MD14G1219000.v1.1

calcium sensing receptor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
30173379 .. 30175958
2580 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1219000.v1.1.491

Sequence Viewer

Length: 1188 bp
ATGGCGGTGGAGATGGCCATCAGAGCTTCCGCCACCCCAAGACCCTCCCTGCCTCAACCATCTCCGGCCACACCCAAACTTTCTCTCAAGCCACCCAAATTTAGACCCACCTCTGTTTCCCTACCAACATCAACCACAATCTCCCTTTTAGCCCTCTTCACCTCCCCCATTGAAGCCAAAGCTTTCAGCCTCTCCAAGGACCAGATTGTCTCTTCACTCACTGAAGTGGAGCAGACGATTGATCAGATACAGCAAGTGGGTTCGACCGTTTTCGACGGCACGGCACATGTTCTGGAAGCTGTTCTGAATGCAGTGAAGCCCGGCATTGATGTGGCTTTGCCTATTGCGAAACAGGCCGGAGAGCAGGCGCTGAAGATTGCTTCTCCGGCGATTTCCGAGGTTTCGAAGATTGCTCAAGAAGCAATCCAAGGCGCTGGGGTTGACACACAGCCTGTTCTCAGTGCTGCAAAGACGGTAGCTGATGTAGCAGGGGAGACCACCAAAGCAATCGAAGAGGCCAAGCCCATTGCTTCGTCAACTATCAAGACCATCTCATCTGCAGATCCTATTGTGATTGCCGGAACTGCTGGAGCTTTATTCCTCGCGTACCTCCTTCTTCCTCCTGTCTGGTCTGCTCTATCTTTTAGCCTCCGTGGTTACCAAGGTTCGCTTACTCCTGCTCAAACCCTTGATCTCGTATCAACAAAGAATTACCTTTTGATCGATATTCGACCAGAGAAGGACAAGGACAAGGCAGGCATTCCCCGCCTACCATCAAGTGCCAAAAGCAAAATGATTGCCATTCCTTTGGAAGAACTACCAAACAAATTGCGAGGCCTTGTCAGAAACGTGAAGAAAGTAGAGGCAGAGATAGCCGCGCTGAAGATTTCTTACCTCAAGAGAGTTAACAAAGGCTCCAACATCGTGATCCTGGACTCGTACTCGGATTCAGGAAAAATAGTTGCAAGAGCACTAACTAGTCTAGGGTTCAAGAACTGTTGGACAGTAGCAGATGGGTTCTCAGGAAGCAAGGGATGGTTACAGAGCCGTTTAGGCGCAGATTCGTACAATTTATCTTTTGCGGAGGTCCTTTCGCCATCAAGAATCATCCCAGCAGCGGCTGGACGTTTTGGCACAAGCAGCACGTCAGCGCAGTCCGGGCGAAAGCTTCTTCCTGGATCCGACTGA

Protein Analysis

396

Amino Acids

41.44

Weight (kDa)

9.49

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013574)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 206
AccII CGCG 2 cut(s) 605, 878
AciI CCGC 6 cut(s) 5, 30, 766, 876, 1082, 1118
AclWI GGATC 4 cut(s) 557, 922, 1173, 1186
AcoI YGGCCR 2 cut(s) 15, 66
AcsI RAATTY 1 cut(s) 98
AcuI CTGAAG 3 cut(s) 243, 392, 902
AfaI GTAC 3 cut(s) 608, 941, 1067
AfiI CCNNNNNNNGG 2 cut(s) 196, 1117
AflIII ACRYGT 1 cut(s) 286
AgsI TTSAA 2 cut(s) 173, 991
AhlI ACTAGT 1 cut(s) 977
AjiI CACGTC 1 cut(s) 1146
AjnI CCWGG 2 cut(s) 930, 1174
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 6 cut(s) 26, 182, 299, 479, 593, 1168
AluI AGCT 6 cut(s) 26, 182, 299, 479, 593, 1168
Alw21I GWGCWC 1 cut(s) 973
Alw26I GTCTC 2 cut(s) 214, 488
AlwI GGATC 4 cut(s) 557, 922, 1173, 1186
AlwNI CAGNNNCTG 2 cut(s) 370, 1121
AoxI GGCC 5 cut(s) 15, 66, 354, 516, 835
ApeKI GCWGC 3 cut(s) 464, 1115, 1140
ApoI RAATTY 1 cut(s) 98
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 5 cut(s) 370, 434, 880, 1058, 1153
AspS9I GGNCC 2 cut(s) 199, 1087
AsuC2I CCSGG 2 cut(s) 321, 1159
AsuHPI GGTGA 1 cut(s) 151
AsuII TTCGAA 1 cut(s) 404
AvaII GGWCC 2 cut(s) 199, 1087
BalI TGGCCA 1 cut(s) 17
BamHI GGATCC 1 cut(s) 1178
BarI GAAGNNNNNNTAC 2 cut(s) 875, 907
Bbv12I GWGCWC 1 cut(s) 973
BbvI GCAGC 3 cut(s) 451, 1127, 1152
BccI CCATC 8 cut(s) 7, 26, 67, 557, 781, 1007, 1029, 1105
BceAI ACGGC 3 cut(s) 292, 297, 1032
BciT130I CCWGG 2 cut(s) 932, 1176
BclI TGATCA 1 cut(s) 241
BcnI CCSGG 2 cut(s) 321, 1159
BcoDI GTCTC 2 cut(s) 214, 488
BcuI ACTAGT 1 cut(s) 977
BfaI CTAG 2 cut(s) 978, 983
BfmI CTRYAG 1 cut(s) 558
BfoI RGCGCY 2 cut(s) 371, 435
BglI GCCNNNNNGGC 1 cut(s) 1053
BisI GCNGC 5 cut(s) 465, 876, 1116, 1119, 1141
BlsI GCNGC 5 cut(s) 466, 877, 1117, 1120, 1142
Bme1390I CCNGG 4 cut(s) 321, 932, 1159, 1176
Bme18I GGWCC 2 cut(s) 199, 1087
BmgBI CACGTC 1 cut(s) 1146
BmgT120I GGNCC 2 cut(s) 199, 1087
BmiI GGNNCC 2 cut(s) 916, 1180
BmrFI CCNGG 4 cut(s) 321, 932, 1159, 1176
BpmI CTGGAG 1 cut(s) 609
Bpu14I TTCGAA 1 cut(s) 404
BpuEI CTTGAG 3 cut(s) 71, 399, 881
BpuMI CCSGG 2 cut(s) 321, 1159
Bsa29I ATCGAT 1 cut(s) 723
BsaBI GATNNNNATC 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 488
BsaJI CCNNGG 5 cut(s) 195, 396, 427, 652, 661
BsaXI ACNNNNNCTCC 2 cut(s) 899, 929
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 1117
Bse3DI GCAATG 1 cut(s) 525
Bse8I GATNNNNATC 1 cut(s) 17
BseBI CCWGG 2 cut(s) 932, 1176
BseCI ATCGAT 1 cut(s) 723
BseDI CCNNGG 5 cut(s) 195, 396, 427, 652, 661
BseGI GGATG 2 cut(s) 1040, 1107
BseJI GATNNNNATC 1 cut(s) 17
BseLI CCNNNNNNNGG 2 cut(s) 196, 1117
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 2 cut(s) 472, 1035
BseXI GCAGC 3 cut(s) 451, 1127, 1152
BseYI CCCAGC 2 cut(s) 434, 1111
Bsh1236I CGCG 2 cut(s) 605, 878
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 5 cut(s) 17, 68, 356, 518, 837
BshVI ATCGAT 1 cut(s) 723
BsiEI CGRYCG 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 973
BsiSI CCGG 6 cut(s) 65, 321, 357, 386, 579, 1158
BslI CCNNNNNNNGG 2 cut(s) 196, 1117
BsmAI GTCTC 2 cut(s) 214, 488
BsmI GAATGC 2 cut(s) 313, 759
BsnI GGCC 5 cut(s) 17, 68, 356, 518, 837
Bso31I GGTCTC 1 cut(s) 488
Bsp119I TTCGAA 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 973
Bsp143I GATC 6 cut(s) 241, 562, 691, 720, 927, 1178
BspACI CCGC 6 cut(s) 5, 30, 766, 876, 1082, 1118
BspANI GGCC 5 cut(s) 17, 68, 356, 518, 837
BspCNI CTCAG 2 cut(s) 471, 1034
BspDI ATCGAT 1 cut(s) 723
BspFNI CGCG 2 cut(s) 605, 878
BspLI GGNNCC 2 cut(s) 916, 1180
BspMAI CTGCAG 1 cut(s) 562
BspPI GGATC 4 cut(s) 557, 922, 1173, 1186
BspT104I TTCGAA 1 cut(s) 404
BspTNI GGTCTC 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 525
BssECI CCNNGG 5 cut(s) 195, 396, 427, 652, 661
BssMI GATC 6 cut(s) 241, 562, 691, 720, 927, 1178
BssT1I CCWWGG 3 cut(s) 195, 427, 661
Bst2UI CCWGG 2 cut(s) 932, 1176
Bst4CI ACNGT 4 cut(s) 268, 475, 998, 1006
Bst6I CTCTTC 3 cut(s) 161, 217, 507
BstBI TTCGAA 1 cut(s) 404
BstC8I GCNNGC 2 cut(s) 366, 757
BstDEI CTNAG 2 cut(s) 458, 1021
BstDSI CCRYGG 1 cut(s) 652
BstEII GGTNACC 1 cut(s) 656
BstENI CCTNNNNNAGG 1 cut(s) 194
BstF5I GGATG 2 cut(s) 1040, 1107
BstFNI CGCG 2 cut(s) 605, 878
BstH2I RGCGCY 2 cut(s) 371, 435
BstHHI GCGC 5 cut(s) 370, 434, 880, 1058, 1153
BstKTI GATC 6 cut(s) 244, 565, 694, 723, 930, 1181
BstMAI GTCTC 2 cut(s) 214, 488
BstMBI GATC 6 cut(s) 241, 562, 691, 720, 927, 1178
BstMCI CGRYCG 1 cut(s) 267
BstNI CCWGG 2 cut(s) 932, 1176
BstNSI RCATGY 1 cut(s) 290
BstPI GGTNACC 1 cut(s) 656
BstSCI CCNGG 4 cut(s) 319, 930, 1157, 1174
BstSFI CTRYAG 1 cut(s) 558
BstUI CGCG 2 cut(s) 605, 878
BstV1I GCAGC 3 cut(s) 451, 1127, 1152
BstX2I RGATCY 2 cut(s) 562, 1178
BstXI CCANNNNNNTGG 2 cut(s) 434, 808
BstYI RGATCY 2 cut(s) 562, 1178
Bsu15I ATCGAT 1 cut(s) 723
BsuRI GGCC 5 cut(s) 17, 68, 356, 518, 837
BsuTUI ATCGAT 1 cut(s) 723
BtgI CCRYGG 1 cut(s) 652
BtrI CACGTC 1 cut(s) 1146
BtsCI GGATG 2 cut(s) 1040, 1107
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 3 cut(s) 219, 318, 466
Cac8I GCNNGC 2 cut(s) 366, 757
CaiI CAGNNNCTG 2 cut(s) 370, 1121
CfoI GCGC 5 cut(s) 370, 434, 880, 1058, 1153
Cfr13I GGNCC 2 cut(s) 199, 1087
ClaI ATCGAT 1 cut(s) 723
Csp6I GTAC 3 cut(s) 607, 940, 1066
CviAII CATG 1 cut(s) 287
CviQI GTAC 3 cut(s) 607, 940, 1066
DdeI CTNAG 2 cut(s) 458, 1021
DpnI GATC 6 cut(s) 243, 564, 693, 722, 929, 1180
DpnII GATC 6 cut(s) 241, 562, 691, 720, 927, 1178
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
EaeI YGGCCR 2 cut(s) 15, 66
Eam1104I CTCTTC 3 cut(s) 161, 217, 507
EarI CTCTTC 3 cut(s) 161, 217, 507
EciI GGCGGA 1 cut(s) 19
Eco130I CCWWGG 3 cut(s) 195, 427, 661
Eco147I AGGCCT 1 cut(s) 837
Eco31I GGTCTC 1 cut(s) 488
Eco47I GGWCC 2 cut(s) 199, 1087
Eco57I CTGAAG 3 cut(s) 243, 392, 902
Eco91I GGTNACC 1 cut(s) 656
EcoNI CCTNNNNNAGG 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 1087
EcoO65I GGTNACC 1 cut(s) 656
EcoRII CCWGG 2 cut(s) 930, 1174
EcoT14I CCWWGG 3 cut(s) 195, 427, 661
ErhI CCWWGG 3 cut(s) 195, 427, 661
FaeI CATG 1 cut(s) 290
FaiI YATR 1 cut(s) 288
FalI AAGNNNNNCTT 2 cut(s) 654, 686
FatI CATG 1 cut(s) 286
FauI CCCGC 1 cut(s) 773
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 5 cut(s) 465, 876, 1116, 1119, 1141
FokI GGATG 2 cut(s) 1047, 1094
Fsp4HI GCNGC 5 cut(s) 465, 876, 1116, 1119, 1141
FspBI CTAG 2 cut(s) 978, 983
GlaI GCGC 5 cut(s) 369, 433, 879, 1057, 1152
GluI GCNGC 5 cut(s) 465, 876, 1116, 1119, 1141
GsaI CCCAGC 2 cut(s) 438, 1115
GsuI CTGGAG 1 cut(s) 609
HaeII RGCGCY 2 cut(s) 371, 435
HaeIII GGCC 5 cut(s) 17, 68, 356, 518, 837
HapII CCGG 6 cut(s) 65, 321, 357, 386, 579, 1158
HhaI GCGC 5 cut(s) 370, 434, 880, 1058, 1153
Hin1II CATG 1 cut(s) 290
Hin6I GCGC 5 cut(s) 368, 432, 878, 1056, 1151
HinP1I GCGC 5 cut(s) 368, 432, 878, 1056, 1151
HincII GTYRAC 3 cut(s) 442, 537, 907
HindII GTYRAC 3 cut(s) 442, 537, 907
HindIII AAGCTT 2 cut(s) 180, 1166
HinfI GANTC 4 cut(s) 935, 947, 1061, 1104
HpaI GTTAAC 1 cut(s) 907
HpaII CCGG 6 cut(s) 65, 321, 357, 386, 579, 1158
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 3 cut(s) 442, 537, 907
Hpy188I TCNGA 7 cut(s) 23, 246, 306, 397, 845, 946, 1183
Hpy188III TCNNGA 9 cut(s) 293, 416, 544, 898, 925, 951, 991, 1023, 1101
Hpy8I GTNNAC 3 cut(s) 442, 537, 907
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 2 cut(s) 623, 733
HpyCH4III ACNGT 4 cut(s) 268, 475, 998, 1006
HpyCH4IV ACGT 3 cut(s) 849, 1126, 1145
HpyCH4V TGCA 4 cut(s) 311, 467, 560, 965
HpyF3I CTNAG 2 cut(s) 458, 1021
HpySE526I ACGT 3 cut(s) 849, 1126, 1145
Hsp92II CATG 1 cut(s) 290
HspAI GCGC 5 cut(s) 368, 432, 878, 1056, 1151
Ksp22I TGATCA 1 cut(s) 241
KspAI GTTAAC 1 cut(s) 907
Kzo9I GATC 6 cut(s) 241, 562, 691, 720, 927, 1178
LmnI GCTCC 3 cut(s) 229, 590, 920
Lsp1109I GCAGC 3 cut(s) 451, 1127, 1152
MaeI CTAG 2 cut(s) 978, 983
MaeII ACGT 3 cut(s) 849, 1126, 1145
MaeIII GTNAC 2 cut(s) 656, 1038
MalI GATC 6 cut(s) 243, 564, 693, 722, 929, 1180
MboI GATC 6 cut(s) 241, 562, 691, 720, 927, 1178
MflI RGATCY 2 cut(s) 562, 1178
MhlI GDGCHC 1 cut(s) 973
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 4 cut(s) 98, 709, 827, 1069
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 929
MmeI TCCRAC 2 cut(s) 942, 980
Mox20I TGGCCA 1 cut(s) 17
MroXI GAANNNNTTC 1 cut(s) 300
MscI TGGCCA 1 cut(s) 17
MseI TTAA 1 cut(s) 906
MslI CAYNNNNRTG 2 cut(s) 224, 329
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 1118
MspI CCGG 6 cut(s) 65, 321, 357, 386, 579, 1158
MspR9I CCNGG 4 cut(s) 321, 932, 1159, 1176
Mva1269I GAATGC 2 cut(s) 313, 759
MvaI CCWGG 2 cut(s) 932, 1176
MvnI CGCG 2 cut(s) 605, 878
NciI CCSGG 2 cut(s) 321, 1159
NdeII GATC 6 cut(s) 241, 562, 691, 720, 927, 1178
NlaIII CATG 1 cut(s) 290
NlaIV GGNNCC 2 cut(s) 916, 1180
NspI RCATGY 1 cut(s) 290
NspV TTCGAA 1 cut(s) 404
OliI CACNNNNGTG 1 cut(s) 224
PceI AGGCCT 1 cut(s) 837
PciI ACATGT 1 cut(s) 286
PctI GAATGC 2 cut(s) 313, 759
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 3 cut(s) 947, 1061, 1104
PfoI TCCNGGA 2 cut(s) 930, 1174
PkrI GCNGC 5 cut(s) 466, 877, 1117, 1120, 1142
PleI GAGTC 1 cut(s) 929
PpsI GAGTC 1 cut(s) 929
PpuMI RGGWCCY 1 cut(s) 1087
PscI ACATGT 1 cut(s) 286
Psp5II RGGWCCY 1 cut(s) 1087
Psp6I CCWGG 2 cut(s) 930, 1174
PspEI GGTNACC 1 cut(s) 656
PspFI CCCAGC 2 cut(s) 434, 1111
PspGI CCWGG 2 cut(s) 930, 1174
PspN4I GGNNCC 2 cut(s) 916, 1180
PspPI GGNCC 2 cut(s) 199, 1087
PspPPI RGGWCCY 1 cut(s) 1087
PstI CTGCAG 1 cut(s) 562
PstNI CAGNNNCTG 2 cut(s) 370, 1121
PsuI RGATCY 2 cut(s) 562, 1178
RsaI GTAC 3 cut(s) 608, 941, 1067
RsaNI GTAC 3 cut(s) 607, 940, 1066
RseI CAYNNNNRTG 2 cut(s) 224, 329
SaqAI TTAA 1 cut(s) 906
SatI GCNGC 5 cut(s) 465, 876, 1116, 1119, 1141
Sau3AI GATC 6 cut(s) 241, 562, 691, 720, 927, 1178
Sau96I GGNCC 2 cut(s) 199, 1087
SchI GAGTC 1 cut(s) 929
ScrFI CCNGG 4 cut(s) 321, 932, 1159, 1176
SduI GDGCHC 1 cut(s) 973
SfcI CTRYAG 1 cut(s) 558
SfuI TTCGAA 1 cut(s) 404
SinI GGWCC 2 cut(s) 199, 1087
SmiMI CAYNNNNRTG 2 cut(s) 224, 329
SmlI CTYRAG 3 cut(s) 86, 414, 896
SmoI CTYRAG 3 cut(s) 86, 414, 896
SpeI ACTAGT 1 cut(s) 977
Sse9I AATT 4 cut(s) 98, 709, 827, 1069
SseBI AGGCCT 1 cut(s) 837
SsiI CCGC 6 cut(s) 5, 30, 766, 876, 1082, 1118
SspMI CTAG 2 cut(s) 978, 983
StuI AGGCCT 1 cut(s) 837
StyD4I CCNGG 4 cut(s) 319, 930, 1157, 1174
StyI CCWWGG 3 cut(s) 195, 427, 661
TaaI ACNGT 4 cut(s) 268, 475, 998, 1006
TaiI ACGT 3 cut(s) 852, 1129, 1148
TaqI TCGA 6 cut(s) 263, 273, 404, 510, 723, 730
TasI AATT 4 cut(s) 98, 709, 827, 1069
TauI GCSGC 2 cut(s) 878, 1121
TfiI GAWTC 3 cut(s) 947, 1061, 1104
Tru1I TTAA 1 cut(s) 906
Tru9I TTAA 1 cut(s) 906
TscAI CASTG 3 cut(s) 226, 318, 466
TseI GCWGC 3 cut(s) 464, 1115, 1140
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 3 cut(s) 226, 318, 466
VpaK11BI GGWCC 2 cut(s) 199, 1087
XagI CCTNNNNNAGG 1 cut(s) 194
XapI RAATTY 1 cut(s) 98
XceI RCATGY 1 cut(s) 290
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 2 cut(s) 978, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.