Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0013574

Physical Location & Seq

Genomic Coordinates Reverse (-)

4325362 .. 4327615

Gene Structure 2254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG065600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCAGTGGAGATGGCCATCAGAGCTTCAGTCACCCCAAGACCTCATATTTCTCTTCCTCCTCCTCCTTCTCCTTCACCATCATCCACACCTAAATTTTCTTTCAAACCCCAATTCAGACCCATCTCTGTATCACTCCCAACATCAACTACCCTCTCTCTCTTGGCTCTCTTCACCTCTCCCTTTGAAGCCAAGGCCTTTAGCCTCTCCAAGGATCAAATAGTCTCTTCCCTCACTGAAGTGGAGCAGACAATTGATCAAGTTCAGCAAGTGGGTTCCAGTGTTTTTGTTAACACAGAGCGTTTTCTTGAAGCTTTTTTAAATGCAGTGAAGCCTGGCATGGATGTGGCATTGCCAATTGCTAAGGAGGCTGGAGAACAAGCACTGAAGATAGCTTCTCCTGCAATTTCTGAGGTTTCAAAGAAAGCCCAAGAAGCAATTCAAAGTTCCGGGATTGACACAGAGCCTGTTTACAATGCTGCAAAGACGATAGGTGATGCAGCAGGACAGACCACCAAAGTAATTCAAGATGCCAAGCCCATTGCTTCATCAACTGTCGAGACCATTTCATCAGCGGATCCTGTTGTGATTGCTGGAACTGCTGGAGTAATATTCCTCACATACTTCCTTCTTCCTCCAATTTGGTCTGCTATCTCTTTTAACCTCAGAGGATACAAAGGTGCCCTCACTCCTGCTCAAACCCTTGATCTCGTTTCTACGAAGAACCACCTTCTGATCGATATTCGACCAGAGAAGGAAAAGGACAAGGCCGGCATTCCTCGCCTTCCATCTAGTGCCAAAAGCAAATTGATTGCTATTCCCTTGGAAGAACTACCAAGCAAATTGAAAGGCCTGGTCAGAAATGTGAAGAAAGTAGAGGCTGAGATAGCAGCTTTGAAAATTGCTTGTCTCAAGAGAGTTAACAAAGGCACCAACATCGTCATCTTGGACTCGTACTCTGATTCAGGTAAAATAGTAGCAAGAGCACTAACTAATCTAGGCTTTAAGAACACCTGGATTGTAGCAGACGGGTTCTCCGGAAACAAAGGGTGGTTACAGAGTCGTTTAGGGACAGATTCATACAATTTCTCCTTTGCTGAGGTGATTTCACCGTCAAGAATTATCCCAGCAGCTATCAGACGTTTTGGTACTACAGCTCAGTCTGGTCGAAAGCTTCTTTCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010119 GO:0016020 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051716 GO:0055035 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0090333

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

395

Amino Acids

42.24

Weight (kDa)

9.55

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23060 AT5G23060
fragaria_vesca	FvH4_5g12950
malus_domestica	MD06G1208600.v1.1 MD14G1219000.v1.1
prunus_persica	Prupe.5G213600_v2.0.a1
pyrus_communis	pycom14g18150
rosa_chinensis	RchiOBHm_Chr7g0184231
rosa_laevigata	RLG00000004992
rosa_multiflora	Rmu_sc0012221.1_g000009 Rmu_sc0013812.1_g000003
rosa_roxburghii	Rroxscaffold_3G00269790
rosa_rugosa	Rorug06G0463900
rosa_samantha	Rh7AG081700 Rh7BG065600 Rh7CG065900 Rh7DG065600
rosa_wichuraiana	Rw7G005370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	680, 929
AccIII	TCCGGA	1 cut(s)	1037
AciI	CCGC	1 cut(s)	575
AclWI	GGATC	3 cut(s)	222, 572, 585
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	95
AcuI	CTGAAG	3 cut(s)	12, 258, 407
AfaI	GTAC	2 cut(s)	956, 1150
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	8 cut(s)	106, 188, 311, 420, 443, 527, 847, 898
AjnI	CCWGG	3 cut(s)	334, 852, 1013
AjuI	GAANNNNNNNTTGG	2 cut(s)	423, 455
AleI	CACNNNNGTG	1 cut(s)	239
AluBI	AGCT	7 cut(s)	26, 314, 395, 893, 1133, 1157, 1174
AluI	AGCT	7 cut(s)	26, 314, 395, 893, 1133, 1157, 1174
Alw21I	GWGCWC	1 cut(s)	988
Alw26I	GTCTC	3 cut(s)	229, 554, 914
AlwI	GGATC	3 cut(s)	222, 572, 585
AlwNI	CAGNNNCTG	1 cut(s)	467
Aor13HI	TCCGGA	1 cut(s)	1037
AoxI	GGCC	4 cut(s)	15, 195, 768, 850
ApeKI	GCWGC	4 cut(s)	479, 500, 890, 1130
ApoI	RAATTY	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	438
AsuC2I	CCSGG	1 cut(s)	451
AsuHPI	GGTGA	6 cut(s)	25, 69, 166, 506, 1101, 1114
BaeGI	GKGCMC	1 cut(s)	685
BaeI	ACNNNNGTAYC	2 cut(s)	664, 697
BalI	TGGCCA	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	577
BanI	GGYRCC	2 cut(s)	680, 929
Bbv12I	GWGCWC	1 cut(s)	988
BbvCI	CCTCAGC	1 cut(s)	1098
BbvI	GCAGC	4 cut(s)	466, 512, 902, 1142
BccI	CCATC	5 cut(s)	7, 26, 88, 131, 796
BcgI	CGANNNNNNTGC	2 cut(s)	919, 953
BciT130I	CCWGG	3 cut(s)	336, 854, 1015
BciVI	GTATCC	1 cut(s)	665
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	451
BcoDI	GTCTC	3 cut(s)	229, 554, 914
BfaI	CTAG	2 cut(s)	792, 998
BfmI	CTRYAG	1 cut(s)	1152
BfuI	GTATCC	1 cut(s)	665
BisI	GCNGC	4 cut(s)	480, 501, 891, 1131
BlsI	GCNGC	4 cut(s)	481, 502, 892, 1132
Bme1390I	CCNGG	4 cut(s)	336, 451, 854, 1015
BmiI	GGNNCC	4 cut(s)	277, 579, 682, 931
BmrFI	CCNGG	4 cut(s)	336, 451, 854, 1015
BmsI	GCATC	2 cut(s)	487, 520
BpmI	CTGGAG	2 cut(s)	393, 624
Bpu10I	CCTNAGC	2 cut(s)	363, 1098
BpuEI	CTTGAG	1 cut(s)	896
BpuMI	CCSGG	1 cut(s)	451
Bsa29I	ATCGAT	1 cut(s)	738
BsaBI	GATNNNNATC	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	3 cut(s)	192, 210, 822
BsaWI	WCCGGW	1 cut(s)	1037
BsaXI	ACNNNNNCTCC	4 cut(s)	1019, 1049, 1073, 1103
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse118I	RCCGGY	1 cut(s)	770
Bse1I	ACTGG	1 cut(s)	279
Bse3DI	GCAATG	2 cut(s)	350, 540
Bse8I	GATNNNNATC	1 cut(s)	17
BseAI	TCCGGA	1 cut(s)	1037
BseBI	CCWGG	3 cut(s)	336, 854, 1015
BseCI	ATCGAT	1 cut(s)	738
BseDI	CCNNGG	3 cut(s)	192, 210, 822
BseGI	GGATG	2 cut(s)	83, 349
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMI	GCAATG	2 cut(s)	350, 540
BseMII	CTCAG	5 cut(s)	402, 679, 873, 1089, 1172
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	2 cut(s)	51, 54
BseSI	GKGCMC	1 cut(s)	685
BseXI	GCAGC	4 cut(s)	466, 512, 902, 1142
BseYI	CCCAGC	1 cut(s)	1126
BshFI	GGCC	4 cut(s)	17, 197, 770, 852
BshNI	GGYRCC	2 cut(s)	680, 929
BshVI	ATCGAT	1 cut(s)	738
BsiHKAI	GWGCWC	1 cut(s)	988
BsiSI	CCGG	3 cut(s)	450, 771, 1038
BslFI	GGGAC	1 cut(s)	1084
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	3 cut(s)	229, 554, 914
BsmFI	GGGAC	1 cut(s)	1084
BsmI	GAATGC	1 cut(s)	774
BsnI	GGCC	4 cut(s)	17, 197, 770, 852
Bso31I	GGTCTC	1 cut(s)	554
Bsp1286I	GDGCHC	2 cut(s)	685, 988
Bsp13I	TCCGGA	1 cut(s)	1037
Bsp143I	GATC	5 cut(s)	214, 256, 577, 706, 735
BspACI	CCGC	1 cut(s)	575
BspANI	GGCC	4 cut(s)	17, 197, 770, 852
BspCNI	CTCAG	5 cut(s)	403, 678, 874, 1090, 1171
BspDI	ATCGAT	1 cut(s)	738
BspEI	TCCGGA	1 cut(s)	1037
BspLI	GGNNCC	4 cut(s)	277, 579, 682, 931
BspPI	GGATC	3 cut(s)	222, 572, 585
BspT107I	GGYRCC	2 cut(s)	680, 929
BspTNI	GGTCTC	1 cut(s)	554
BsrDI	GCAATG	2 cut(s)	350, 540
BsrFI	RCCGGY	1 cut(s)	770
BsrI	ACTGG	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	770
BssECI	CCNNGG	3 cut(s)	192, 210, 822
BssMI	GATC	5 cut(s)	214, 256, 577, 706, 735
BssT1I	CCWWGG	3 cut(s)	192, 210, 822
Bst2UI	CCWGG	3 cut(s)	336, 854, 1015
Bst4CI	ACNGT	2 cut(s)	556, 1113
Bst6I	CTCTTC	3 cut(s)	60, 176, 232
BstC8I	GCNNGC	1 cut(s)	772
BstDEI	CTNAG	6 cut(s)	363, 411, 665, 882, 1098, 1158
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	83, 349
BstKTI	GATC	5 cut(s)	217, 259, 580, 709, 738
BstMAI	GTCTC	3 cut(s)	229, 554, 914
BstMBI	GATC	5 cut(s)	214, 256, 577, 706, 735
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 368, 401, 434, 599, 780, 887
BstNI	CCWGG	3 cut(s)	336, 854, 1015
BstSCI	CCNGG	4 cut(s)	334, 449, 852, 1013
BstSFI	CTRYAG	1 cut(s)	1152
BstSLI	GKGCMC	1 cut(s)	685
BstV1I	GCAGC	4 cut(s)	466, 512, 902, 1142
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
Bsu15I	ATCGAT	1 cut(s)	738
BsuI	GTATCC	1 cut(s)	665
BsuRI	GGCC	4 cut(s)	17, 197, 770, 852
BsuTUI	ATCGAT	1 cut(s)	738
BtsCI	GGATG	2 cut(s)	83, 349
BtsI	GCAGTG	2 cut(s)	12, 333
BtsIMutI	CAGTG	5 cut(s)	12, 234, 286, 333, 383
Cac8I	GCNNGC	1 cut(s)	772
CaiI	CAGNNNCTG	1 cut(s)	467
Cfr10I	RCCGGY	1 cut(s)	770
ClaI	ATCGAT	1 cut(s)	738
Csp6I	GTAC	2 cut(s)	955, 1149
CviAII	CATG	1 cut(s)	340
CviQI	GTAC	2 cut(s)	955, 1149
DdeI	CTNAG	6 cut(s)	363, 411, 665, 882, 1098, 1158
DpnI	GATC	5 cut(s)	216, 258, 579, 708, 737
DpnII	GATC	5 cut(s)	214, 256, 577, 706, 735
DraI	TTTAAA	1 cut(s)	321
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	3 cut(s)	60, 176, 232
EarI	CTCTTC	3 cut(s)	60, 176, 232
Eco130I	CCWWGG	3 cut(s)	192, 210, 822
Eco147I	AGGCCT	2 cut(s)	197, 852
Eco31I	GGTCTC	1 cut(s)	554
Eco57I	CTGAAG	3 cut(s)	12, 258, 407
EcoNI	CCTNNNNNAGG	1 cut(s)	209
EcoRII	CCWGG	3 cut(s)	334, 852, 1013
EcoT14I	CCWWGG	3 cut(s)	192, 210, 822
ErhI	CCWWGG	3 cut(s)	192, 210, 822
FaeI	CATG	1 cut(s)	343
FaiI	YATR	4 cut(s)	48, 341, 622, 1081
FaqI	GGGAC	1 cut(s)	1084
FatI	CATG	1 cut(s)	339
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	4 cut(s)	480, 501, 891, 1131
FokI	GGATG	2 cut(s)	70, 356
Fsp4HI	GCNGC	4 cut(s)	480, 501, 891, 1131
FspBI	CTAG	2 cut(s)	792, 998
GluI	GCNGC	4 cut(s)	480, 501, 891, 1131
GsaI	CCCAGC	1 cut(s)	1130
GsuI	CTGGAG	2 cut(s)	393, 624
HaeIII	GGCC	4 cut(s)	17, 197, 770, 852
HapII	CCGG	3 cut(s)	450, 771, 1038
Hin1II	CATG	1 cut(s)	343
HincII	GTYRAC	2 cut(s)	292, 922
HindII	GTYRAC	2 cut(s)	292, 922
HindIII	AAGCTT	2 cut(s)	312, 1172
HinfI	GANTC	4 cut(s)	950, 962, 1060, 1076
HpaI	GTTAAC	2 cut(s)	292, 922
HpaII	CCGG	3 cut(s)	450, 771, 1038
HphI	GGTGA	6 cut(s)	25, 69, 166, 506, 1101, 1114
Hpy166II	GTNNAC	3 cut(s)	292, 472, 922
Hpy188I	TCNGA	9 cut(s)	23, 119, 412, 668, 735, 860, 961, 1139, 1183
Hpy188III	TCNNGA	6 cut(s)	308, 527, 559, 913, 1038, 1116
Hpy8I	GTNNAC	3 cut(s)	292, 472, 922
HpyAV	CCTTC	6 cut(s)	78, 84, 638, 740, 748, 794
HpyCH4III	ACNGT	2 cut(s)	556, 1113
HpyCH4IV	ACGT	1 cut(s)	1141
HpyCH4V	TGCA	4 cut(s)	326, 404, 482, 500
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 368, 401, 434, 599, 780, 887
HpyF3I	CTNAG	6 cut(s)	363, 411, 665, 882, 1098, 1158
HpySE526I	ACGT	1 cut(s)	1141
Hsp92II	CATG	1 cut(s)	343
Kpn2I	TCCGGA	1 cut(s)	1037
KroI	GCCGGC	1 cut(s)	770
KroNI	GCCGGC	1 cut(s)	772
Ksp22I	TGATCA	1 cut(s)	256
KspAI	GTTAAC	2 cut(s)	292, 922
Kzo9I	GATC	5 cut(s)	214, 256, 577, 706, 735
LmnI	GCTCC	1 cut(s)	244
Lsp1109I	GCAGC	4 cut(s)	466, 512, 902, 1142
LweI	GCATC	2 cut(s)	487, 520
MaeI	CTAG	2 cut(s)	792, 998
MaeII	ACGT	1 cut(s)	1141
MaeIII	GTNAC	2 cut(s)	31, 1053
MalI	GATC	5 cut(s)	216, 258, 579, 708, 737
MboI	GATC	5 cut(s)	214, 256, 577, 706, 735
MboII	GAAGA	8 cut(s)	47, 163, 219, 400, 623, 733, 839, 880
MfeI	CAATTG	2 cut(s)	252, 357
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	2 cut(s)	685, 988
MlsI	TGGCCA	1 cut(s)	17
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	2 cut(s)	944, 1069
Mox20I	TGGCCA	1 cut(s)	17
MroI	TCCGGA	1 cut(s)	1037
MroNI	GCCGGC	1 cut(s)	770
MroXI	GAANNNNTTC	1 cut(s)	438
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	5 cut(s)	291, 320, 660, 921, 1005
MslI	CAYNNNNRTG	2 cut(s)	239, 344
Msp20I	TGGCCA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	3 cut(s)	450, 771, 1038
MspR9I	CCNGG	4 cut(s)	336, 451, 854, 1015
MunI	CAATTG	2 cut(s)	252, 357
Mva1269I	GAATGC	1 cut(s)	774
MvaI	CCWGG	3 cut(s)	336, 854, 1015
MwoI	GCNNNNNNNGC	7 cut(s)	23, 368, 401, 434, 599, 780, 887
NaeI	GCCGGC	1 cut(s)	772
NciI	CCSGG	1 cut(s)	451
NdeII	GATC	5 cut(s)	214, 256, 577, 706, 735
NgoMIV	GCCGGC	1 cut(s)	770
NlaIII	CATG	1 cut(s)	343
NlaIV	GGNNCC	4 cut(s)	277, 579, 682, 931
NmuCI	GTSAC	1 cut(s)	31
OliI	CACNNNNGTG	1 cut(s)	239
PceI	AGGCCT	2 cut(s)	197, 852
PctI	GAATGC	1 cut(s)	774
PdiI	GCCGGC	1 cut(s)	772
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	2 cut(s)	962, 1076
PfoI	TCCNGGA	1 cut(s)	449
PkrI	GCNGC	4 cut(s)	481, 502, 892, 1132
PleI	GAGTC	2 cut(s)	944, 1068
PpsI	GAGTC	2 cut(s)	944, 1068
Psp6I	CCWGG	3 cut(s)	334, 852, 1013
PspFI	CCCAGC	1 cut(s)	1126
PspGI	CCWGG	3 cut(s)	334, 852, 1013
PspN4I	GGNNCC	4 cut(s)	277, 579, 682, 931
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	577
RsaI	GTAC	2 cut(s)	956, 1150
RsaNI	GTAC	2 cut(s)	955, 1149
RseI	CAYNNNNRTG	2 cut(s)	239, 344
SaqAI	TTAA	5 cut(s)	291, 320, 660, 921, 1005
SatI	GCNGC	4 cut(s)	480, 501, 891, 1131
Sau3AI	GATC	5 cut(s)	214, 256, 577, 706, 735
SchI	GAGTC	2 cut(s)	944, 1069
ScrFI	CCNGG	4 cut(s)	336, 451, 854, 1015
SduI	GDGCHC	2 cut(s)	685, 988
SfaNI	GCATC	2 cut(s)	487, 520
SfcI	CTRYAG	1 cut(s)	1152
SmiMI	CAYNNNNRTG	2 cut(s)	239, 344
SmlI	CTYRAG	1 cut(s)	911
SmoI	CTYRAG	1 cut(s)	911
SseBI	AGGCCT	2 cut(s)	197, 852
SsiI	CCGC	1 cut(s)	575
SspI	AATATT	1 cut(s)	612
SspMI	CTAG	2 cut(s)	792, 998
StuI	AGGCCT	2 cut(s)	197, 852
StyD4I	CCNGG	4 cut(s)	334, 449, 852, 1013
StyI	CCWWGG	3 cut(s)	192, 210, 822
TaaI	ACNGT	2 cut(s)	556, 1113
TaiI	ACGT	1 cut(s)	1144
TaqI	TCGA	4 cut(s)	558, 738, 745, 1168
TfiI	GAWTC	2 cut(s)	962, 1076
Tru1I	TTAA	5 cut(s)	291, 320, 660, 921, 1005
Tru9I	TTAA	5 cut(s)	291, 320, 660, 921, 1005
TscAI	CASTG	5 cut(s)	12, 241, 286, 333, 390
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	4 cut(s)	479, 500, 890, 1130
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	537, 558, 1068
TspRI	CASTG	5 cut(s)	12, 241, 286, 333, 390
XagI	CCTNNNNNAGG	1 cut(s)	209
XapI	RAATTY	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	2 cut(s)	792, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.