Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013574

Physical Location & Seq

Genomic Coordinates Forward (+)

64240567 .. 64243255

Gene Structure 2689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004992

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCAGTGGAGATGGCCATCAGAGCTTCGGTCACCCCAAGACCTCATATTTCTCTTCCTCCTCCTCCTTCTTCTTCTCCTCCTTCACCATCATCATCATCATCCACACCTAAATTTTCTTTCAAACCCCGATTCAGACCCATCTCCGTATCACTCCCAACATCAACCACCCTCTCTCTCTTGGCCCTCTTCACCTCTCCCTTTGAAGCCAAGGCCTTTAGCCTCTCCAAGGATCAAATAGTCTCTTCCCTCACTGAAGTGGAGCAGACAATTGATCAAGTTCAGCAAGTGGGTTCCAGTGTTTTTGTTAACACAGAGCGTTTTCTTGAAGCTTTTTTAAATGCAGTGAAGCCTGGCGTAGATGTGGCATTGCCAATTGCTAAGCAGGCTGGAGAACAAGCACTGAAGATAGCTTCTCCTGCAATTTCTGAGGTTTCAAAGAAAGCCCAAGAAGCAATTCAAAGTTCCGGGATTGACACAGAGCCTGTTTACAGTGCTGCAAAGACGATAGGTGATGCAGCAGGACAGACCACCAAAGTAATTCAAGATGCCCAGCCCATTGCTTCATCAACTGTCGAGACCATTTCATCAGCGGATCCTGTTGTGATTGCTGGAACTGCTGGAGTAATATTCCTCACATACTTCCTTCTTCCTCCAATTTGGTCTGCTATCTCTTTTAACCTCAGAGGATACAAAGGTGCCCTCACTCCTGCTCAAACCCTTGATCTCGTTTCTACGAAGAACCACCTTCTAATCGATATTCGATCAGAGATGGAAAAGGACAAGGCTGGCATTCCTCGCCTTCCATCTAGTGCCAAAAGCAAATTGATTGCTATTCCCTTGGAAGAACTACCAAGCAAATTGAAAGGCCTAGTCAGAAATGTGAAGAAAGTAGAGGCTGAGATAGCAGCTTTGAAAATTGCTTATCTCAAGAGAGTTAACAAAGGCACCAACATCGTCATCTTGGACTCGTACTCTGATTCAGGTAAAATAGTAGCAAGAGCACTAACTAATCTAGGCTTTAAGAATACCTGGATTGTAGCAGACGGGTTCTCCGGAAACAAAGGGTGGTTACAGAGTCGTTTAGGGACAGATTCATACAATTTCTCCTTTGCTGAGGTGATTTCACCGTCAAGAATCATCCCAGCAGCTACCAGACGTTTTGGTACTACAGCTCAGTCTGGTCGAAAGCTTCTTTCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010119 GO:0016020 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051716 GO:0055035 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0090333

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

402

Amino Acids

42.78

Weight (kDa)

9.62

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23060 AT5G23060
fragaria_vesca	FvH4_5g12950
malus_domestica	MD06G1208600.v1.1 MD14G1219000.v1.1
prunus_persica	Prupe.5G213600_v2.0.a1
pyrus_communis	pycom14g18150
rosa_chinensis	RchiOBHm_Chr7g0184231
rosa_laevigata	RLG00000004992
rosa_multiflora	Rmu_sc0012221.1_g000009 Rmu_sc0013812.1_g000003
rosa_roxburghii	Rroxscaffold_3G00269790
rosa_rugosa	Rorug06G0463900
rosa_samantha	Rh7AG081700 Rh7BG065600 Rh7CG065900 Rh7DG065600
rosa_wichuraiana	Rw7G005370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	698, 947
AccIII	TCCGGA	1 cut(s)	1055
AciI	CCGC	1 cut(s)	593
AclWI	GGATC	3 cut(s)	240, 590, 603
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	113
AcuI	CTGAAG	2 cut(s)	276, 425
AfaI	GTAC	2 cut(s)	974, 1168
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	8 cut(s)	124, 206, 329, 438, 461, 545, 865, 916
AjnI	CCWGG	2 cut(s)	352, 1031
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	7 cut(s)	26, 332, 413, 911, 1151, 1175, 1192
AluI	AGCT	7 cut(s)	26, 332, 413, 911, 1151, 1175, 1192
Alw21I	GWGCWC	1 cut(s)	1006
Alw26I	GTCTC	2 cut(s)	247, 572
AlwI	GGATC	3 cut(s)	240, 590, 603
AlwNI	CAGNNNCTG	1 cut(s)	485
Aor13HI	TCCGGA	1 cut(s)	1055
AoxI	GGCC	4 cut(s)	15, 183, 213, 868
ApeKI	GCWGC	4 cut(s)	497, 518, 908, 1148
ApoI	RAATTY	1 cut(s)	113
Asp700I	GAANNNNTTC	1 cut(s)	456
AspS9I	GGNCC	1 cut(s)	184
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	6 cut(s)	25, 78, 184, 524, 1119, 1132
BaeGI	GKGCMC	1 cut(s)	703
BaeI	ACNNNNGTAYC	2 cut(s)	682, 715
BalI	TGGCCA	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	595
BanI	GGYRCC	2 cut(s)	698, 947
Bbv12I	GWGCWC	1 cut(s)	1006
BbvCI	CCTCAGC	1 cut(s)	1116
BbvI	GCAGC	4 cut(s)	484, 530, 920, 1160
BccI	CCATC	6 cut(s)	7, 26, 97, 149, 766, 814
BcgI	CGANNNNNNTGC	2 cut(s)	937, 971
BciT130I	CCWGG	2 cut(s)	354, 1033
BciVI	GTATCC	1 cut(s)	683
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	469
BcoDI	GTCTC	2 cut(s)	247, 572
BfaI	CTAG	3 cut(s)	810, 872, 1016
BfmI	CTRYAG	1 cut(s)	1170
BfuI	GTATCC	1 cut(s)	683
BisI	GCNGC	4 cut(s)	498, 519, 909, 1149
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	4 cut(s)	499, 520, 910, 1150
Bme1390I	CCNGG	3 cut(s)	354, 469, 1033
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	4 cut(s)	295, 597, 700, 949
BmrFI	CCNGG	3 cut(s)	354, 469, 1033
BmsI	GCATC	2 cut(s)	505, 538
BpmI	CTGGAG	2 cut(s)	411, 642
Bpu10I	CCTNAGC	1 cut(s)	1116
Bpu1102I	GCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	914
BpuMI	CCSGG	1 cut(s)	469
Bsa29I	ATCGAT	1 cut(s)	756
BsaBI	GATNNNNATC	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	3 cut(s)	210, 228, 840
BsaWI	WCCGGW	1 cut(s)	1055
BsaXI	ACNNNNNCTCC	4 cut(s)	1037, 1067, 1091, 1121
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	297
Bse3DI	GCAATG	2 cut(s)	368, 558
Bse8I	GATNNNNATC	1 cut(s)	17
BseAI	TCCGGA	1 cut(s)	1055
BseBI	CCWGG	2 cut(s)	354, 1033
BseCI	ATCGAT	1 cut(s)	756
BseDI	CCNNGG	3 cut(s)	210, 228, 840
BseGI	GGATG	2 cut(s)	101, 1140
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	2 cut(s)	368, 558
BseMII	CTCAG	5 cut(s)	420, 697, 891, 1107, 1190
BseNI	ACTGG	1 cut(s)	297
BseRI	GAGGAG	3 cut(s)	51, 54, 69
BseSI	GKGCMC	1 cut(s)	703
BseXI	GCAGC	4 cut(s)	484, 530, 920, 1160
BseYI	CCCAGC	2 cut(s)	552, 1144
BshFI	GGCC	4 cut(s)	17, 185, 215, 870
BshNI	GGYRCC	2 cut(s)	698, 947
BshVI	ATCGAT	1 cut(s)	756
BsiHKAI	GWGCWC	1 cut(s)	1006
BsiSI	CCGG	2 cut(s)	468, 1056
BslFI	GGGAC	1 cut(s)	1102
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	2 cut(s)	247, 572
BsmFI	GGGAC	1 cut(s)	1102
BsmI	GAATGC	1 cut(s)	792
BsnI	GGCC	4 cut(s)	17, 185, 215, 870
Bso31I	GGTCTC	1 cut(s)	572
Bsp1286I	GDGCHC	2 cut(s)	703, 1006
Bsp13I	TCCGGA	1 cut(s)	1055
Bsp143I	GATC	5 cut(s)	232, 274, 595, 724, 764
Bsp1720I	GCTNAGC	1 cut(s)	381
BspACI	CCGC	1 cut(s)	593
BspANI	GGCC	4 cut(s)	17, 185, 215, 870
BspCNI	CTCAG	5 cut(s)	421, 696, 892, 1108, 1189
BspDI	ATCGAT	1 cut(s)	756
BspEI	TCCGGA	1 cut(s)	1055
BspLI	GGNNCC	4 cut(s)	295, 597, 700, 949
BspPI	GGATC	3 cut(s)	240, 590, 603
BspT107I	GGYRCC	2 cut(s)	698, 947
BspTNI	GGTCTC	1 cut(s)	572
BsrDI	GCAATG	2 cut(s)	368, 558
BsrI	ACTGG	1 cut(s)	297
BssECI	CCNNGG	3 cut(s)	210, 228, 840
BssMI	GATC	5 cut(s)	232, 274, 595, 724, 764
BssT1I	CCWWGG	3 cut(s)	210, 228, 840
Bst2UI	CCWGG	2 cut(s)	354, 1033
Bst4CI	ACNGT	3 cut(s)	494, 574, 1131
Bst6I	CTCTTC	3 cut(s)	60, 194, 250
BstC8I	GCNNGC	2 cut(s)	387, 790
BstDEI	CTNAG	6 cut(s)	381, 429, 683, 900, 1116, 1176
BstEII	GGTNACC	1 cut(s)	31
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	2 cut(s)	101, 1140
BstKTI	GATC	5 cut(s)	235, 277, 598, 727, 767
BstMAI	GTCTC	2 cut(s)	247, 572
BstMBI	GATC	5 cut(s)	232, 274, 595, 724, 764
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 386, 419, 452, 617, 798, 905
BstNI	CCWGG	2 cut(s)	354, 1033
BstPI	GGTNACC	1 cut(s)	31
BstSCI	CCNGG	3 cut(s)	352, 467, 1031
BstSFI	CTRYAG	1 cut(s)	1170
BstSLI	GKGCMC	1 cut(s)	703
BstV1I	GCAGC	4 cut(s)	484, 530, 920, 1160
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
Bsu15I	ATCGAT	1 cut(s)	756
BsuI	GTATCC	1 cut(s)	683
BsuRI	GGCC	4 cut(s)	17, 185, 215, 870
BsuTUI	ATCGAT	1 cut(s)	756
BtsCI	GGATG	2 cut(s)	101, 1140
BtsI	GCAGTG	2 cut(s)	12, 351
BtsIMutI	CAGTG	6 cut(s)	12, 252, 304, 351, 401, 499
Cac8I	GCNNGC	2 cut(s)	387, 790
CaiI	CAGNNNCTG	1 cut(s)	485
Cfr13I	GGNCC	1 cut(s)	184
ClaI	ATCGAT	1 cut(s)	756
Csp6I	GTAC	2 cut(s)	973, 1167
CviQI	GTAC	2 cut(s)	973, 1167
DdeI	CTNAG	6 cut(s)	381, 429, 683, 900, 1116, 1176
DpnI	GATC	5 cut(s)	234, 276, 597, 726, 766
DpnII	GATC	5 cut(s)	232, 274, 595, 724, 764
DraI	TTTAAA	1 cut(s)	339
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	3 cut(s)	60, 194, 250
EarI	CTCTTC	3 cut(s)	60, 194, 250
Eco130I	CCWWGG	3 cut(s)	210, 228, 840
Eco147I	AGGCCT	2 cut(s)	215, 870
Eco31I	GGTCTC	1 cut(s)	572
Eco57I	CTGAAG	2 cut(s)	276, 425
Eco91I	GGTNACC	1 cut(s)	31
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoO65I	GGTNACC	1 cut(s)	31
EcoRII	CCWGG	2 cut(s)	352, 1031
EcoT14I	CCWWGG	3 cut(s)	210, 228, 840
ErhI	CCWWGG	3 cut(s)	210, 228, 840
FaiI	YATR	3 cut(s)	48, 640, 1099
FaqI	GGGAC	1 cut(s)	1102
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	4 cut(s)	498, 519, 909, 1149
FokI	GGATG	2 cut(s)	88, 1127
Fsp4HI	GCNGC	4 cut(s)	498, 519, 909, 1149
FspBI	CTAG	3 cut(s)	810, 872, 1016
GluI	GCNGC	4 cut(s)	498, 519, 909, 1149
GsaI	CCCAGC	2 cut(s)	556, 1148
GsuI	CTGGAG	2 cut(s)	411, 642
HaeIII	GGCC	4 cut(s)	17, 185, 215, 870
HapII	CCGG	2 cut(s)	468, 1056
HincII	GTYRAC	2 cut(s)	310, 940
HindII	GTYRAC	2 cut(s)	310, 940
HindIII	AAGCTT	2 cut(s)	330, 1190
HinfI	GANTC	6 cut(s)	132, 968, 980, 1078, 1094, 1137
HpaI	GTTAAC	2 cut(s)	310, 940
HpaII	CCGG	2 cut(s)	468, 1056
HphI	GGTGA	6 cut(s)	25, 78, 184, 524, 1119, 1132
Hpy166II	GTNNAC	3 cut(s)	310, 490, 940
Hpy188I	TCNGA	8 cut(s)	23, 137, 430, 686, 769, 878, 979, 1201
Hpy188III	TCNNGA	6 cut(s)	326, 545, 577, 931, 1056, 1134
Hpy8I	GTNNAC	3 cut(s)	310, 490, 940
HpyAV	CCTTC	5 cut(s)	78, 93, 656, 758, 812
HpyCH4III	ACNGT	3 cut(s)	494, 574, 1131
HpyCH4IV	ACGT	1 cut(s)	1159
HpyCH4V	TGCA	4 cut(s)	344, 422, 500, 518
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 386, 419, 452, 617, 798, 905
HpyF3I	CTNAG	6 cut(s)	381, 429, 683, 900, 1116, 1176
HpySE526I	ACGT	1 cut(s)	1159
Kpn2I	TCCGGA	1 cut(s)	1055
Ksp22I	TGATCA	1 cut(s)	274
KspAI	GTTAAC	2 cut(s)	310, 940
Kzo9I	GATC	5 cut(s)	232, 274, 595, 724, 764
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	4 cut(s)	484, 530, 920, 1160
LweI	GCATC	2 cut(s)	505, 538
MaeI	CTAG	3 cut(s)	810, 872, 1016
MaeII	ACGT	1 cut(s)	1159
MaeIII	GTNAC	2 cut(s)	31, 1071
MalI	GATC	5 cut(s)	234, 276, 597, 726, 766
MboI	GATC	5 cut(s)	232, 274, 595, 724, 764
MfeI	CAATTG	2 cut(s)	270, 375
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	2 cut(s)	703, 1006
MlsI	TGGCCA	1 cut(s)	17
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	2 cut(s)	962, 1087
Mox20I	TGGCCA	1 cut(s)	17
MroI	TCCGGA	1 cut(s)	1055
MroXI	GAANNNNTTC	1 cut(s)	456
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	5 cut(s)	309, 338, 678, 939, 1023
MslI	CAYNNNNRTG	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	2 cut(s)	468, 1056
MspR9I	CCNGG	3 cut(s)	354, 469, 1033
MunI	CAATTG	2 cut(s)	270, 375
Mva1269I	GAATGC	1 cut(s)	792
MvaI	CCWGG	2 cut(s)	354, 1033
MwoI	GCNNNNNNNGC	7 cut(s)	23, 386, 419, 452, 617, 798, 905
NciI	CCSGG	1 cut(s)	469
NdeII	GATC	5 cut(s)	232, 274, 595, 724, 764
NlaIV	GGNNCC	4 cut(s)	295, 597, 700, 949
NmuCI	GTSAC	1 cut(s)	31
OliI	CACNNNNGTG	1 cut(s)	257
PceI	AGGCCT	2 cut(s)	215, 870
PctI	GAATGC	1 cut(s)	792
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	4 cut(s)	132, 980, 1094, 1137
PfoI	TCCNGGA	1 cut(s)	467
PkrI	GCNGC	4 cut(s)	499, 520, 910, 1150
PleI	GAGTC	2 cut(s)	962, 1086
PpsI	GAGTC	2 cut(s)	962, 1086
Psp6I	CCWGG	2 cut(s)	352, 1031
PspEI	GGTNACC	1 cut(s)	31
PspFI	CCCAGC	2 cut(s)	552, 1144
PspGI	CCWGG	2 cut(s)	352, 1031
PspN4I	GGNNCC	4 cut(s)	295, 597, 700, 949
PspPI	GGNCC	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	595
RsaI	GTAC	2 cut(s)	974, 1168
RsaNI	GTAC	2 cut(s)	973, 1167
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	5 cut(s)	309, 338, 678, 939, 1023
SatI	GCNGC	4 cut(s)	498, 519, 909, 1149
Sau3AI	GATC	5 cut(s)	232, 274, 595, 724, 764
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	2 cut(s)	962, 1087
ScrFI	CCNGG	3 cut(s)	354, 469, 1033
SduI	GDGCHC	2 cut(s)	703, 1006
SfaNI	GCATC	2 cut(s)	505, 538
SfcI	CTRYAG	1 cut(s)	1170
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	929
SmoI	CTYRAG	1 cut(s)	929
SseBI	AGGCCT	2 cut(s)	215, 870
SsiI	CCGC	1 cut(s)	593
SspI	AATATT	1 cut(s)	630
SspMI	CTAG	3 cut(s)	810, 872, 1016
StuI	AGGCCT	2 cut(s)	215, 870
StyD4I	CCNGG	3 cut(s)	352, 467, 1031
StyI	CCWWGG	3 cut(s)	210, 228, 840
TaaI	ACNGT	3 cut(s)	494, 574, 1131
TaiI	ACGT	1 cut(s)	1162
TaqI	TCGA	4 cut(s)	576, 756, 763, 1186
TaqII	GACCGA	1 cut(s)	19
TfiI	GAWTC	4 cut(s)	132, 980, 1094, 1137
Tru1I	TTAA	5 cut(s)	309, 338, 678, 939, 1023
Tru9I	TTAA	5 cut(s)	309, 338, 678, 939, 1023
TscAI	CASTG	6 cut(s)	12, 259, 304, 351, 408, 499
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	4 cut(s)	497, 518, 908, 1148
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	555, 576, 1086
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	6 cut(s)	12, 259, 304, 351, 408, 499
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	3 cut(s)	810, 872, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.