AT5G23340

F-box LRR-repeat protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015952
Physical Location & Seq
Forward (+)
7856039 .. 7858319
2281 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G23340.1

Sequence Viewer

Length: 1218 bp
ATGTCATCGGTCTGTGTTAACGAAGCATTAACCGATGACGAGCTGAGATGGGTATTGTCGAGACTAGACAGTGATAAAGATAAGGAAGTGTTTGGTTTGGTCTGCAAGAGGTGGCTAAATCTGCAGAGTACCGACCGGAAGAAGCTAGCGGCACGTGCTGGTCCACATATGCTCCGCCGTCTCGCTTCTAGGTTCACTCAAATCGTCGAATTGGATTTGTCTCAGTCAATTTCTAGGTCCTTTTATCCAGGAGTTACTGATTCTGACCTCGCTGTTATCTCTGAGGGATTCAAGTTTCTCAGAGTTCTTAATCTTCACAACTGTAAAGGTATTACAGATACTGGATTGGCCTCAATTGGAAGGTGTCTTTCTTTACTGCAGTTTTTGGATGTATCATATTGTAGAAAGCTCTCAGATAAAGGATTATCAGCTGTTGCAGAAGGCTGCCATGATCTAAGGGCATTGCATTTAGCGGGTTGTCGTTTCATCACCGATGAATCGTTGAAATCACTCTCTGAGAGATGCCGTGATCTCGAAGCTCTGGGGCTACAAGGCTGCACCAATATCACTGATTCAGGTCTTGCTGATCTTGTGAAGGGATGCAGAAAGATAAAATCTTTAGACATTAATAAATGTAGCAATGTTGGAGATGCTGGAGTTTCGAGCGTGGCGAAAGCTTGTGCATCTTCCCTCAAGACACTCAAATTGCTGGACTGTTACAAAGTCGGGAACGAATCTATATCGTCGCTGGCGCAGTTTTGCAAGAATCTGGAAACTCTGATAATCGGTGGATGCAGAGATATCTCTGACGAATCTATCATGTTACTGGCAGATTCCTGTAAAGACAGTCTCAAGAACTTGAGGATGGATTGGTGCTTGAATATATCTGACTCTTCCCTTAGCTGCATTCTCAAGCAGTGCAAGAACTTGGAGGCTCTAGATATTGGTTGCTGTGAAGAGGTCACAGACACTGCTTTCCGGGATTTAGGGAGCGACGATGTTTTGGGATTGAAGGTTTTAAAGGTTAGCAACTGCACGAAGATCACAGTAACAGGGATAGGCAAGCTTTTGGACAAATGCAGTTCCCTGGAGTATATAGATGTAAGGTCTCTTCCACATGTGACAGAAGTGAGATGCAGTGAAGCTGGTTTGGAGTTCCCAAAATGTTGTAAAGTTAACTTTTCAGGTAGTTTAACCGAGCCAGATGTTCTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

405

Amino Acids

44.23

Weight (kDa)

6.27

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 97 - 171 7.4e-11 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 171 - 281 7.1e-12 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23340
fragaria_vesca FvH4_4g37160
prunus_persica Prupe.1G349400_v2.0.a1
pyrus_communis pycom13g00250
rosa_chinensis RchiOBHm_Chr4g0446961
rosa_laevigata RLG00000005617
rosa_multiflora Rmu_sc0001753.1_g000005 Rmu_sc0011539.1_g000001
rosa_roxburghii Rroxscaffold_5G00387290
rosa_rugosa Rorug04G0376500
rosa_samantha Rh4AG438000 Rh4BG446900 Rh4CG464200 Rh4DG445700
rosa_wichuraiana Rw4G037460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 149, 175, 473
AcvI CACGTG 1 cut(s) 155
AfaI GTAC 1 cut(s) 130
AflIII ACRYGT 1 cut(s) 1117
AgsI TTSAA 4 cut(s) 292, 505, 880, 1012
AjnI CCWGG 2 cut(s) 247, 1086
AluBI AGCT 9 cut(s) 43, 145, 409, 431, 539, 677, 903, 1066, 1145
AluI AGCT 9 cut(s) 43, 145, 409, 431, 539, 677, 903, 1066, 1145
Alw26I GTCTC 5 cut(s) 55, 185, 225, 854, 1113
AlwNI CAGNNNCTG 2 cut(s) 341, 971
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 3 cut(s) 444, 555, 903
AseI ATTAAT 1 cut(s) 627
AspLEI GCGC 1 cut(s) 754
AspS9I GGNCC 2 cut(s) 161, 237
AsuC2I CCSGG 1 cut(s) 980
AsuHPI GGTGA 1 cut(s) 481
AsuNHI GCTAGC 1 cut(s) 145
AvaII GGWCC 2 cut(s) 161, 237
BarI GAAGNNNNNNTAC 2 cut(s) 1095, 1127
BbrPI CACGTG 1 cut(s) 155
BbvI GCAGC 3 cut(s) 431, 542, 890
BccI CCATC 2 cut(s) 42, 859
BceAI ACGGC 2 cut(s) 162, 510
BciT130I CCWGG 2 cut(s) 249, 1088
BcnI CCSGG 1 cut(s) 980
BcoDI GTCTC 5 cut(s) 55, 185, 225, 854, 1113
BfaI CTAG 5 cut(s) 65, 146, 189, 234, 938
BfmI CTRYAG 2 cut(s) 122, 377
BisI GCNGC 4 cut(s) 150, 445, 556, 904
BlsI GCNGC 4 cut(s) 151, 446, 557, 905
Bme1390I CCNGG 3 cut(s) 249, 980, 1088
Bme18I GGWCC 2 cut(s) 161, 237
BmgT120I GGNCC 2 cut(s) 161, 237
BmrFI CCNGG 3 cut(s) 249, 980, 1088
BmsI GCATC 6 cut(s) 512, 590, 640, 692, 782, 1124
BmtI GCTAGC 1 cut(s) 149
BpmI CTGGAG 2 cut(s) 675, 1109
Bpu10I CCTNAGC 1 cut(s) 899
BpuEI CTTGAG 4 cut(s) 677, 836, 880, 896
BpuMI CCSGG 1 cut(s) 980
BsaAI YACGTR 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 1113
BsaJI CCNNGG 1 cut(s) 1086
BsaWI WCCGGW 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bse1I ACTGG 2 cut(s) 346, 831
Bse3DI GCAATG 2 cut(s) 461, 646
BseBI CCWGG 2 cut(s) 249, 1088
BseDI CCNNGG 1 cut(s) 1086
BseGI GGATG 4 cut(s) 394, 605, 797, 870
BseMI GCAATG 2 cut(s) 461, 646
BseMII CTCAG 6 cut(s) 35, 236, 273, 313, 426, 507
BseNI ACTGG 2 cut(s) 346, 831
BseXI GCAGC 3 cut(s) 431, 542, 890
BsgI GTGCAG 2 cut(s) 541, 1018
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 1 cut(s) 350
BsiEI CGRYCG 1 cut(s) 136
BsiSI CCGG 2 cut(s) 136, 979
BsmAI GTCTC 5 cut(s) 55, 185, 225, 854, 1113
BsmBI CGTCTC 1 cut(s) 185
BsmI GAATGC 1 cut(s) 906
BsnI GGCC 1 cut(s) 350
Bso31I GGTCTC 1 cut(s) 1113
Bsp143I GATC 4 cut(s) 451, 529, 586, 1041
BspACI CCGC 3 cut(s) 149, 175, 473
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 6 cut(s) 36, 235, 274, 312, 425, 508
BspMAI CTGCAG 2 cut(s) 126, 381
BspOI GCTAGC 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 1113
BsrDI GCAATG 2 cut(s) 461, 646
BsrI ACTGG 2 cut(s) 346, 831
BssECI CCNNGG 1 cut(s) 1086
BssMI GATC 4 cut(s) 451, 529, 586, 1041
Bst2UI CCWGG 2 cut(s) 249, 1088
Bst4CI ACNGT 5 cut(s) 71, 323, 716, 848, 1048
Bst6I CTCTTC 3 cut(s) 898, 951, 1116
BstBAI YACGTR 1 cut(s) 155
BstC8I GCNNGC 3 cut(s) 147, 750, 1064
BstDEI CTNAG 8 cut(s) 44, 222, 282, 299, 412, 455, 516, 899
BstF5I GGATG 4 cut(s) 394, 605, 797, 870
BstHHI GCGC 1 cut(s) 754
BstKTI GATC 4 cut(s) 454, 532, 589, 1044
BstMAI GTCTC 5 cut(s) 55, 185, 225, 854, 1113
BstMBI GATC 4 cut(s) 451, 529, 586, 1041
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 121, 155
BstNI CCWGG 2 cut(s) 249, 1088
BstNSI RCATGY 1 cut(s) 1121
BstSCI CCNGG 3 cut(s) 247, 978, 1086
BstSFI CTRYAG 2 cut(s) 122, 377
BstV1I GCAGC 3 cut(s) 431, 542, 890
BsuRI GGCC 1 cut(s) 350
BtsCI GGATG 4 cut(s) 394, 605, 797, 870
BtsI GCAGTG 3 cut(s) 923, 969, 1144
BtsIMutI CAGTG 5 cut(s) 76, 567, 923, 969, 1144
Cac8I GCNNGC 3 cut(s) 147, 750, 1064
CaiI CAGNNNCTG 2 cut(s) 341, 971
CfoI GCGC 1 cut(s) 754
Cfr13I GGNCC 2 cut(s) 161, 237
Csp6I GTAC 1 cut(s) 129
CviAII CATG 3 cut(s) 449, 820, 1118
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 8 cut(s) 44, 222, 282, 299, 412, 455, 516, 899
DpnI GATC 4 cut(s) 453, 531, 588, 1043
DpnII GATC 4 cut(s) 451, 529, 586, 1041
DraI TTTAAA 1 cut(s) 1020
Eam1104I CTCTTC 3 cut(s) 898, 951, 1116
EarI CTCTTC 3 cut(s) 898, 951, 1116
EciI GGCGGA 1 cut(s) 164
Eco31I GGTCTC 1 cut(s) 1113
Eco32I GATATC 1 cut(s) 802
Eco47I GGWCC 2 cut(s) 161, 237
Eco72I CACGTG 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 237
EcoRII CCWGG 2 cut(s) 247, 1086
EcoRV GATATC 1 cut(s) 802
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 3 cut(s) 452, 823, 1121
FatI CATG 3 cut(s) 448, 819, 1117
FauI CCCGC 1 cut(s) 466
FauNDI CATATG 1 cut(s) 168
Fnu4HI GCNGC 4 cut(s) 150, 445, 556, 904
FokI GGATG 4 cut(s) 401, 612, 804, 877
Fsp4HI GCNGC 4 cut(s) 150, 445, 556, 904
FspBI CTAG 5 cut(s) 65, 146, 189, 234, 938
GlaI GCGC 1 cut(s) 753
GluI GCNGC 4 cut(s) 150, 445, 556, 904
GsuI CTGGAG 2 cut(s) 675, 1109
HaeIII GGCC 1 cut(s) 350
HapII CCGG 2 cut(s) 136, 979
HhaI GCGC 1 cut(s) 754
Hin1II CATG 3 cut(s) 452, 823, 1121
Hin6I GCGC 1 cut(s) 752
HinP1I GCGC 1 cut(s) 752
HincII GTYRAC 2 cut(s) 19, 1177
HindII GTYRAC 2 cut(s) 19, 1177
HindIII AAGCTT 2 cut(s) 675, 1064
HinfI GANTC 9 cut(s) 260, 288, 497, 572, 734, 766, 812, 833, 890
HpaI GTTAAC 2 cut(s) 19, 1177
HpaII CCGG 2 cut(s) 136, 979
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 4 cut(s) 19, 164, 195, 1177
Hpy188I TCNGA 8 cut(s) 265, 283, 302, 415, 517, 780, 808, 889
Hpy188III TCNNGA 7 cut(s) 60, 533, 694, 727, 770, 853, 938
Hpy8I GTNNAC 4 cut(s) 19, 164, 195, 1177
Hpy99I CGWCG 3 cut(s) 209, 748, 998
HpyAV CCTTC 4 cut(s) 354, 434, 589, 1006
HpyCH4III ACNGT 5 cut(s) 71, 323, 716, 848, 1048
HpyCH4IV ACGT 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 155
HpyF3I CTNAG 8 cut(s) 44, 222, 282, 299, 412, 455, 516, 899
HpySE526I ACGT 1 cut(s) 154
Hsp92II CATG 3 cut(s) 452, 823, 1121
HspAI GCGC 1 cut(s) 752
KspAI GTTAAC 2 cut(s) 19, 1177
Kzo9I GATC 4 cut(s) 451, 529, 586, 1041
LmnI GCTCC 2 cut(s) 177, 990
Lsp1109I GCAGC 3 cut(s) 431, 542, 890
LweI GCATC 6 cut(s) 512, 590, 640, 692, 782, 1124
MaeI CTAG 5 cut(s) 65, 146, 189, 234, 938
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 6 cut(s) 253, 716, 822, 961, 1048, 1120
MalI GATC 4 cut(s) 453, 531, 588, 1043
MboI GATC 4 cut(s) 451, 529, 586, 1041
MboII GAAGA 7 cut(s) 151, 305, 678, 885, 968, 1051, 1103
MfeI CAATTG 1 cut(s) 354
MluCI AATT 4 cut(s) 209, 228, 354, 704
MlyI GAGTC 1 cut(s) 884
MmeI TCCRAC 1 cut(s) 625
MnlI CCTC 8 cut(s) 102, 277, 278, 361, 701, 855, 925, 952
MseI TTAA 7 cut(s) 18, 29, 309, 627, 1019, 1176, 1193
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 2 cut(s) 136, 979
MspR9I CCNGG 3 cut(s) 249, 980, 1088
MunI CAATTG 1 cut(s) 354
Mva1269I GAATGC 1 cut(s) 906
MvaI CCWGG 2 cut(s) 249, 1088
MwoI GCNNNNNNNGC 2 cut(s) 121, 155
NciI CCSGG 1 cut(s) 980
NdeI CATATG 1 cut(s) 168
NdeII GATC 4 cut(s) 451, 529, 586, 1041
NheI GCTAGC 1 cut(s) 145
NlaIII CATG 3 cut(s) 452, 823, 1121
NmuCI GTSAC 2 cut(s) 961, 1120
NspI RCATGY 1 cut(s) 1121
PciI ACATGT 1 cut(s) 1117
PcsI WCGNNNNNNNCGW 1 cut(s) 668
PctI GAATGC 1 cut(s) 906
PfeI GAWTC 8 cut(s) 260, 288, 497, 572, 734, 766, 812, 833
PfoI TCCNGGA 2 cut(s) 247, 978
PkrI GCNGC 4 cut(s) 151, 446, 557, 905
PleI GAGTC 1 cut(s) 884
PmaCI CACGTG 1 cut(s) 155
PmlI CACGTG 1 cut(s) 155
PpsI GAGTC 1 cut(s) 884
Ppu21I YACGTR 1 cut(s) 155
PpuMI RGGWCCY 1 cut(s) 237
PscI ACATGT 1 cut(s) 1117
PshBI ATTAAT 1 cut(s) 627
Psp5II RGGWCCY 1 cut(s) 237
Psp6I CCWGG 2 cut(s) 247, 1086
PspCI CACGTG 1 cut(s) 155
PspGI CCWGG 2 cut(s) 247, 1086
PspPI GGNCC 2 cut(s) 161, 237
PspPPI RGGWCCY 1 cut(s) 237
PstI CTGCAG 2 cut(s) 126, 381
PstNI CAGNNNCTG 2 cut(s) 341, 971
PvuII CAGCTG 1 cut(s) 431
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SaqAI TTAA 7 cut(s) 18, 29, 309, 627, 1019, 1176, 1193
SatI GCNGC 4 cut(s) 150, 445, 556, 904
Sau3AI GATC 4 cut(s) 451, 529, 586, 1041
Sau96I GGNCC 2 cut(s) 161, 237
SchI GAGTC 1 cut(s) 884
ScrFI CCNGG 3 cut(s) 249, 980, 1088
SfaNI GCATC 6 cut(s) 512, 590, 640, 692, 782, 1124
SfcI CTRYAG 2 cut(s) 122, 377
SinI GGWCC 2 cut(s) 161, 237
SmlI CTYRAG 4 cut(s) 692, 851, 859, 911
SmoI CTYRAG 4 cut(s) 692, 851, 859, 911
Sse9I AATT 4 cut(s) 209, 228, 354, 704
SsiI CCGC 3 cut(s) 149, 175, 473
SspMI CTAG 5 cut(s) 65, 146, 189, 234, 938
StyD4I CCNGG 3 cut(s) 247, 978, 1086
TaaI ACNGT 5 cut(s) 71, 323, 716, 848, 1048
TaiI ACGT 1 cut(s) 157
TaqI TCGA 4 cut(s) 59, 207, 534, 662
TasI AATT 4 cut(s) 209, 228, 354, 704
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 8 cut(s) 260, 288, 497, 572, 734, 766, 812, 833
Tru1I TTAA 7 cut(s) 18, 29, 309, 627, 1019, 1176, 1193
Tru9I TTAA 7 cut(s) 18, 29, 309, 627, 1019, 1176, 1193
TscAI CASTG 5 cut(s) 76, 574, 923, 976, 1144
TseFI GTSAC 2 cut(s) 961, 1120
TseI GCWGC 3 cut(s) 444, 555, 903
Tsp45I GTSAC 2 cut(s) 961, 1120
TspDTI ATGAA 2 cut(s) 475, 510
TspRI CASTG 5 cut(s) 76, 574, 923, 976, 1144
VpaK11BI GGWCC 2 cut(s) 161, 237
VspI ATTAAT 1 cut(s) 627
XbaI TCTAGA 1 cut(s) 937
XceI RCATGY 1 cut(s) 1121
XspI CTAG 5 cut(s) 65, 146, 189, 234, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.