Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013574

Physical Location & Seq

Genomic Coordinates Forward (+)

16868733 .. 16871440

Gene Structure 2708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G213600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCACTGGAGATGGCCATCAGGGCTTCAGCTACCCCAAGACCTTCCCTGCCTCCTTCTCCTTCTCCTTCGCTATCAGCCACAACCAAATGTTCTCTCAAACCCAAATTCAGACCCACCTCTGTATCACTGCCAACATCAACCATCTCTCTCTGCGCCCTCTTCACCTCTCCCTTTGAAGCCCAGGCTTTTAGCCTCTCCAAAGATCAGATAGTCTCTTCCCTTACTGAAGTGGAGCAGACAATTGATCAGGTTCAGCAAGCGGGTTCGACTGTTTTTGAAGGAACAGAGCGGGTTCTTGAAGCTATTTTAAATGCAGTAAAGCCCGGCATTGATGTGGCATTGCCGATTGCGAAACAGGCTGGAGAGCAGGCCCTGAAGATTGCCTCTCCTACAATTTCCGAGGTTTCAAAGAAAGCCCAAGAAGCAATACAAAGCTCAGGCTTTGATACGCAGCCTGTTCTGGGTGCTGCAAAGACGGTAGCGGATGCAGCAGGGCAGACCACTAAAGTAATTGAAGAGGCAAAGCCCATTGCTTCATCAACTATTCAGACCATCTCATCAGCAGATCCTATTGTGATTGCCGGAACTGCTGGAGCATTATTCCTCACATACCTTCTTCTTCCTCCCATCTGGTCTGCTCTCTCTTTTAGTCTCCGAGGTTACAAAGGTTCGCTTACCCCTGCTCAAACCCTTGATCTCATATCGACAAAGAATTACCTTCTGATCGATATTCGACCAGAGAAGGACAAGGACAAGGCAGGCATTCCCCGCCTACCATCTAGCGCCAAAAGCAAAATGATTGCTATTCCTTTAGAAGAACTACCAAACAAATTGCGAGGTCTTGTCAGAAATGCGAAGAAAGTAGAGGCTGAGATAGCAGCTTTGAAGATTTCTTTTCTCAAGAAAGTTAACAAGGGCTCCAACATTGTGATCTTGGACTCGTACTCGGATTCAGGCAAAATAGTTGCAAGAGCACTAACTAGTCTAGGCTTTAAGAAGTGCTGGACTGTAGCAGATGGGTTCTCTGGAAGCAAGGGATGGTTACAAAGTCGTTTAGGGGCGGATTCGTACAATTTATCTTTTGCTGAGGTGCTTTCACCATCAAGAGTCATCCCAGCAGCGGTTAGACGTTTTGGTACCAGTAGCAGCACAGCAGCTCAGTCTGGTCGAAAGCTTCTTCCTGGCTCCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010119 GO:0016020 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051716 GO:0055035 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0090333

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

399

Amino Acids

41.97

Weight (kDa)

9.56

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23060 AT5G23060
fragaria_vesca	FvH4_5g12950
malus_domestica	MD06G1208600.v1.1 MD14G1219000.v1.1
prunus_persica	Prupe.5G213600_v2.0.a1
pyrus_communis	pycom14g18150
rosa_chinensis	RchiOBHm_Chr7g0184231
rosa_laevigata	RLG00000004992
rosa_multiflora	Rmu_sc0012221.1_g000009 Rmu_sc0013812.1_g000003
rosa_roxburghii	Rroxscaffold_3G00269790
rosa_rugosa	Rorug06G0463900
rosa_samantha	Rh7AG081700 Rh7BG065600 Rh7CG065900 Rh7DG065600
rosa_wichuraiana	Rw7G005370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1139
AccB1I	GGYRCC	1 cut(s)	1139
AccBSI	CCGCTC	1 cut(s)	292
AciI	CCGC	6 cut(s)	263, 292, 485, 772, 1064, 1124
AclWI	GGATC	1 cut(s)	563
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	3 cut(s)	12, 249, 398
AfaI	GTAC	3 cut(s)	947, 1073, 1141
AfiI	CCNNNNNNNGG	2 cut(s)	464, 1123
AgsI	TTSAA	6 cut(s)	179, 281, 302, 411, 518, 889
AhlI	ACTAGT	1 cut(s)	983
AjnI	CCWGG	2 cut(s)	183, 1183
AluBI	AGCT	6 cut(s)	32, 305, 438, 884, 1160, 1177
AluI	AGCT	6 cut(s)	32, 305, 438, 884, 1160, 1177
Alw21I	GWGCWC	1 cut(s)	979
Alw26I	GTCTC	2 cut(s)	220, 659
AlwI	GGATC	1 cut(s)	563
AlwNI	CAGNNNCTG	1 cut(s)	376
AoxI	GGCC	2 cut(s)	15, 372
ApeKI	GCWGC	7 cut(s)	454, 470, 491, 881, 1121, 1149, 1157
ApoI	RAATTY	1 cut(s)	107
Asp718I	GGTACC	1 cut(s)	1139
AspLEI	GCGC	2 cut(s)	158, 788
AspS9I	GGNCC	1 cut(s)	373
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	2 cut(s)	157, 1092
BaeI	ACNNNNGTAYC	2 cut(s)	108, 141
BalI	TGGCCA	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	1139
BanII	GRGCYC	1 cut(s)	923
Bbv12I	GWGCWC	1 cut(s)	979
BbvCI	CCTCAGC	1 cut(s)	1089
BbvI	GCAGC	7 cut(s)	457, 466, 503, 893, 1133, 1161, 1169
BccI	CCATC	9 cut(s)	7, 26, 152, 563, 638, 787, 1013, 1035, 1111
BciT130I	CCWGG	2 cut(s)	185, 1185
BclI	TGATCA	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	2 cut(s)	220, 659
BcuI	ACTAGT	1 cut(s)	983
BfaI	CTAG	3 cut(s)	783, 984, 989
BfmI	CTRYAG	1 cut(s)	1011
BfoI	RGCGCY	1 cut(s)	789
BglI	GCCNNNNNGGC	1 cut(s)	23
BisI	GCNGC	7 cut(s)	455, 471, 492, 882, 1122, 1150, 1158
BlsI	GCNGC	7 cut(s)	456, 472, 493, 883, 1123, 1151, 1159
Bme1390I	CCNGG	3 cut(s)	185, 327, 1185
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	3 cut(s)	922, 1141, 1189
BmrFI	CCNGG	3 cut(s)	185, 327, 1185
BmsI	GCATC	1 cut(s)	478
BpmI	CTGGAG	3 cut(s)	29, 384, 615
Bpu10I	CCTNAGC	2 cut(s)	439, 1089
BpuEI	CTTGAG	1 cut(s)	887
BpuMI	CCSGG	1 cut(s)	327
Bsa29I	ATCGAT	1 cut(s)	729
BsaBI	GATNNNNATC	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	183, 402, 658
BsaXI	ACNNNNNCTCC	2 cut(s)	905, 935
Bsc4I	CCNNNNNNNGG	2 cut(s)	464, 1123
Bse1I	ACTGG	2 cut(s)	12, 1143
Bse3DI	GCAATG	2 cut(s)	341, 531
Bse8I	GATNNNNATC	1 cut(s)	17
BseBI	CCWGG	2 cut(s)	185, 1185
BseCI	ATCGAT	1 cut(s)	729
BseDI	CCNNGG	3 cut(s)	183, 402, 658
BseGI	GGATG	3 cut(s)	493, 1046, 1113
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	2 cut(s)	464, 1123
BseMI	GCAATG	2 cut(s)	341, 531
BseMII	CTCAG	4 cut(s)	453, 864, 1080, 1175
BseNI	ACTGG	2 cut(s)	12, 1143
BseXI	GCAGC	7 cut(s)	457, 466, 503, 893, 1133, 1161, 1169
BseYI	CCCAGC	1 cut(s)	1117
BshFI	GGCC	2 cut(s)	17, 374
BshNI	GGYRCC	1 cut(s)	1139
BshVI	ATCGAT	1 cut(s)	729
BsiHKAI	GWGCWC	1 cut(s)	979
BsiSI	CCGG	2 cut(s)	327, 585
BslI	CCNNNNNNNGG	2 cut(s)	464, 1123
BsmAI	GTCTC	2 cut(s)	220, 659
BsmI	GAATGC	1 cut(s)	765
BsnI	GGCC	2 cut(s)	17, 374
Bsp1286I	GDGCHC	2 cut(s)	923, 979
Bsp143I	GATC	6 cut(s)	205, 247, 568, 697, 726, 933
BspACI	CCGC	6 cut(s)	263, 292, 485, 772, 1064, 1124
BspANI	GGCC	2 cut(s)	17, 374
BspCNI	CTCAG	4 cut(s)	452, 865, 1081, 1174
BspDI	ATCGAT	1 cut(s)	729
BspLI	GGNNCC	3 cut(s)	922, 1141, 1189
BspPI	GGATC	1 cut(s)	563
BspT107I	GGYRCC	1 cut(s)	1139
BsrBI	CCGCTC	1 cut(s)	292
BsrDI	GCAATG	2 cut(s)	341, 531
BsrI	ACTGG	2 cut(s)	12, 1143
BssECI	CCNNGG	3 cut(s)	183, 402, 658
BssMI	GATC	6 cut(s)	205, 247, 568, 697, 726, 933
Bst2UI	CCWGG	2 cut(s)	185, 1185
Bst4CI	ACNGT	3 cut(s)	274, 481, 1012
Bst6I	CTCTTC	3 cut(s)	167, 223, 513
BstC8I	GCNNGC	3 cut(s)	261, 372, 763
BstDEI	CTNAG	4 cut(s)	439, 873, 1089, 1161
BstF5I	GGATG	3 cut(s)	493, 1046, 1113
BstH2I	RGCGCY	1 cut(s)	789
BstHHI	GCGC	2 cut(s)	158, 788
BstKTI	GATC	6 cut(s)	208, 250, 571, 700, 729, 936
BstMAI	GTCTC	2 cut(s)	220, 659
BstMBI	GATC	6 cut(s)	205, 247, 568, 697, 726, 933
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 359, 425, 491, 590, 771, 792, 878
BstNI	CCWGG	2 cut(s)	185, 1185
BstSCI	CCNGG	3 cut(s)	183, 325, 1183
BstSFI	CTRYAG	1 cut(s)	1011
BstV1I	GCAGC	7 cut(s)	457, 466, 503, 893, 1133, 1161, 1169
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
Bsu15I	ATCGAT	1 cut(s)	729
BsuRI	GGCC	2 cut(s)	17, 374
BsuTUI	ATCGAT	1 cut(s)	729
BtsCI	GGATG	3 cut(s)	493, 1046, 1113
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	2 cut(s)	5, 128
Cac8I	GCNNGC	3 cut(s)	261, 372, 763
CaiI	CAGNNNCTG	1 cut(s)	376
CfoI	GCGC	2 cut(s)	158, 788
Cfr13I	GGNCC	1 cut(s)	373
ClaI	ATCGAT	1 cut(s)	729
Csp6I	GTAC	3 cut(s)	946, 1072, 1140
CviQI	GTAC	3 cut(s)	946, 1072, 1140
DdeI	CTNAG	4 cut(s)	439, 873, 1089, 1161
DpnI	GATC	6 cut(s)	207, 249, 570, 699, 728, 935
DpnII	GATC	6 cut(s)	205, 247, 568, 697, 726, 933
DraI	TTTAAA	1 cut(s)	312
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	3 cut(s)	167, 223, 513
EarI	CTCTTC	3 cut(s)	167, 223, 513
EciI	GGCGGA	1 cut(s)	1079
Eco24I	GRGCYC	1 cut(s)	923
Eco57I	CTGAAG	3 cut(s)	12, 249, 398
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	2 cut(s)	183, 1183
EcoT38I	GRGCYC	1 cut(s)	923
FaiI	YATR	2 cut(s)	613, 704
FalI	AAGNNNNNCTT	2 cut(s)	660, 692
FauI	CCCGC	3 cut(s)	256, 285, 779
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	7 cut(s)	455, 471, 492, 882, 1122, 1150, 1158
FokI	GGATG	3 cut(s)	500, 1053, 1100
FriOI	GRGCYC	1 cut(s)	923
Fsp4HI	GCNGC	7 cut(s)	455, 471, 492, 882, 1122, 1150, 1158
FspBI	CTAG	3 cut(s)	783, 984, 989
GlaI	GCGC	2 cut(s)	157, 787
GluI	GCNGC	7 cut(s)	455, 471, 492, 882, 1122, 1150, 1158
GsaI	CCCAGC	1 cut(s)	1121
GsuI	CTGGAG	3 cut(s)	29, 384, 615
HaeII	RGCGCY	1 cut(s)	789
HaeIII	GGCC	2 cut(s)	17, 374
HapII	CCGG	2 cut(s)	327, 585
HhaI	GCGC	2 cut(s)	158, 788
Hin6I	GCGC	2 cut(s)	156, 786
HinP1I	GCGC	2 cut(s)	156, 786
HincII	GTYRAC	1 cut(s)	913
HindII	GTYRAC	1 cut(s)	913
HindIII	AAGCTT	1 cut(s)	1175
HinfI	GANTC	4 cut(s)	941, 953, 1067, 1110
HpaI	GTTAAC	1 cut(s)	913
HpaII	CCGG	2 cut(s)	327, 585
HphI	GGTGA	2 cut(s)	157, 1092
Hpy166II	GTNNAC	1 cut(s)	913
Hpy188I	TCNGA	9 cut(s)	113, 210, 403, 552, 659, 726, 851, 952, 1192
Hpy188III	TCNNGA	4 cut(s)	299, 904, 1029, 1107
Hpy8I	GTNNAC	1 cut(s)	913
HpyAV	CCTTC	8 cut(s)	54, 66, 72, 78, 275, 626, 731, 739
HpyCH4III	ACNGT	3 cut(s)	274, 481, 1012
HpyCH4IV	ACGT	1 cut(s)	1132
HpyCH4V	TGCA	4 cut(s)	317, 473, 491, 971
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 359, 425, 491, 590, 771, 792, 878
HpyF3I	CTNAG	4 cut(s)	439, 873, 1089, 1161
HpySE526I	ACGT	1 cut(s)	1132
HspAI	GCGC	2 cut(s)	156, 786
KpnI	GGTACC	1 cut(s)	1143
Ksp22I	TGATCA	1 cut(s)	247
KspAI	GTTAAC	1 cut(s)	913
Kzo9I	GATC	6 cut(s)	205, 247, 568, 697, 726, 933
LmnI	GCTCC	4 cut(s)	235, 596, 926, 1193
Lsp1109I	GCAGC	7 cut(s)	457, 466, 503, 893, 1133, 1161, 1169
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	3 cut(s)	783, 984, 989
MaeII	ACGT	1 cut(s)	1132
MaeIII	GTNAC	2 cut(s)	662, 1044
MalI	GATC	6 cut(s)	207, 249, 570, 699, 728, 935
MbiI	CCGCTC	1 cut(s)	292
MboI	GATC	6 cut(s)	205, 247, 568, 697, 726, 933
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	2 cut(s)	923, 979
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	7 cut(s)	107, 243, 396, 513, 715, 833, 1075
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	2 cut(s)	935, 1119
MmeI	TCCRAC	1 cut(s)	948
Mox20I	TGGCCA	1 cut(s)	17
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	3 cut(s)	311, 912, 996
MslI	CAYNNNNRTG	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	1124
MspI	CCGG	2 cut(s)	327, 585
MspR9I	CCNGG	3 cut(s)	185, 327, 1185
MunI	CAATTG	1 cut(s)	243
Mva1269I	GAATGC	1 cut(s)	765
MvaI	CCWGG	2 cut(s)	185, 1185
MwoI	GCNNNNNNNGC	8 cut(s)	23, 359, 425, 491, 590, 771, 792, 878
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	6 cut(s)	205, 247, 568, 697, 726, 933
NlaIV	GGNNCC	3 cut(s)	922, 1141, 1189
PctI	GAATGC	1 cut(s)	765
PfeI	GAWTC	2 cut(s)	953, 1067
PkrI	GCNGC	7 cut(s)	456, 472, 493, 883, 1123, 1151, 1159
PleI	GAGTC	2 cut(s)	935, 1118
PpsI	GAGTC	2 cut(s)	935, 1118
Psp6I	CCWGG	2 cut(s)	183, 1183
PspFI	CCCAGC	1 cut(s)	1117
PspGI	CCWGG	2 cut(s)	183, 1183
PspN4I	GGNNCC	3 cut(s)	922, 1141, 1189
PspPI	GGNCC	1 cut(s)	373
PstNI	CAGNNNCTG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	568
RsaI	GTAC	3 cut(s)	947, 1073, 1141
RsaNI	GTAC	3 cut(s)	946, 1072, 1140
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	3 cut(s)	311, 912, 996
SatI	GCNGC	7 cut(s)	455, 471, 492, 882, 1122, 1150, 1158
Sau3AI	GATC	6 cut(s)	205, 247, 568, 697, 726, 933
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	2 cut(s)	935, 1119
ScrFI	CCNGG	3 cut(s)	185, 327, 1185
SduI	GDGCHC	2 cut(s)	923, 979
SfaNI	GCATC	1 cut(s)	478
SfcI	CTRYAG	1 cut(s)	1011
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	902
SmoI	CTYRAG	1 cut(s)	902
SpeI	ACTAGT	1 cut(s)	983
Sse9I	AATT	7 cut(s)	107, 243, 396, 513, 715, 833, 1075
SsiI	CCGC	6 cut(s)	263, 292, 485, 772, 1064, 1124
SspMI	CTAG	3 cut(s)	783, 984, 989
StyD4I	CCNGG	3 cut(s)	183, 325, 1183
TaaI	ACNGT	3 cut(s)	274, 481, 1012
TaiI	ACGT	1 cut(s)	1135
TaqI	TCGA	5 cut(s)	269, 707, 729, 736, 1171
TasI	AATT	7 cut(s)	107, 243, 396, 513, 715, 833, 1075
TfiI	GAWTC	2 cut(s)	953, 1067
Tru1I	TTAA	3 cut(s)	311, 912, 996
Tru9I	TTAA	3 cut(s)	311, 912, 996
TscAI	CASTG	2 cut(s)	12, 135
TseI	GCWGC	7 cut(s)	454, 470, 491, 881, 1121, 1149, 1157
TspDTI	ATGAA	1 cut(s)	528
TspRI	CASTG	2 cut(s)	12, 135
XapI	RAATTY	1 cut(s)	107
XspI	CTAG	3 cut(s)	783, 984, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.