Prupe.1G349400_v2.0.a1

Leucine Rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015952
Physical Location & Seq
Forward (+)
32582606 .. 32584437
1832 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G349400.1

Sequence Viewer

Length: 1245 bp
ATGGCTTCTTCAGCCGATTCCTCCTCAATAACGGTATGCATAAACGAGGCATTGACGGATGATGAGCTCCGGTCGGTGCTAGCAAAGCTGGAGAGCCAGAGGGACAAGGAGGTCTTCGGGTTGGTCTGCAAAAGGTGGCTTCATTTGCAGAGCACGGAGAGGAAGAGGCTTTCGGCACGTGCGGGGCCTCATATGCTTCGCAGAATGGCTGACAGGTTCTCCAGGCTTCATGAACTGGACCTCTCCCAGTCCATTTCGAGGTCCTTCTATCCTGGTGTCATTGACTCTGATCTCCGTGTTATTGCTCATGGATTTAAGTGCTTGAGAGTCCTTAATTTGCAGAATTGCAAAGGAATTTCAGATTCCGGTGTCCTTTTCGTTGGATCTGGTCTTTCATCACTACAGTCCCTGGATGTATCATATTGCAGGAAGTTAACAGACAAAGGATTATCAGCTGTTGCTGAGGGCTGCTCTGACCTTCGGAGCCTTTATCTTGCTGGCTGCAGATTTGTTACTGATGGATTATTGCGAGCCCTTTCAAAGAATTGTCACTATTTAGAAGAGTTGGGGCTCCAAGGTTGCACCAACATAACTGACTCTGGACTTACTGATCTTGTAAATGGATGTCAACAGATCAAATTTTTAGATATCAACAAATGCAGCAATATTGGAGATATTGGAGTTTCCAGTGTCTCCATGGCATGCTCATCTTCTCTGAAGACACTGAAGTTGTTGGATTGCTACAAAATCGGGGACGAGTCTATTTTATCCTTGGCCAGATTCTGCAAAAATCTTGAAACTCTAGTAGTTGGTGGCTGCCGGGACATATCTGATGCATCAATAAAATTGCTGGCTATTTCTTGTAAGAGTAATCTCAAGAACTTGCGGATGGATTGGTGTTTAAATATCACTGACTCTTCTTTGAGCTGCATCCTTGCTCAGTGCAGAAACCTCGAGGCTCTTGACATTGGGTGCTGTGAGGAGGTGACAGATGCTGCCTTTCATGGTTTAAATGGTGAAGAAAATGAGTTGAGTTTGAAAGTTTTAAAGGTCAGCAACTGCCCAAAAATAACTGTGACAGGCATTGGCATGCTTTTGGACAAATGTGACTCTCTAGAATACCTGGATGTGAGGTCATGCCCACACATTACAAAGGCAGGTTGTGATGAAGCGGGATTGCAGTTTTCTGAATCTTGTAAAGTGAACTTCACGGGGAGCTTATGCGAGCCTGACGTGTTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

415

Amino Acids

45.09

Weight (kDa)

5.88

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23340
fragaria_vesca FvH4_4g37160
prunus_persica Prupe.1G349400_v2.0.a1
pyrus_communis pycom13g00250
rosa_chinensis RchiOBHm_Chr4g0446961
rosa_laevigata RLG00000005617
rosa_multiflora Rmu_sc0001753.1_g000005 Rmu_sc0011539.1_g000001
rosa_roxburghii Rroxscaffold_5G00387290
rosa_rugosa Rorug04G0376500
rosa_samantha Rh4AG438000 Rh4BG446900 Rh4CG464200 Rh4DG445700
rosa_wichuraiana Rw4G037460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AbsI CCTCGAGG 1 cut(s) 953
Acc36I ACCTGC 1 cut(s) 1148
AciI CCGC 3 cut(s) 182, 886, 1172
AclWI GGATC 1 cut(s) 391
AcoI YGGCCR 1 cut(s) 774
AcsI RAATTY 2 cut(s) 354, 638
AcuI CTGAAG 2 cut(s) 737, 746
AcvI CACGTG 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 258
AflIII ACRYGT 1 cut(s) 1233
AgsI TTSAA 3 cut(s) 540, 797, 1039
AjiI CACGTC 1 cut(s) 1234
AjnI CCWGG 4 cut(s) 221, 271, 408, 1122
AluBI AGCT 5 cut(s) 67, 88, 455, 927, 1218
AluI AGCT 5 cut(s) 67, 88, 455, 927, 1218
Alw21I GWGCWC 2 cut(s) 69, 155
Alw26I GTCTC 1 cut(s) 697
AlwI GGATC 1 cut(s) 391
AlwNI CAGNNNCTG 4 cut(s) 409, 783, 995, 1059
Ama87I CYCGRG 1 cut(s) 953
AoxI GGCC 2 cut(s) 185, 774
ApeKI GCWGC 6 cut(s) 468, 501, 660, 816, 927, 995
ApoI RAATTY 2 cut(s) 354, 638
AspS9I GGNCC 3 cut(s) 185, 238, 261
AsuC2I CCSGG 1 cut(s) 821
AsuHPI GGTGA 2 cut(s) 997, 1028
AsuNHI GCTAGC 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 953
AvaII GGWCC 2 cut(s) 238, 261
BalI TGGCCA 1 cut(s) 776
BanII GRGCYC 3 cut(s) 69, 535, 573
BbrPI CACGTG 1 cut(s) 179
BbsI GAAGAC 2 cut(s) 106, 725
Bbv12I GWGCWC 2 cut(s) 69, 155
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 6 cut(s) 455, 488, 672, 803, 914, 982
BccI CCATC 2 cut(s) 512, 883
BcgI CGANNNNNNTGC 2 cut(s) 934, 968
BciT130I CCWGG 4 cut(s) 223, 273, 410, 1124
BcnI CCSGG 1 cut(s) 821
BcoDI GTCTC 1 cut(s) 697
BfaI CTAG 3 cut(s) 80, 803, 1115
BfmI CTRYAG 2 cut(s) 401, 502
BfuAI ACCTGC 1 cut(s) 1148
BisI GCNGC 6 cut(s) 469, 502, 661, 817, 928, 996
BlsI GCNGC 6 cut(s) 470, 503, 662, 818, 929, 997
Bme1390I CCNGG 5 cut(s) 223, 273, 410, 821, 1124
Bme18I GGWCC 2 cut(s) 238, 261
BmeT110I CYCGRG 1 cut(s) 953
BmgBI CACGTC 1 cut(s) 1234
BmgT120I GGNCC 3 cut(s) 185, 238, 261
BmiI GGNNCC 3 cut(s) 186, 485, 572
BmrFI CCNGG 5 cut(s) 223, 273, 410, 821, 1124
BmrI ACTGGG 1 cut(s) 241
BmsI GCATC 4 cut(s) 823, 845, 939, 982
BmtI GCTAGC 1 cut(s) 83
BmuI ACTGGG 1 cut(s) 241
BpiI GAAGAC 2 cut(s) 106, 725
BplI GAGNNNNNCTC 2 cut(s) 455, 487
BpmI CTGGAG 2 cut(s) 110, 205
Bpu10I CCTNAGC 1 cut(s) 462
BpuEI CTTGAG 2 cut(s) 343, 860
BpuMI CCSGG 1 cut(s) 821
BsaAI YACGTR 1 cut(s) 179
BsaJI CCNNGG 4 cut(s) 408, 574, 696, 771
BsaWI WCCGGW 2 cut(s) 69, 365
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 3 cut(s) 240, 247, 687
BseBI CCWGG 4 cut(s) 223, 273, 410, 1124
BseDI CCNNGG 4 cut(s) 408, 574, 696, 771
BseGI GGATG 6 cut(s) 64, 418, 629, 894, 930, 1132
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 2 cut(s) 453, 953
BseNI ACTGG 3 cut(s) 240, 247, 687
BseRI GAGGAG 2 cut(s) 13, 995
BseXI GCAGC 6 cut(s) 455, 488, 672, 803, 914, 982
BsgI GTGCAG 1 cut(s) 964
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 2 cut(s) 187, 776
BsiEI CGRYCG 1 cut(s) 74
BsiHKAI GWGCWC 2 cut(s) 69, 155
BsiHKCI CYCGRG 1 cut(s) 953
BsiSI CCGG 3 cut(s) 70, 366, 820
BslFI GGGAC 4 cut(s) 116, 391, 767, 836
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 697
BsmFI GGGAC 4 cut(s) 116, 391, 767, 836
BsnI GGCC 2 cut(s) 187, 776
BsoBI CYCGRG 1 cut(s) 953
Bsp1286I GDGCHC 4 cut(s) 69, 155, 535, 573
Bsp143I GATC 4 cut(s) 289, 383, 610, 633
Bsp19I CCATGG 1 cut(s) 696
BspACI CCGC 3 cut(s) 182, 886, 1172
BspANI GGCC 2 cut(s) 187, 776
BspCNI CTCAG 2 cut(s) 454, 952
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 3 cut(s) 186, 485, 572
BspMAI CTGCAG 1 cut(s) 506
BspMI ACCTGC 1 cut(s) 1148
BspOI GCTAGC 1 cut(s) 83
BspPI GGATC 1 cut(s) 391
BsrI ACTGG 3 cut(s) 240, 247, 687
BssECI CCNNGG 4 cut(s) 408, 574, 696, 771
BssMI GATC 4 cut(s) 289, 383, 610, 633
BssT1I CCWWGG 3 cut(s) 574, 696, 771
Bst2UI CCWGG 4 cut(s) 223, 273, 410, 1124
Bst4CI ACNGT 3 cut(s) 34, 405, 1075
Bst6I CTCTTC 3 cut(s) 158, 555, 922
BstBAI YACGTR 1 cut(s) 179
BstC8I GCNNGC 7 cut(s) 81, 499, 531, 703, 852, 1091, 1226
BstDEI CTNAG 2 cut(s) 462, 939
BstDSI CCRYGG 1 cut(s) 696
BstF5I GGATG 6 cut(s) 64, 418, 629, 894, 930, 1132
BstKTI GATC 4 cut(s) 292, 386, 613, 636
BstMAI GTCTC 1 cut(s) 697
BstMBI GATC 4 cut(s) 289, 383, 610, 633
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 4 cut(s) 11, 85, 145, 193
BstNI CCWGG 4 cut(s) 223, 273, 410, 1124
BstNSI RCATGY 2 cut(s) 705, 1093
BstSCI CCNGG 5 cut(s) 221, 271, 408, 819, 1122
BstSFI CTRYAG 2 cut(s) 401, 502
BstV1I GCAGC 6 cut(s) 455, 488, 672, 803, 914, 982
BstV2I GAAGAC 2 cut(s) 106, 725
BstX2I RGATCY 1 cut(s) 383
BstYI RGATCY 1 cut(s) 383
BsuRI GGCC 2 cut(s) 187, 776
BtgI CCRYGG 1 cut(s) 696
BtrI CACGTC 1 cut(s) 1234
BtsCI GGATG 6 cut(s) 64, 418, 629, 894, 930, 1132
BtsIMutI CAGTG 4 cut(s) 694, 722, 909, 947
BveI ACCTGC 1 cut(s) 1148
Cac8I GCNNGC 7 cut(s) 81, 499, 531, 703, 852, 1091, 1226
CaiI CAGNNNCTG 4 cut(s) 409, 783, 995, 1059
CciI TCATGA 1 cut(s) 229
Cfr13I GGNCC 3 cut(s) 185, 238, 261
CviAII CATG 7 cut(s) 230, 308, 697, 702, 1004, 1090, 1137
DdeI CTNAG 2 cut(s) 462, 939
DpnI GATC 4 cut(s) 291, 385, 612, 635
DpnII GATC 4 cut(s) 289, 383, 610, 633
DraI TTTAAA 3 cut(s) 903, 1011, 1047
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 774
Eam1104I CTCTTC 3 cut(s) 158, 555, 922
EarI CTCTTC 3 cut(s) 158, 555, 922
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 3 cut(s) 574, 696, 771
Eco24I GRGCYC 3 cut(s) 69, 535, 573
Eco32I GATATC 1 cut(s) 649
Eco47I GGWCC 2 cut(s) 238, 261
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 2 cut(s) 737, 746
Eco72I CACGTG 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 953
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 2 cut(s) 185, 261
EcoRII CCWGG 4 cut(s) 221, 271, 408, 1122
EcoRV GATATC 1 cut(s) 649
EcoT14I CCWWGG 3 cut(s) 574, 696, 771
EcoT22I ATGCAT 2 cut(s) 41, 838
EcoT38I GRGCYC 3 cut(s) 69, 535, 573
ErhI CCWWGG 3 cut(s) 574, 696, 771
FaeI CATG 7 cut(s) 233, 311, 700, 705, 1007, 1093, 1140
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FaqI GGGAC 4 cut(s) 116, 391, 767, 836
FatI CATG 7 cut(s) 229, 307, 696, 701, 1003, 1089, 1136
FauI CCCGC 2 cut(s) 175, 1165
FauNDI CATATG 1 cut(s) 192
Fnu4HI GCNGC 6 cut(s) 469, 502, 661, 817, 928, 996
FokI GGATG 6 cut(s) 71, 425, 636, 901, 917, 1139
FriOI GRGCYC 3 cut(s) 69, 535, 573
Fsp4HI GCNGC 6 cut(s) 469, 502, 661, 817, 928, 996
FspBI CTAG 3 cut(s) 80, 803, 1115
GluI GCNGC 6 cut(s) 469, 502, 661, 817, 928, 996
GsuI CTGGAG 2 cut(s) 110, 205
HaeIII GGCC 2 cut(s) 187, 776
HapII CCGG 3 cut(s) 70, 366, 820
Hin1II CATG 7 cut(s) 233, 311, 700, 705, 1007, 1093, 1140
HincII GTYRAC 2 cut(s) 435, 629
HindII GTYRAC 2 cut(s) 435, 629
HpaI GTTAAC 1 cut(s) 435
HpaII CCGG 3 cut(s) 70, 366, 820
HphI GGTGA 2 cut(s) 997, 1028
Hpy166II GTNNAC 3 cut(s) 435, 629, 1204
Hpy188I TCNGA 7 cut(s) 289, 361, 475, 483, 717, 832, 1189
Hpy188III TCNNGA 6 cut(s) 230, 600, 794, 877, 962, 1115
Hpy8I GTNNAC 3 cut(s) 435, 629, 1204
HpyAV CCTTC 2 cut(s) 274, 488
HpyCH4III ACNGT 3 cut(s) 34, 405, 1075
HpyCH4IV ACGT 2 cut(s) 178, 1233
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 85, 145, 193
HpyF3I CTNAG 2 cut(s) 462, 939
HpySE526I ACGT 2 cut(s) 178, 1233
Hsp92II CATG 7 cut(s) 233, 311, 700, 705, 1007, 1093, 1140
KspAI GTTAAC 1 cut(s) 435
Kzo9I GATC 4 cut(s) 289, 383, 610, 633
LmnI GCTCC 4 cut(s) 72, 483, 576, 1215
Lsp1109I GCAGC 6 cut(s) 455, 488, 672, 803, 914, 982
LweI GCATC 4 cut(s) 823, 845, 939, 982
MaeI CTAG 3 cut(s) 80, 803, 1115
MaeII ACGT 2 cut(s) 178, 1233
MaeIII GTNAC 6 cut(s) 511, 548, 985, 1075, 1106, 1236
MalI GATC 4 cut(s) 291, 385, 612, 635
MboI GATC 4 cut(s) 289, 383, 610, 633
MboII GAAGA 7 cut(s) 106, 175, 572, 702, 730, 909, 1031
MflI RGATCY 1 cut(s) 383
MhlI GDGCHC 4 cut(s) 69, 155, 535, 573
MlsI TGGCCA 1 cut(s) 776
MluCI AATT 6 cut(s) 334, 343, 354, 544, 638, 845
MluNI TGGCCA 1 cut(s) 776
MlyI GAGTC 6 cut(s) 278, 336, 590, 767, 908, 1103
MmeI TCCRAC 2 cut(s) 361, 714
Mox20I TGGCCA 1 cut(s) 776
Mph1103I ATGCAT 2 cut(s) 41, 838
MscI TGGCCA 1 cut(s) 776
MseI TTAA 6 cut(s) 315, 333, 434, 902, 1010, 1046
MslI CAYNNNNRTG 1 cut(s) 1088
Msp20I TGGCCA 1 cut(s) 776
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 3 cut(s) 70, 366, 820
MspR9I CCNGG 5 cut(s) 223, 273, 410, 821, 1124
MvaI CCWGG 4 cut(s) 223, 273, 410, 1124
MwoI GCNNNNNNNGC 4 cut(s) 11, 85, 145, 193
NciI CCSGG 1 cut(s) 821
NcoI CCATGG 1 cut(s) 696
NdeI CATATG 1 cut(s) 192
NdeII GATC 4 cut(s) 289, 383, 610, 633
NheI GCTAGC 1 cut(s) 79
NlaIII CATG 7 cut(s) 233, 311, 700, 705, 1007, 1093, 1140
NlaIV GGNNCC 3 cut(s) 186, 485, 572
NmuCI GTSAC 4 cut(s) 548, 985, 1075, 1106
NsiI ATGCAT 2 cut(s) 41, 838
NspI RCATGY 2 cut(s) 705, 1093
PaeI GCATGC 2 cut(s) 705, 1093
PaeR7I CTCGAG 1 cut(s) 953
PagI TCATGA 1 cut(s) 229
PfeI GAWTC 4 cut(s) 17, 362, 780, 1190
PkrI GCNGC 6 cut(s) 470, 503, 662, 818, 929, 997
PleI GAGTC 6 cut(s) 278, 335, 590, 766, 908, 1103
PmaCI CACGTG 1 cut(s) 179
PmlI CACGTG 1 cut(s) 179
PpsI GAGTC 6 cut(s) 278, 335, 590, 766, 908, 1103
Ppu21I YACGTR 1 cut(s) 179
PpuMI RGGWCCY 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 261
Psp6I CCWGG 4 cut(s) 221, 271, 408, 1122
PspCI CACGTG 1 cut(s) 179
PspGI CCWGG 4 cut(s) 221, 271, 408, 1122
PspN4I GGNNCC 3 cut(s) 186, 485, 572
PspPI GGNCC 3 cut(s) 185, 238, 261
PspPPI RGGWCCY 1 cut(s) 261
PspXI VCTCGAGB 1 cut(s) 953
PstI CTGCAG 1 cut(s) 506
PstNI CAGNNNCTG 4 cut(s) 409, 783, 995, 1059
PsuI RGATCY 1 cut(s) 383
PvuII CAGCTG 1 cut(s) 455
RseI CAYNNNNRTG 1 cut(s) 1088
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 6 cut(s) 315, 333, 434, 902, 1010, 1046
SatI GCNGC 6 cut(s) 469, 502, 661, 817, 928, 996
Sau3AI GATC 4 cut(s) 289, 383, 610, 633
Sau96I GGNCC 3 cut(s) 185, 238, 261
SchI GAGTC 6 cut(s) 278, 336, 590, 767, 908, 1103
ScrFI CCNGG 5 cut(s) 223, 273, 410, 821, 1124
SduI GDGCHC 4 cut(s) 69, 155, 535, 573
SfaNI GCATC 4 cut(s) 823, 845, 939, 982
SfcI CTRYAG 2 cut(s) 401, 502
Sfr274I CTCGAG 1 cut(s) 953
SinI GGWCC 2 cut(s) 238, 261
SlaI CTCGAG 1 cut(s) 953
SmiMI CAYNNNNRTG 1 cut(s) 1088
SmlI CTYRAG 3 cut(s) 322, 875, 953
SmoI CTYRAG 3 cut(s) 322, 875, 953
SphI GCATGC 2 cut(s) 705, 1093
Sse9I AATT 6 cut(s) 334, 343, 354, 544, 638, 845
SsiI CCGC 3 cut(s) 182, 886, 1172
SspI AATATT 1 cut(s) 667
SspMI CTAG 3 cut(s) 80, 803, 1115
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 5 cut(s) 221, 271, 408, 819, 1122
StyI CCWWGG 3 cut(s) 574, 696, 771
TaaI ACNGT 3 cut(s) 34, 405, 1075
TaiI ACGT 2 cut(s) 181, 1236
TaqI TCGA 2 cut(s) 257, 954
TasI AATT 6 cut(s) 334, 343, 354, 544, 638, 845
TfiI GAWTC 4 cut(s) 17, 362, 780, 1190
Tru1I TTAA 6 cut(s) 315, 333, 434, 902, 1010, 1046
Tru9I TTAA 6 cut(s) 315, 333, 434, 902, 1010, 1046
TscAI CASTG 4 cut(s) 694, 729, 916, 947
TseFI GTSAC 4 cut(s) 548, 985, 1075, 1106
TseI GCWGC 6 cut(s) 468, 501, 660, 816, 927, 995
Tsp45I GTSAC 4 cut(s) 548, 985, 1075, 1106
TspDTI ATGAA 6 cut(s) 131, 218, 246, 384, 992, 1182
TspGWI ACGGA 3 cut(s) 71, 170, 284
TspRI CASTG 4 cut(s) 694, 729, 916, 947
VpaK11BI GGWCC 2 cut(s) 238, 261
XapI RAATTY 2 cut(s) 354, 638
XbaI TCTAGA 1 cut(s) 1114
XceI RCATGY 2 cut(s) 705, 1093
XcmI CCANNNNNNNNNTGG 1 cut(s) 694
XhoI CTCGAG 1 cut(s) 953
XspI CTAG 3 cut(s) 80, 803, 1115
Zsp2I ATGCAT 2 cut(s) 41, 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.