Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013574

Physical Location & Seq

Genomic Coordinates Forward (+)

7321995 .. 7324679

Gene Structure 2685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g12950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCAGTGGAGATGGCCATCAGAGCTTCAGTCACCCCAAGACCTCATCTTCCTCCTCCTTCTTCCTCTCCCTCACCATCATCATCATCACCATCCATACCTAAATTTTCTTTCAAACCCCAATTCAGACCCGTCTCTGTGTCACTCCCAACATCAACTACCCTCTCTCTCTTGGCCCTCTTCACCTCTCCCTTTGAAGCCAAGGCCTTTAGCCTCTCCAAGGATCAAATAGTCTCTTCCCTCACTGAAGTGGAGCAGACAATTGATCAAGTTCAGCAAGTGGGTTCTAGTGTGTTTGACAACACAGGGCGTTTTCTTGAATCTTTTTTAAATGCAGTTAAGCCTGGCATAGATGGGGCATTGCCAATTGCTAAGCAGGCTGGAGAACAAGCCCTGAAGATTGCTTCTCCTGCAATTTCTGAGGTTTCAAAGAAAGCTCAAGAAGCAATTCAAAGTTCCGGGATTGACACAGCGCCTGTTTACAGTGCTGCAAAGACAATAGGTGATGCAGCAGGACAGACCAGCAAAGTAATTCAAGATGCCAAGCCCATTGCTTCATCAACTGTCGAGACCATTTCGTCAGCAGATCCTGTTGTGATTGTTGGAACTGCTGGAGCAATATTCCTCACATATTTCCTTCTTCCCCCAATTTGGTCTGCTATCTCTTTTAACCTCAGAGGATACAAAGGTGCCCTCACTCCTGCTCAAACCCTTGATCTCATTTCGACAAAGAAATACATTCTGATAGATATTCGATCAGAGAAGGACAAGGACAAGGCCGGCATTCCTCGCCTTCCATCTAGTGCCAAAAGCAAATTGATTGCTATTCCCTTGGAAGAACTACCAAGCAAACTGAAAGGCCTAGTCAGAAATGTGAAGAAAGTAGAGGCCGAGATAGCAGCATTGAAAATTGCTTACCTCAAGAAAGTTAACAAGGGCACCAACATTGTCATCTTGGACTCTTACTCTGATTCAGGTAAAACAGTTGCAAGAGCACTAACCAATCTAGGCTTCAAGAACACCTGGATTGTAGCAGACGGGTTCTCCGGAAACAAGGGGTGGCTACAGAGTCGTTTAGGCACAGATTCATACAATTTCTCCTTTGCTGAGGTGATTTCACCATCGAGAATCATCCCAGCTGCGACAAGACGTTTTGGCACCACAGTTCAGTCTGGTCGAAAGCTTCTTTCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010119 GO:0016020 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051716 GO:0055035 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0090333

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

399

Amino Acids

42.33

Weight (kDa)

9.7

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23060 AT5G23060
fragaria_vesca	FvH4_5g12950
malus_domestica	MD06G1208600.v1.1 MD14G1219000.v1.1
prunus_persica	Prupe.5G213600_v2.0.a1
pyrus_communis	pycom14g18150
rosa_chinensis	RchiOBHm_Chr7g0184231
rosa_laevigata	RLG00000004992
rosa_multiflora	Rmu_sc0012221.1_g000009 Rmu_sc0013812.1_g000003
rosa_roxburghii	Rroxscaffold_3G00269790
rosa_rugosa	Rorug06G0463900
rosa_samantha	Rh7AG081700 Rh7BG065600 Rh7CG065900 Rh7DG065600
rosa_wichuraiana	Rw7G005370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	577
AccB1I	GGYRCC	3 cut(s)	689, 938, 1157
AccIII	TCCGGA	1 cut(s)	1046
AclWI	GGATC	2 cut(s)	231, 581
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	3 cut(s)	12, 267, 416
AfiI	CCNNNNNNNGG	2 cut(s)	220, 651
AgsI	TTSAA	8 cut(s)	115, 197, 320, 429, 452, 536, 907, 1015
AjnI	CCWGG	2 cut(s)	343, 1022
AjuI	GAANNNNNNNTTGG	2 cut(s)	995, 1027
AleI	CACNNNNGTG	1 cut(s)	248
AluBI	AGCT	4 cut(s)	26, 437, 1139, 1183
AluI	AGCT	4 cut(s)	26, 437, 1139, 1183
Alw21I	GWGCWC	1 cut(s)	997
Alw26I	GTCTC	3 cut(s)	139, 238, 563
AlwI	GGATC	2 cut(s)	231, 581
AlwNI	CAGNNNCTG	2 cut(s)	476, 590
Aor13HI	TCCGGA	1 cut(s)	1046
AoxI	GGCC	6 cut(s)	15, 174, 204, 777, 859, 888
ApeKI	GCWGC	4 cut(s)	488, 509, 899, 1139
ApoI	RAATTY	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	447
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	175
AsuC2I	CCSGG	1 cut(s)	460
AsuHPI	GGTGA	7 cut(s)	25, 66, 81, 175, 515, 1110, 1123
BaeGI	GKGCMC	2 cut(s)	694, 941
BaeI	ACNNNNGTAYC	2 cut(s)	673, 706
BalI	TGGCCA	1 cut(s)	17
BanI	GGYRCC	3 cut(s)	689, 938, 1157
Bbv12I	GWGCWC	1 cut(s)	997
BbvCI	CCTCAGC	1 cut(s)	1107
BbvI	GCAGC	4 cut(s)	475, 521, 911, 1126
BccI	CCATC	7 cut(s)	7, 26, 85, 100, 347, 805, 1129
BciT130I	CCWGG	2 cut(s)	345, 1024
BciVI	GTATCC	1 cut(s)	674
BclI	TGATCA	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	460
BcoDI	GTCTC	3 cut(s)	139, 238, 563
BfaI	CTAG	4 cut(s)	288, 801, 863, 1007
BfmI	CTRYAG	1 cut(s)	1064
BfoI	RGCGCY	1 cut(s)	476
BfuI	GTATCC	1 cut(s)	674
BisI	GCNGC	4 cut(s)	489, 510, 900, 1140
BlpI	GCTNAGC	1 cut(s)	372
BlsI	GCNGC	4 cut(s)	490, 511, 901, 1141
Bme1390I	CCNGG	3 cut(s)	345, 460, 1024
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	3 cut(s)	691, 940, 1159
BmrFI	CCNGG	3 cut(s)	345, 460, 1024
BmsI	GCATC	2 cut(s)	496, 529
BpmI	CTGGAG	2 cut(s)	402, 633
Bpu10I	CCTNAGC	1 cut(s)	1107
Bpu1102I	GCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	2 cut(s)	423, 905
BpuMI	CCSGG	1 cut(s)	460
BsaBI	GATNNNNATC	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	563
BsaJI	CCNNGG	3 cut(s)	201, 219, 831
BsaWI	WCCGGW	1 cut(s)	1046
BsaXI	ACNNNNNCTCC	4 cut(s)	1028, 1058, 1082, 1112
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 651
Bse118I	RCCGGY	1 cut(s)	779
Bse3DI	GCAATG	2 cut(s)	359, 549
Bse8I	GATNNNNATC	1 cut(s)	17
BseAI	TCCGGA	1 cut(s)	1046
BseBI	CCWGG	2 cut(s)	345, 1024
BseDI	CCNNGG	3 cut(s)	201, 219, 831
BseGI	GGATG	2 cut(s)	92, 1131
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	2 cut(s)	220, 651
BseMI	GCAATG	2 cut(s)	359, 549
BseMII	CTCAG	3 cut(s)	411, 688, 1098
BseRI	GAGGAG	1 cut(s)	45
BseSI	GKGCMC	2 cut(s)	694, 941
BseXI	GCAGC	4 cut(s)	475, 521, 911, 1126
BseYI	CCCAGC	1 cut(s)	1135
BshFI	GGCC	6 cut(s)	17, 176, 206, 779, 861, 890
BshNI	GGYRCC	3 cut(s)	689, 938, 1157
BsiHKAI	GWGCWC	1 cut(s)	997
BsiSI	CCGG	3 cut(s)	459, 780, 1047
BslI	CCNNNNNNNGG	2 cut(s)	220, 651
BsmAI	GTCTC	3 cut(s)	139, 238, 563
BsmBI	CGTCTC	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	783
BsnI	GGCC	6 cut(s)	17, 176, 206, 779, 861, 890
Bso31I	GGTCTC	1 cut(s)	563
Bsp1286I	GDGCHC	3 cut(s)	694, 941, 997
Bsp13I	TCCGGA	1 cut(s)	1046
Bsp143I	GATC	5 cut(s)	223, 265, 586, 715, 755
Bsp1720I	GCTNAGC	1 cut(s)	372
BspANI	GGCC	6 cut(s)	17, 176, 206, 779, 861, 890
BspCNI	CTCAG	3 cut(s)	412, 687, 1099
BspEI	TCCGGA	1 cut(s)	1046
BspLI	GGNNCC	3 cut(s)	691, 940, 1159
BspPI	GGATC	2 cut(s)	231, 581
BspT107I	GGYRCC	3 cut(s)	689, 938, 1157
BspTNI	GGTCTC	1 cut(s)	563
BsrDI	GCAATG	2 cut(s)	359, 549
BsrFI	RCCGGY	1 cut(s)	779
BssAI	RCCGGY	1 cut(s)	779
BssECI	CCNNGG	3 cut(s)	201, 219, 831
BssMI	GATC	5 cut(s)	223, 265, 586, 715, 755
BssT1I	CCWWGG	3 cut(s)	201, 219, 831
Bst2UI	CCWGG	2 cut(s)	345, 1024
Bst4CI	ACNGT	4 cut(s)	485, 565, 985, 1165
Bst6I	CTCTTC	2 cut(s)	185, 241
BstC8I	GCNNGC	2 cut(s)	378, 781
BstDEI	CTNAG	4 cut(s)	372, 420, 674, 1107
BstENI	CCTNNNNNAGG	1 cut(s)	218
BstF5I	GGATG	2 cut(s)	92, 1131
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	5 cut(s)	226, 268, 589, 718, 758
BstMAI	GTCTC	3 cut(s)	139, 238, 563
BstMBI	GATC	5 cut(s)	223, 265, 586, 715, 755
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 377, 410, 443, 789, 896
BstNI	CCWGG	2 cut(s)	345, 1024
BstSCI	CCNGG	3 cut(s)	343, 458, 1022
BstSFI	CTRYAG	1 cut(s)	1064
BstSLI	GKGCMC	2 cut(s)	694, 941
BstV1I	GCAGC	4 cut(s)	475, 521, 911, 1126
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BsuI	GTATCC	1 cut(s)	674
BsuRI	GGCC	6 cut(s)	17, 176, 206, 779, 861, 890
BtsCI	GGATG	2 cut(s)	92, 1131
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	3 cut(s)	12, 243, 490
Cac8I	GCNNGC	2 cut(s)	378, 781
CaiI	CAGNNNCTG	2 cut(s)	476, 590
CfoI	GCGC	1 cut(s)	475
Cfr10I	RCCGGY	1 cut(s)	779
Cfr13I	GGNCC	1 cut(s)	175
DdeI	CTNAG	4 cut(s)	372, 420, 674, 1107
DpnI	GATC	5 cut(s)	225, 267, 588, 717, 757
DpnII	GATC	5 cut(s)	223, 265, 586, 715, 755
DraI	TTTAAA	1 cut(s)	330
DrdI	GACNNNNNNGTC	1 cut(s)	577
DseDI	GACNNNNNNGTC	1 cut(s)	577
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	2 cut(s)	185, 241
EarI	CTCTTC	2 cut(s)	185, 241
Eco130I	CCWWGG	3 cut(s)	201, 219, 831
Eco147I	AGGCCT	2 cut(s)	206, 861
Eco31I	GGTCTC	1 cut(s)	563
Eco57I	CTGAAG	3 cut(s)	12, 267, 416
EcoNI	CCTNNNNNAGG	1 cut(s)	218
EcoRII	CCWGG	2 cut(s)	343, 1022
EcoT14I	CCWWGG	3 cut(s)	201, 219, 831
ErhI	CCWWGG	3 cut(s)	201, 219, 831
Esp3I	CGTCTC	1 cut(s)	139
FaiI	YATR	4 cut(s)	98, 350, 631, 1090
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	4 cut(s)	489, 510, 900, 1140
FokI	GGATG	2 cut(s)	79, 1118
Fsp4HI	GCNGC	4 cut(s)	489, 510, 900, 1140
FspBI	CTAG	4 cut(s)	288, 801, 863, 1007
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	4 cut(s)	489, 510, 900, 1140
GsaI	CCCAGC	1 cut(s)	1139
GsuI	CTGGAG	2 cut(s)	402, 633
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	6 cut(s)	17, 176, 206, 779, 861, 890
HapII	CCGG	3 cut(s)	459, 780, 1047
HhaI	GCGC	1 cut(s)	475
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HincII	GTYRAC	1 cut(s)	931
HindII	GTYRAC	1 cut(s)	931
HindIII	AAGCTT	1 cut(s)	1181
HinfI	GANTC	6 cut(s)	320, 959, 971, 1069, 1085, 1128
HpaI	GTTAAC	1 cut(s)	931
HpaII	CCGG	3 cut(s)	459, 780, 1047
HphI	GGTGA	7 cut(s)	25, 66, 81, 175, 515, 1110, 1123
Hpy166II	GTNNAC	2 cut(s)	481, 931
Hpy188I	TCNGA	9 cut(s)	23, 128, 421, 677, 744, 760, 869, 970, 1192
Hpy188III	TCNNGA	8 cut(s)	317, 440, 536, 568, 922, 1015, 1047, 1125
Hpy8I	GTNNAC	2 cut(s)	481, 931
HpyAV	CCTTC	4 cut(s)	69, 647, 757, 803
HpyCH4III	ACNGT	4 cut(s)	485, 565, 985, 1165
HpyCH4IV	ACGT	1 cut(s)	1150
HpyCH4V	TGCA	5 cut(s)	335, 413, 491, 509, 989
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 377, 410, 443, 789, 896
HpyF3I	CTNAG	4 cut(s)	372, 420, 674, 1107
HpySE526I	ACGT	1 cut(s)	1150
HspAI	GCGC	1 cut(s)	473
Kpn2I	TCCGGA	1 cut(s)	1046
KroI	GCCGGC	1 cut(s)	779
KroNI	GCCGGC	1 cut(s)	781
Ksp22I	TGATCA	1 cut(s)	265
KspAI	GTTAAC	1 cut(s)	931
Kzo9I	GATC	5 cut(s)	223, 265, 586, 715, 755
LmnI	GCTCC	2 cut(s)	253, 614
Lsp1109I	GCAGC	4 cut(s)	475, 521, 911, 1126
LweI	GCATC	2 cut(s)	496, 529
MaeI	CTAG	4 cut(s)	288, 801, 863, 1007
MaeII	ACGT	1 cut(s)	1150
MaeIII	GTNAC	2 cut(s)	31, 141
MalI	GATC	5 cut(s)	225, 267, 588, 717, 757
MboI	GATC	5 cut(s)	223, 265, 586, 715, 755
MboII	GAAGA	8 cut(s)	41, 54, 172, 228, 409, 632, 848, 889
MfeI	CAATTG	2 cut(s)	261, 366
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	3 cut(s)	694, 941, 997
MlsI	TGGCCA	1 cut(s)	17
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	2 cut(s)	953, 1078
MmeI	TCCRAC	1 cut(s)	583
Mox20I	TGGCCA	1 cut(s)	17
MroI	TCCGGA	1 cut(s)	1046
MroNI	GCCGGC	1 cut(s)	779
MroXI	GAANNNNTTC	1 cut(s)	447
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	5 cut(s)	329, 339, 669, 930, 1195
MslI	CAYNNNNRTG	1 cut(s)	248
Msp20I	TGGCCA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	1139
MspI	CCGG	3 cut(s)	459, 780, 1047
MspR9I	CCNGG	3 cut(s)	345, 460, 1024
MunI	CAATTG	2 cut(s)	261, 366
Mva1269I	GAATGC	1 cut(s)	783
MvaI	CCWGG	2 cut(s)	345, 1024
MwoI	GCNNNNNNNGC	6 cut(s)	23, 377, 410, 443, 789, 896
NaeI	GCCGGC	1 cut(s)	781
NciI	CCSGG	1 cut(s)	460
NdeII	GATC	5 cut(s)	223, 265, 586, 715, 755
NgoMIV	GCCGGC	1 cut(s)	779
NlaIV	GGNNCC	3 cut(s)	691, 940, 1159
NmeAIII	GCCGAG	1 cut(s)	916
NmuCI	GTSAC	2 cut(s)	31, 141
OliI	CACNNNNGTG	1 cut(s)	248
PceI	AGGCCT	2 cut(s)	206, 861
PctI	GAATGC	1 cut(s)	783
PdiI	GCCGGC	1 cut(s)	781
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	4 cut(s)	320, 971, 1085, 1128
PfoI	TCCNGGA	1 cut(s)	458
PkrI	GCNGC	4 cut(s)	490, 511, 901, 1141
PleI	GAGTC	2 cut(s)	953, 1077
PpsI	GAGTC	2 cut(s)	953, 1077
Psp6I	CCWGG	2 cut(s)	343, 1022
PspFI	CCCAGC	1 cut(s)	1135
PspGI	CCWGG	2 cut(s)	343, 1022
PspN4I	GGNNCC	3 cut(s)	691, 940, 1159
PspPI	GGNCC	1 cut(s)	175
PstNI	CAGNNNCTG	2 cut(s)	476, 590
PsuI	RGATCY	1 cut(s)	586
PvuII	CAGCTG	1 cut(s)	1139
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	5 cut(s)	329, 339, 669, 930, 1195
SatI	GCNGC	4 cut(s)	489, 510, 900, 1140
Sau3AI	GATC	5 cut(s)	223, 265, 586, 715, 755
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	2 cut(s)	953, 1078
ScrFI	CCNGG	3 cut(s)	345, 460, 1024
SduI	GDGCHC	3 cut(s)	694, 941, 997
SfaNI	GCATC	2 cut(s)	496, 529
SfcI	CTRYAG	1 cut(s)	1064
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	438, 920
SmoI	CTYRAG	2 cut(s)	438, 920
SseBI	AGGCCT	2 cut(s)	206, 861
SspI	AATATT	1 cut(s)	621
SspMI	CTAG	4 cut(s)	288, 801, 863, 1007
StuI	AGGCCT	2 cut(s)	206, 861
StyD4I	CCNGG	3 cut(s)	343, 458, 1022
StyI	CCWWGG	3 cut(s)	201, 219, 831
TaaI	ACNGT	4 cut(s)	485, 565, 985, 1165
TaiI	ACGT	1 cut(s)	1153
TaqI	TCGA	5 cut(s)	567, 725, 754, 1124, 1177
TfiI	GAWTC	4 cut(s)	320, 971, 1085, 1128
Tru1I	TTAA	5 cut(s)	329, 339, 669, 930, 1195
Tru9I	TTAA	5 cut(s)	329, 339, 669, 930, 1195
TscAI	CASTG	3 cut(s)	12, 250, 490
TseFI	GTSAC	2 cut(s)	31, 141
TseI	GCWGC	4 cut(s)	488, 509, 899, 1139
Tsp45I	GTSAC	2 cut(s)	31, 141
TspDTI	ATGAA	2 cut(s)	546, 1077
TspRI	CASTG	3 cut(s)	12, 250, 490
XagI	CCTNNNNNAGG	1 cut(s)	218
XapI	RAATTY	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	4 cut(s)	288, 801, 863, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.