	887
GlaI	GCGC	2 cut(s)	258, 342
GluI	GCNGC	5 cut(s)	224, 306, 432, 798, 1020
GsaI	CCCAGC	1 cut(s)	1019
GsuI	CTGGAG	2 cut(s)	555, 823
HaeII	RGCGCY	1 cut(s)	344
HaeIII	GGCC	5 cut(s)	17, 138, 329, 464, 759
HapII	CCGG	3 cut(s)	294, 330, 359
HhaI	GCGC	2 cut(s)	259, 343
Hin1II	CATG	2 cut(s)	263, 388
Hin6I	GCGC	2 cut(s)	257, 341
HinP1I	GCGC	2 cut(s)	257, 341
HincII	GTYRAC	2 cut(s)	399, 829
HindII	GTYRAC	2 cut(s)	399, 829
HindIII	AAGCTT	2 cut(s)	165, 1070
HinfI	GANTC	5 cut(s)	269, 851, 965, 1008, 1058
HpaI	GTTAAC	1 cut(s)	829
HpaII	CCGG	3 cut(s)	294, 330, 359
HphI	GGTGA	2 cut(s)	136, 1036
Hpy166II	GTNNAC	2 cut(s)	399, 829
Hpy188I	TCNGA	6 cut(s)	23, 279, 642, 767, 850, 1087
Hpy188III	TCNNGA	7 cut(s)	266, 490, 805, 820, 855, 927, 1005
Hpy8I	GTNNAC	2 cut(s)	399, 829
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	3 cut(s)	569, 647, 655
HpyCH4III	ACNGT	5 cut(s)	241, 411, 421, 902, 910
HpyCH4IV	ACGT	1 cut(s)	1030
HpyCH4V	TGCA	6 cut(s)	223, 284, 431, 476, 506, 869
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 359, 376, 431, 530, 687, 794, 1044
HpyF3I	CTNAG	1 cut(s)	925
HpySE526I	ACGT	1 cut(s)	1030
Hsp92II	CATG	2 cut(s)	263, 388
HspAI	GCGC	2 cut(s)	257, 341
KspAI	GTTAAC	1 cut(s)	829
Kzo9I	GATC	2 cut(s)	508, 1082
LmnI	GCTCC	2 cut(s)	536, 842
Lsp1109I	GCAGC	4 cut(s)	235, 443, 809, 1031
LweI	GCATC	4 cut(s)	292, 418, 485, 852
MaeI	CTAG	1 cut(s)	887
MaeII	ACGT	1 cut(s)	1030
MaeIII	GTNAC	1 cut(s)	942
MalI	GATC	2 cut(s)	510, 1084
MboI	GATC	2 cut(s)	508, 1082
MboII	GAAGA	7 cut(s)	221, 358, 470, 554, 746, 787, 1067
MflI	RGATCY	2 cut(s)	508, 1082
MhlI	GDGCHC	1 cut(s)	877
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	4 cut(s)	83, 631, 749, 973
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	2 cut(s)	1017, 1067
MmeI	TCCRAC	1 cut(s)	884
Mox20I	TGGCCA	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	273
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	2 cut(s)	828, 894
Msp20I	TGGCCA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	1022
MspI	CCGG	3 cut(s)	294, 330, 359
MspR9I	CCNGG	2 cut(s)	294, 1080
Mva1269I	GAATGC	2 cut(s)	286, 681
MvaI	CCWGG	1 cut(s)	1080
MvnI	CGCG	1 cut(s)	773
MwoI	GCNNNNNNNGC	8 cut(s)	23, 359, 376, 431, 530, 687, 794, 1044
NciI	CCSGG	1 cut(s)	294
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	2 cut(s)	508, 1082
NlaIII	CATG	2 cut(s)	263, 388
NlaIV	GGNNCC	3 cut(s)	838, 922, 1084
NmeAIII	GCCGAG	1 cut(s)	1012
NspI	RCATGY	1 cut(s)	263
PceI	AGGCCT	2 cut(s)	138, 759
PctI	GAATGC	2 cut(s)	286, 681
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	269, 851, 965
PfoI	TCCNGGA	1 cut(s)	1078
PkrI	GCNGC	5 cut(s)	225, 307, 433, 799, 1021
PleI	GAGTC	2 cut(s)	1016, 1066
PpsI	GAGTC	2 cut(s)	1016, 1066
PpuMI	RGGWCCY	1 cut(s)	921
Psp5II	RGGWCCY	1 cut(s)	921
Psp6I	CCWGG	1 cut(s)	1078
PspFI	CCCAGC	1 cut(s)	1015
PspGI	CCWGG	1 cut(s)	1078
PspN4I	GGNNCC	3 cut(s)	838, 922, 1084
PspPI	GGNCC	2 cut(s)	184, 921
PspPPI	RGGWCCY	1 cut(s)	921
PstI	CTGCAG	1 cut(s)	508
PstNI	CAGNNNCTG	2 cut(s)	343, 1061
PsuI	RGATCY	2 cut(s)	508, 1082
RsaI	GTAC	2 cut(s)	413, 971
RsaNI	GTAC	2 cut(s)	412, 970
SaqAI	TTAA	2 cut(s)	828, 894
SatI	GCNGC	5 cut(s)	224, 306, 432, 798, 1020
Sau3AI	GATC	2 cut(s)	508, 1082
Sau96I	GGNCC	2 cut(s)	184, 921
SchI	GAGTC	2 cut(s)	1017, 1067
ScrFI	CCNGG	2 cut(s)	294, 1080
SduI	GDGCHC	1 cut(s)	877
SfaNI	GCATC	4 cut(s)	292, 418, 485, 852
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	2 cut(s)	184, 921
SmlI	CTYRAG	3 cut(s)	71, 803, 818
SmoI	CTYRAG	3 cut(s)	71, 803, 818
Sse9I	AATT	4 cut(s)	83, 631, 749, 973
SseBI	AGGCCT	2 cut(s)	138, 759
SsiI	CCGC	7 cut(s)	5, 30, 305, 524, 688, 1022, 1053
SspMI	CTAG	1 cut(s)	887
StuI	AGGCCT	2 cut(s)	138, 759
StyD4I	CCNGG	2 cut(s)	292, 1078
StyI	CCWWGG	2 cut(s)	180, 384
TaaI	ACNGT	5 cut(s)	241, 411, 421, 902, 910
TaiI	ACGT	1 cut(s)	1033
TaqI	TCGA	5 cut(s)	236, 246, 652, 698, 1066
TasI	AATT	4 cut(s)	83, 631, 749, 973
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	3 cut(s)	269, 851, 965
Tru1I	TTAA	2 cut(s)	828, 894
Tru9I	TTAA	2 cut(s)	828, 894
TscAI	CASTG	2 cut(s)	211, 291
TseI	GCWGC	4 cut(s)	223, 431, 797, 1019
TspDTI	ATGAA	1 cut(s)	966
TspGWI	ACGGA	1 cut(s)	587
TspRI	CASTG	2 cut(s)	211, 291
VpaK11BI	GGWCC	2 cut(s)	184, 921
XagI	CCTNNNNNAGG	1 cut(s)	179
XapI	RAATTY	1 cut(s)	83
XceI	RCATGY	1 cut(s)	263
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	1 cut(s)	887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.