Rmu_sc0011539.1_g000001

Leucine Rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011539.1
OG0015952
Physical Location & Seq
Reverse (-)
1 .. 511
511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011539.1_g000001.1.cds

Sequence Viewer

Length: 319 bp
atgggcggaagcatcaacgaggcattgagagatgacgagcttcgatcggtgctggcgaagctggagagtcagcgggacaaggaggtgttcgggttggtgtgcaagaggtggcttcacttgcagagcactgagaggaggaggctgtccgcacgtgcggggcctcacatgctccgcaaaatggctgccaggttctcccgccttcatgagctcgacctctcccagtccctttccaggtccttctatccaggtgtcaccgactctgatctctccgtcattgccaatggcttcaactgcttgaggctcctcactctccaaaact
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

106

Amino Acids

12.09

Weight (kDa)

9.87

Isoelectric Point (pI)

80.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23340
fragaria_vesca FvH4_4g37160
prunus_persica Prupe.1G349400_v2.0.a1
pyrus_communis pycom13g00250
rosa_chinensis RchiOBHm_Chr4g0446961
rosa_laevigata RLG00000005617
rosa_multiflora Rmu_sc0001753.1_g000005 Rmu_sc0011539.1_g000001
rosa_roxburghii Rroxscaffold_5G00387290
rosa_rugosa Rorug04G0376500
rosa_samantha Rh4AG438000 Rh4BG446900 Rh4CG464200 Rh4DG445700
rosa_wichuraiana Rw4G037460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 6, 73, 147, 155, 172, 196
AcvI CACGTG 1 cut(s) 152
AfiI CCNNNNNNNGG 2 cut(s) 178, 231
AgsI TTSAA 1 cut(s) 289
AjnI CCWGG 3 cut(s) 185, 230, 244
AluBI AGCT 3 cut(s) 40, 61, 208
AluI AGCT 3 cut(s) 40, 61, 208
Alw21I GWGCWC 2 cut(s) 128, 210
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 158, 234
AsuHPI GGTGA 1 cut(s) 244
AvaII GGWCC 1 cut(s) 234
BanII GRGCYC 1 cut(s) 210
BbrPI CACGTG 1 cut(s) 152
Bbv12I GWGCWC 2 cut(s) 128, 210
BbvI GCAGC 1 cut(s) 169
BciT130I CCWGG 3 cut(s) 187, 232, 246
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 3 cut(s) 187, 232, 246
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 2 cut(s) 158, 234
BmiI GGNNCC 2 cut(s) 159, 302
BmrFI CCNGG 3 cut(s) 187, 232, 246
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 214
BpmI CTGGAG 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 316
BsaAI YACGTR 1 cut(s) 152
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 231
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 273
BseBI CCWGG 3 cut(s) 187, 232, 246
BseLI CCNNNNNNNGG 2 cut(s) 178, 231
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 3 cut(s) 148, 151, 293
BseXI GCAGC 1 cut(s) 169
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 1 cut(s) 160
BsiEI CGRYCG 1 cut(s) 47
BsiHKAI GWGCWC 2 cut(s) 128, 210
BslFI GGGAC 2 cut(s) 89, 208
BslI CCNNNNNNNGG 2 cut(s) 178, 231
BsmFI GGGAC 2 cut(s) 89, 208
BsnI GGCC 1 cut(s) 160
Bsp1286I GDGCHC 2 cut(s) 128, 210
Bsp143I GATC 2 cut(s) 44, 262
BspACI CCGC 6 cut(s) 6, 73, 147, 155, 172, 196
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 121
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 2 cut(s) 159, 302
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 1 cut(s) 220
BssMI GATC 2 cut(s) 44, 262
Bst2UI CCWGG 3 cut(s) 187, 232, 246
BstBAI YACGTR 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 129
BstKTI GATC 2 cut(s) 47, 265
BstMBI GATC 2 cut(s) 44, 262
BstMCI CGRYCG 1 cut(s) 47
BstMWI GCNNNNNNNGC 4 cut(s) 58, 118, 166, 291
BstNI CCWGG 3 cut(s) 187, 232, 246
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 3 cut(s) 185, 230, 244
BstV1I GCAGC 1 cut(s) 169
BsuRI GGCC 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 54
CciI TCATGA 1 cut(s) 202
Cfr13I GGNCC 2 cut(s) 158, 234
CviAII CATG 2 cut(s) 166, 203
CviJI RGCY 9 cut(s) 40, 61, 112, 142, 160, 182, 208, 285, 301
CviKI_1 RGCY 9 cut(s) 40, 61, 112, 142, 160, 182, 208, 285, 301
DdeI CTNAG 1 cut(s) 129
DpnI GATC 2 cut(s) 46, 264
DpnII GATC 2 cut(s) 44, 262
EciI GGCGGA 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 234
Eco53kI GAGCTC 1 cut(s) 208
Eco72I CACGTG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 208
EcoO109I RGGNCCY 2 cut(s) 158, 234
EcoRII CCWGG 3 cut(s) 185, 230, 244
EcoT38I GRGCYC 1 cut(s) 210
FaeI CATG 2 cut(s) 169, 206
FaiI YATR 2 cut(s) 167, 204
FaqI GGGAC 2 cut(s) 89, 208
FatI CATG 2 cut(s) 165, 202
FauI CCCGC 3 cut(s) 66, 148, 203
Fnu4HI GCNGC 1 cut(s) 183
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 1 cut(s) 160
Hin1II CATG 2 cut(s) 169, 206
HinfI GANTC 2 cut(s) 67, 257
HphI GGTGA 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 203
HpyAV CCTTC 2 cut(s) 209, 247
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 102, 121
HpyF10VI GCNNNNNNNGC 4 cut(s) 58, 118, 166, 291
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 2 cut(s) 169, 206
Kzo9I GATC 2 cut(s) 44, 262
LmnI GCTCC 2 cut(s) 174, 306
LpnPI CCDG 9 cut(s) 38, 47, 172, 199, 217, 231, 233, 244, 258
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 21
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 1 cut(s) 250
MalI GATC 2 cut(s) 46, 264
MboI GATC 2 cut(s) 44, 262
MhlI GDGCHC 2 cut(s) 128, 210
MlyI GAGTC 2 cut(s) 76, 251
MspA1I CMGCKG 1 cut(s) 73
MspR9I CCNGG 3 cut(s) 187, 232, 246
MvaI CCWGG 3 cut(s) 187, 232, 246
MwoI GCNNNNNNNGC 4 cut(s) 58, 118, 166, 291
NdeII GATC 2 cut(s) 44, 262
NlaIII CATG 2 cut(s) 169, 206
NlaIV GGNNCC 2 cut(s) 159, 302
NmuCI GTSAC 1 cut(s) 250
NspI RCATGY 1 cut(s) 169
PagI TCATGA 1 cut(s) 202
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PkrI GCNGC 1 cut(s) 184
Ple19I CGATCG 1 cut(s) 47
PleI GAGTC 2 cut(s) 75, 251
PmaCI CACGTG 1 cut(s) 152
PmlI CACGTG 1 cut(s) 152
PpsI GAGTC 2 cut(s) 75, 251
Ppu21I YACGTR 1 cut(s) 152
PpuMI RGGWCCY 1 cut(s) 234
Psp124BI GAGCTC 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 234
Psp6I CCWGG 3 cut(s) 185, 230, 244
PspCI CACGTG 1 cut(s) 152
PspGI CCWGG 3 cut(s) 185, 230, 244
PspN4I GGNNCC 2 cut(s) 159, 302
PspPI GGNCC 2 cut(s) 158, 234
PspPPI RGGWCCY 1 cut(s) 234
PvuI CGATCG 1 cut(s) 47
SacI GAGCTC 1 cut(s) 210
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 2 cut(s) 44, 262
Sau96I GGNCC 2 cut(s) 158, 234
SchI GAGTC 2 cut(s) 76, 251
ScrFI CCNGG 3 cut(s) 187, 232, 246
SduI GDGCHC 2 cut(s) 128, 210
SfaNI GCATC 1 cut(s) 21
SinI GGWCC 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
SsiI CCGC 6 cut(s) 6, 73, 147, 155, 172, 196
SstI GAGCTC 1 cut(s) 210
StyD4I CCNGG 3 cut(s) 185, 230, 244
TaiI ACGT 1 cut(s) 154
TaqI TCGA 2 cut(s) 43, 210
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 191
TspGWI ACGGA 1 cut(s) 259
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 234
XceI RCATGY 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.