Rroxscaffold_3G00269790

calcium sensing receptor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
62541339 .. 62546308
4970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00269790.1

Sequence Viewer

Length: 1206 bp
ATGGCAGTGGAGATGGCCATCAGAGCTTCAGTCACCCCAAGACCTCATATTTCTCTTCCTGCTCCTCCTCCTCCTTCTTCTTCTCCTTCACCATCATCATCATCCACACCTAAATTTTCTTTCAAACCCCAATTCAGACCCATCTCTGTATCACTCCCAACATCAACTACCCTCTCTCTCTTGGCCCTCTTCACCACTCCCTTTGAAGCCAAGGCCTTTAGCCTCTCCAAGGATCAAATAGTCTCTTCCCTCACTGAAGTGGAGCAGACAATTGATCAAGTTCAGCAAGTGGGTTCCAGTGTTTTTGTTAACACACAGCGTTTTCTTGAAGCTTTTTTAAATGCAGTGAAGCCTGGCATGGATGTGGCATTGCCAATTGCTAAGCAGGCTGGAGAACAAGCACTGAAGATAGCTTCTCCTGCAATTTCTGAGGTTTCAAAGAAAGCCCAAGAAGCAATTCAAAGTTCCGGGATTGACACAGAGCCTGTTTACAGAGCTGCAAAGACGATAGGTGATGCAGCAGGACAGACCACCAAAGTAATTCAAGATGCCAAGCCCATTGCTTCATCAACTGTCGAGACCATTTCATCAGCGGATCCTGTTGTGATTGCTGGAACTGCTGGACTAATATTCCTCACATACTTCCTTCTTCCTCCAATTTGGTCTGCTATCTCTTTTAACCTCAGAGGATACAAAGGTGCCCTCACTCCTGCTCAAACCCTTGATCTCGTTTCTACGAAGAACCACCTTCTGATCGATATTCGATCAGAGAAGGAAAAGGACAAGGCCGGCATTCCTCGCCTTCCATCTAGTGCCAAAAGCAAATTGATTGCTATTCCCTTGGAAGAACTACCAAGCAAATTGAAAGGCCTAGTCAGAAATGTGAAGAAAGTAGAGGCTGAGATAGCAGCTTTGAAAATTGCTTATCTCAAGAGAGTTAACAAAGGCACCAACATCGTCATCTTGGACTCGTACTCTGATTCAGGTAAAATAGTAGCAAGAGCACTAACTAATCTAGGCTTTAAGAACACCTGGATTGTAGCAGACGGGTTCTCCGGAAACAGGGGGTGGTTACAGAGTCGTTTAGGGACAGATTCATACAATTTCTCCTTTGCTGAGGTGATTTCACCGTCAAGAATCATCCCAGCAGCTACCAGACGTTTTGGTACTACAGCTCAGTCTGGTCGAAAGCTTCTTTCAGAATAA

Protein Analysis

401

Amino Acids

42.89

Weight (kDa)

9.77

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013574)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 698, 947
AccIII TCCGGA 1 cut(s) 1055
AciI CCGC 1 cut(s) 593
AclWI GGATC 3 cut(s) 240, 590, 603
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 3 cut(s) 12, 276, 425
AfaI GTAC 2 cut(s) 974, 1168
AfiI CCNNNNNNNGG 2 cut(s) 229, 1062
AgsI TTSAA 8 cut(s) 124, 206, 329, 438, 461, 545, 865, 916
AjnI CCWGG 2 cut(s) 352, 1031
AjuI GAANNNNNNNTTGG 2 cut(s) 441, 473
AleI CACNNNNGTG 1 cut(s) 257
AluBI AGCT 8 cut(s) 26, 332, 413, 497, 911, 1151, 1175, 1192
AluI AGCT 8 cut(s) 26, 332, 413, 497, 911, 1151, 1175, 1192
Alw21I GWGCWC 1 cut(s) 1006
Alw26I GTCTC 2 cut(s) 247, 572
AlwI GGATC 3 cut(s) 240, 590, 603
AlwNI CAGNNNCTG 1 cut(s) 485
Aor13HI TCCGGA 1 cut(s) 1055
AoxI GGCC 5 cut(s) 15, 183, 213, 786, 868
ApeKI GCWGC 4 cut(s) 497, 518, 908, 1148
ApoI RAATTY 1 cut(s) 113
Asp700I GAANNNNTTC 1 cut(s) 456
AspS9I GGNCC 1 cut(s) 184
AsuC2I CCSGG 1 cut(s) 469
AsuHPI GGTGA 6 cut(s) 25, 81, 184, 524, 1119, 1132
BaeGI GKGCMC 1 cut(s) 703
BaeI ACNNNNGTAYC 2 cut(s) 682, 715
BalI TGGCCA 1 cut(s) 17
BamHI GGATCC 1 cut(s) 595
BanI GGYRCC 2 cut(s) 698, 947
Bbv12I GWGCWC 1 cut(s) 1006
BbvCI CCTCAGC 1 cut(s) 1116
BbvI GCAGC 4 cut(s) 484, 530, 920, 1160
BccI CCATC 5 cut(s) 7, 26, 100, 149, 814
BcgI CGANNNNNNTGC 2 cut(s) 937, 971
BciT130I CCWGG 2 cut(s) 354, 1033
BciVI GTATCC 1 cut(s) 683
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 1 cut(s) 469
BcoDI GTCTC 2 cut(s) 247, 572
BfaI CTAG 3 cut(s) 810, 872, 1016
BfmI CTRYAG 1 cut(s) 1170
BfuI GTATCC 1 cut(s) 683
BisI GCNGC 4 cut(s) 498, 519, 909, 1149
BlpI GCTNAGC 1 cut(s) 381
BlsI GCNGC 4 cut(s) 499, 520, 910, 1150
Bme1390I CCNGG 3 cut(s) 354, 469, 1033
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 4 cut(s) 295, 597, 700, 949
BmrFI CCNGG 3 cut(s) 354, 469, 1033
BmsI GCATC 2 cut(s) 505, 538
BpmI CTGGAG 1 cut(s) 411
Bpu10I CCTNAGC 1 cut(s) 1116
Bpu1102I GCTNAGC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 914
BpuMI CCSGG 1 cut(s) 469
Bsa29I ATCGAT 1 cut(s) 756
BsaBI GATNNNNATC 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 3 cut(s) 210, 228, 840
BsaWI WCCGGW 1 cut(s) 1055
BsaXI ACNNNNNCTCC 4 cut(s) 1037, 1067, 1091, 1121
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 1062
Bse118I RCCGGY 1 cut(s) 788
Bse1I ACTGG 1 cut(s) 297
Bse3DI GCAATG 2 cut(s) 368, 558
Bse8I GATNNNNATC 1 cut(s) 17
BseAI TCCGGA 1 cut(s) 1055
BseBI CCWGG 2 cut(s) 354, 1033
BseCI ATCGAT 1 cut(s) 756
BseDI CCNNGG 3 cut(s) 210, 228, 840
BseGI GGATG 3 cut(s) 101, 367, 1140
BseJI GATNNNNATC 1 cut(s) 17
BseLI CCNNNNNNNGG 2 cut(s) 229, 1062
BseMI GCAATG 2 cut(s) 368, 558
BseMII CTCAG 5 cut(s) 420, 697, 891, 1107, 1190
BseNI ACTGG 1 cut(s) 297
BseRI GAGGAG 3 cut(s) 54, 57, 60
BseSI GKGCMC 1 cut(s) 703
BseXI GCAGC 4 cut(s) 484, 530, 920, 1160
BseYI CCCAGC 1 cut(s) 1144
BshFI GGCC 5 cut(s) 17, 185, 215, 788, 870
BshNI GGYRCC 2 cut(s) 698, 947
BshVI ATCGAT 1 cut(s) 756
BsiHKAI GWGCWC 1 cut(s) 1006
BsiSI CCGG 3 cut(s) 468, 789, 1056
BslFI GGGAC 1 cut(s) 1102
BslI CCNNNNNNNGG 2 cut(s) 229, 1062
BsmAI GTCTC 2 cut(s) 247, 572
BsmFI GGGAC 1 cut(s) 1102
BsmI GAATGC 1 cut(s) 792
BsnI GGCC 5 cut(s) 17, 185, 215, 788, 870
Bso31I GGTCTC 1 cut(s) 572
Bsp1286I GDGCHC 2 cut(s) 703, 1006
Bsp13I TCCGGA 1 cut(s) 1055
Bsp143I GATC 6 cut(s) 232, 274, 595, 724, 753, 764
Bsp1720I GCTNAGC 1 cut(s) 381
BspACI CCGC 1 cut(s) 593
BspANI GGCC 5 cut(s) 17, 185, 215, 788, 870
BspCNI CTCAG 5 cut(s) 421, 696, 892, 1108, 1189
BspDI ATCGAT 1 cut(s) 756
BspEI TCCGGA 1 cut(s) 1055
BspLI GGNNCC 4 cut(s) 295, 597, 700, 949
BspPI GGATC 3 cut(s) 240, 590, 603
BspT107I GGYRCC 2 cut(s) 698, 947
BspTNI GGTCTC 1 cut(s) 572
BsrDI GCAATG 2 cut(s) 368, 558
BsrFI RCCGGY 1 cut(s) 788
BsrI ACTGG 1 cut(s) 297
BssAI RCCGGY 1 cut(s) 788
BssECI CCNNGG 3 cut(s) 210, 228, 840
BssMI GATC 6 cut(s) 232, 274, 595, 724, 753, 764
BssT1I CCWWGG 3 cut(s) 210, 228, 840
Bst2UI CCWGG 2 cut(s) 354, 1033
Bst4CI ACNGT 2 cut(s) 574, 1131
Bst6I CTCTTC 3 cut(s) 60, 194, 250
BstC8I GCNNGC 2 cut(s) 387, 790
BstDEI CTNAG 6 cut(s) 381, 429, 683, 900, 1116, 1176
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 3 cut(s) 101, 367, 1140
BstKTI GATC 6 cut(s) 235, 277, 598, 727, 756, 767
BstMAI GTCTC 2 cut(s) 247, 572
BstMBI GATC 6 cut(s) 232, 274, 595, 724, 753, 764
BstMWI GCNNNNNNNGC 7 cut(s) 23, 386, 419, 452, 617, 798, 905
BstNI CCWGG 2 cut(s) 354, 1033
BstSCI CCNGG 3 cut(s) 352, 467, 1031
BstSFI CTRYAG 1 cut(s) 1170
BstSLI GKGCMC 1 cut(s) 703
BstV1I GCAGC 4 cut(s) 484, 530, 920, 1160
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
Bsu15I ATCGAT 1 cut(s) 756
BsuI GTATCC 1 cut(s) 683
BsuRI GGCC 5 cut(s) 17, 185, 215, 788, 870
BsuTUI ATCGAT 1 cut(s) 756
BtsCI GGATG 3 cut(s) 101, 367, 1140
BtsI GCAGTG 2 cut(s) 12, 351
BtsIMutI CAGTG 5 cut(s) 12, 252, 304, 351, 401
Cac8I GCNNGC 2 cut(s) 387, 790
CaiI CAGNNNCTG 1 cut(s) 485
Cfr10I RCCGGY 1 cut(s) 788
Cfr13I GGNCC 1 cut(s) 184
ClaI ATCGAT 1 cut(s) 756
Csp6I GTAC 2 cut(s) 973, 1167
CspCI CAANNNNNGTGG 2 cut(s) 184, 219
CviAII CATG 1 cut(s) 358
CviQI GTAC 2 cut(s) 973, 1167
DdeI CTNAG 6 cut(s) 381, 429, 683, 900, 1116, 1176
DpnI GATC 6 cut(s) 234, 276, 597, 726, 755, 766
DpnII GATC 6 cut(s) 232, 274, 595, 724, 753, 764
DraI TTTAAA 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 3 cut(s) 60, 194, 250
EarI CTCTTC 3 cut(s) 60, 194, 250
Eco130I CCWWGG 3 cut(s) 210, 228, 840
Eco147I AGGCCT 2 cut(s) 215, 870
Eco31I GGTCTC 1 cut(s) 572
Eco57I CTGAAG 3 cut(s) 12, 276, 425
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoRII CCWGG 2 cut(s) 352, 1031
EcoT14I CCWWGG 3 cut(s) 210, 228, 840
ErhI CCWWGG 3 cut(s) 210, 228, 840
FaeI CATG 1 cut(s) 361
FaiI YATR 4 cut(s) 48, 359, 640, 1099
FaqI GGGAC 1 cut(s) 1102
FatI CATG 1 cut(s) 357
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 4 cut(s) 498, 519, 909, 1149
FokI GGATG 3 cut(s) 88, 374, 1127
Fsp4HI GCNGC 4 cut(s) 498, 519, 909, 1149
FspBI CTAG 3 cut(s) 810, 872, 1016
GluI GCNGC 4 cut(s) 498, 519, 909, 1149
GsaI CCCAGC 1 cut(s) 1148
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 5 cut(s) 17, 185, 215, 788, 870
HapII CCGG 3 cut(s) 468, 789, 1056
Hin1II CATG 1 cut(s) 361
HincII GTYRAC 2 cut(s) 310, 940
HindII GTYRAC 2 cut(s) 310, 940
HindIII AAGCTT 2 cut(s) 330, 1190
HinfI GANTC 5 cut(s) 968, 980, 1078, 1094, 1137
HpaI GTTAAC 2 cut(s) 310, 940
HpaII CCGG 3 cut(s) 468, 789, 1056
HphI GGTGA 6 cut(s) 25, 81, 184, 524, 1119, 1132
Hpy166II GTNNAC 3 cut(s) 310, 490, 940
Hpy188I TCNGA 9 cut(s) 23, 137, 430, 686, 753, 769, 878, 979, 1201
Hpy188III TCNNGA 6 cut(s) 326, 545, 577, 931, 1056, 1134
Hpy8I GTNNAC 3 cut(s) 310, 490, 940
HpyAV CCTTC 6 cut(s) 84, 96, 656, 758, 766, 812
HpyCH4III ACNGT 2 cut(s) 574, 1131
HpyCH4IV ACGT 1 cut(s) 1159
HpyCH4V TGCA 4 cut(s) 344, 422, 500, 518
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 386, 419, 452, 617, 798, 905
HpyF3I CTNAG 6 cut(s) 381, 429, 683, 900, 1116, 1176
HpySE526I ACGT 1 cut(s) 1159
Hsp92II CATG 1 cut(s) 361
Kpn2I TCCGGA 1 cut(s) 1055
KroI GCCGGC 1 cut(s) 788
KroNI GCCGGC 1 cut(s) 790
Ksp22I TGATCA 1 cut(s) 274
KspAI GTTAAC 2 cut(s) 310, 940
Kzo9I GATC 6 cut(s) 232, 274, 595, 724, 753, 764
LmnI GCTCC 2 cut(s) 67, 262
Lsp1109I GCAGC 4 cut(s) 484, 530, 920, 1160
LweI GCATC 2 cut(s) 505, 538
MaeI CTAG 3 cut(s) 810, 872, 1016
MaeII ACGT 1 cut(s) 1159
MaeIII GTNAC 2 cut(s) 31, 1071
MalI GATC 6 cut(s) 234, 276, 597, 726, 755, 766
MboI GATC 6 cut(s) 232, 274, 595, 724, 753, 764
MfeI CAATTG 2 cut(s) 270, 375
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 2 cut(s) 703, 1006
MlsI TGGCCA 1 cut(s) 17
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 2 cut(s) 962, 1087
Mox20I TGGCCA 1 cut(s) 17
MroI TCCGGA 1 cut(s) 1055
MroNI GCCGGC 1 cut(s) 788
MroXI GAANNNNTTC 1 cut(s) 456
MscI TGGCCA 1 cut(s) 17
MseI TTAA 5 cut(s) 309, 338, 678, 939, 1023
MslI CAYNNNNRTG 2 cut(s) 257, 362
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 3 cut(s) 468, 789, 1056
MspR9I CCNGG 3 cut(s) 354, 469, 1033
MunI CAATTG 2 cut(s) 270, 375
Mva1269I GAATGC 1 cut(s) 792
MvaI CCWGG 2 cut(s) 354, 1033
MwoI GCNNNNNNNGC 7 cut(s) 23, 386, 419, 452, 617, 798, 905
NaeI GCCGGC 1 cut(s) 790
NciI CCSGG 1 cut(s) 469
NdeII GATC 6 cut(s) 232, 274, 595, 724, 753, 764
NgoMIV GCCGGC 1 cut(s) 788
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 4 cut(s) 295, 597, 700, 949
NmuCI GTSAC 1 cut(s) 31
OliI CACNNNNGTG 1 cut(s) 257
PceI AGGCCT 2 cut(s) 215, 870
PctI GAATGC 1 cut(s) 792
PdiI GCCGGC 1 cut(s) 790
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 3 cut(s) 980, 1094, 1137
PfoI TCCNGGA 1 cut(s) 467
PkrI GCNGC 4 cut(s) 499, 520, 910, 1150
PleI GAGTC 2 cut(s) 962, 1086
PpsI GAGTC 2 cut(s) 962, 1086
Psp6I CCWGG 2 cut(s) 352, 1031
PspFI CCCAGC 1 cut(s) 1144
PspGI CCWGG 2 cut(s) 352, 1031
PspN4I GGNNCC 4 cut(s) 295, 597, 700, 949
PspPI GGNCC 1 cut(s) 184
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 2 cut(s) 974, 1168
RsaNI GTAC 2 cut(s) 973, 1167
RseI CAYNNNNRTG 2 cut(s) 257, 362
SaqAI TTAA 5 cut(s) 309, 338, 678, 939, 1023
SatI GCNGC 4 cut(s) 498, 519, 909, 1149
Sau3AI GATC 6 cut(s) 232, 274, 595, 724, 753, 764
Sau96I GGNCC 1 cut(s) 184
SchI GAGTC 2 cut(s) 962, 1087
ScrFI CCNGG 3 cut(s) 354, 469, 1033
SduI GDGCHC 2 cut(s) 703, 1006
SfaNI GCATC 2 cut(s) 505, 538
SfcI CTRYAG 1 cut(s) 1170
SmiMI CAYNNNNRTG 2 cut(s) 257, 362
SmlI CTYRAG 1 cut(s) 929
SmoI CTYRAG 1 cut(s) 929
SseBI AGGCCT 2 cut(s) 215, 870
SsiI CCGC 1 cut(s) 593
SspI AATATT 1 cut(s) 630
SspMI CTAG 3 cut(s) 810, 872, 1016
StuI AGGCCT 2 cut(s) 215, 870
StyD4I CCNGG 3 cut(s) 352, 467, 1031
StyI CCWWGG 3 cut(s) 210, 228, 840
TaaI ACNGT 2 cut(s) 574, 1131
TaiI ACGT 1 cut(s) 1162
TaqI TCGA 4 cut(s) 576, 756, 763, 1186
TfiI GAWTC 3 cut(s) 980, 1094, 1137
Tru1I TTAA 5 cut(s) 309, 338, 678, 939, 1023
Tru9I TTAA 5 cut(s) 309, 338, 678, 939, 1023
TscAI CASTG 5 cut(s) 12, 259, 304, 351, 408
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 4 cut(s) 497, 518, 908, 1148
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 3 cut(s) 555, 576, 1086
TspRI CASTG 5 cut(s) 12, 259, 304, 351, 408
XagI CCTNNNNNAGG 1 cut(s) 227
XapI RAATTY 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 3 cut(s) 810, 872, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.