Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002622

Physical Location & Seq

Genomic Coordinates Forward (+)

54746178 .. 54750241

Gene Structure 4064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0376500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGTGGAGTCATTTAGCCAAGCGCTTTGGGACCACCCAACCAATGCACAAAACATGGGTTTTTGTGACATTAATGGTCAGACCAGTGCAAGCACTTCAAACACAATGGGAATTAGAAAAGGGATTCCTGCCTCTTTGAGAAGTGGGATTGATAGACCACTTGATATGTGTTGGAACCCACCAAATTCGATGTTGAAAGGGGGAATTTTCTTACCAAATGGGCCGGCAGGGATGCTACCGCAGAGCTTGTCTCAGTTTCCAGCTGATTCTGGGTTCATTGAGCGTGCTGCTAGGTTCTCGTGCTTCAATGGTGGGAATTTTAGTGATATGATGAACCCTTTTGTTGTTCCTGAATCGATGAGTCTTTATTCTAAGGGTGGGGGAATGATGCAATGGGCTGTGGCAGGCCAGGGGCCTAAAGCAATGTCCAGCAATGAGCTCAATCAAGTAGGTGATGCTTCGAACGAGGTTTCTTTGCCTATTGATCATGGGGCAACTGATGGGAGCCCACTTAAGAATGAGAAGAAAAGTGAGAGTCTTGTGAAGTCTCATGATGAAGCAAAAAATGCAATGGATGGGTCTGGTAACGAGTCTGATGAAGCCGATTTCAGTGGTGGTGCGGAGGAGCCGTCTATGATGGAGGGTACAGGGGTAGGACCTTCTTCTAAGGGCTCTAAGAAAAGGAAAAGGAGTGGACAGGCTAATGAACTTGATCAAACCAAAATAGCTGCACATCAATCCGTTGAATCAACAAAGGATGATACTGAAATGGTACAGAAGGGAGCTTCAACTACCAACAAGACTACTGGAAAACTTGTCAAACAAGGGTCTCAGACGTCTGATCTACCAAAAGAAGAATATATTCATGTTAGGGCTCGAAGAGGCCAAGCAACAAATAGCCATAGTCTTGCAGAAAGAGTCAGAAGGGAGAAGATCAGTGAGAGGATGAAGTTTCTTCAAGATCTTGTACCTGGATGTAGCAAGGTAACTGGGAAGGCAGTGATGCTGGACGAAATCATTAACTATGTACAGTCATTGCAACGGCAGGTTGAGTTTTTGTCAATGAAACTTGCAACAGTGAATCCACGATTGGATTTAAACATTGAAAGCCTCCTGGAAAAAGATATCCTTCAGTCACGAGTTGGACCTTCATCTTCGATGGGATTTTCTCCGGATATGCATATTGCCTATCCTCCACTTCATCCATCTCAGTCGGGACTTATTCAAGCAGGCCTTCCTGGGATGGGGAGCTCTTCTGATTTGCTTCGAAGGGCCATGGGTTCCCAAATGGCACCTATGACTGGAGGATTCAAGGAGCCTTCCCAGCTACCAAATGTGTGGGAGGATGAGCTCCAGAATGTTTTCCAAATGAGCTATGGAACTGGAACTCCCTCCAATAGCCAAGATGTCGATGTGCTAAATTTGCAGGATCTGGGACACCAGGCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF829

Protein Analysis

483

Amino Acids

52.04

Weight (kDa)

5.69

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	299 - 347	1.5e-06	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	305 - 350	3e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19970 AT3G19970 AT3G19970 AT3G19970 AT3G19970
fragaria_vesca	FvH4_4g37150 FvH4_7g21480
malus_domestica	MD13G1003100.v1.1
prunus_persica	Prupe.1G349300_v2.0.a1
pyrus_communis	pycom13g00260 pycom16g00170
rosa_chinensis	RchiOBHm_Chr1g0365791 RchiOBHm_Chr4g0409441 RchiOBHm_Chr4g0446951
rosa_laevigata	RLG00000005618 RLG00000027396
rosa_multiflora	Rmu_co8345695.1_g000001 Rmu_sc0001753.1_g000006 Rmu_sc0002365.1_g000009 Rmu_sc0004311.1_g000013 Rmu_sc0011539.1_g000002 Rmu_sc0034955.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290870 Rroxscaffold_5G00387280
rosa_rugosa	Rorug01G0324300 Rorug03G0341000 Rorug03G0341000 Rorug04G0376500
rosa_samantha	Rh1AG333200 Rh1BG294100 Rh1CG310800 Rh1DG326500 Rh4AG437900 Rh4BG446800 Rh4CG464100 Rh4DG445600
rosa_wichuraiana	Rw0G014000 Rw1G006220 Rw1G029570 Rw4G037450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	839
Acc36I	ACCTGC	1 cut(s)	1036
AccB1I	GGYRCC	1 cut(s)	1291
AccIII	TCCGGA	1 cut(s)	1171
AciI	CCGC	2 cut(s)	239, 620
AclWI	GGATC	1 cut(s)	1437
AcsI	RAATTY	4 cut(s)	184, 204, 316, 1420
AcuI	CTGAAG	1 cut(s)	1115
AcyI	GRCGYC	1 cut(s)	836
AfaI	GTAC	4 cut(s)	646, 774, 969, 1029
AfeI	AGCGCT	1 cut(s)	24
AfiI	CCNNNNNNNGG	2 cut(s)	1244, 1301
AflII	CTTAAG	1 cut(s)	512
AgsI	TTSAA	9 cut(s)	99, 196, 307, 746, 789, 959, 1106, 1226, 1312
AjnI	CCWGG	5 cut(s)	408, 970, 1113, 1237, 1440
AjuI	GAANNNNNNNTTGG	2 cut(s)	1073, 1105
AloI	GAACNNNNNNTCC	2 cut(s)	1372, 1404
AluBI	AGCT	9 cut(s)	246, 263, 439, 728, 785, 1251, 1327, 1351, 1374
AluI	AGCT	9 cut(s)	246, 263, 439, 728, 785, 1251, 1327, 1351, 1374
Alw21I	GWGCWC	3 cut(s)	441, 1253, 1353
Alw26I	GTCTC	3 cut(s)	255, 552, 834
AlwI	GGATC	1 cut(s)	1437
AlwNI	CAGNNNCTG	1 cut(s)	1432
Aor13HI	TCCGGA	1 cut(s)	1171
Aor51HI	AGCGCT	1 cut(s)	24
AoxI	GGCC	7 cut(s)	221, 406, 413, 883, 1231, 1272, 1443
ApeKI	GCWGC	2 cut(s)	287, 728
ApoI	RAATTY	4 cut(s)	184, 204, 316, 1420
AseI	ATTAAT	1 cut(s)	72
Asp700I	GAANNNNTTC	2 cut(s)	861, 1361
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	6 cut(s)	31, 221, 413, 656, 1145, 1272
AsuHPI	GGTGA	1 cut(s)	464
AsuII	TTCGAA	2 cut(s)	461, 1267
AvaII	GGWCC	3 cut(s)	31, 656, 1145
BaeI	ACNNNNGTAYC	2 cut(s)	636, 669
BanI	GGYRCC	1 cut(s)	1291
BanII	GRGCYC	6 cut(s)	441, 509, 674, 877, 1253, 1353
BauI	CACGAG	2 cut(s)	298, 1137
Bbv12I	GWGCWC	3 cut(s)	441, 1253, 1353
BbvI	GCAGC	2 cut(s)	274, 715
BccI	CCATC	6 cut(s)	494, 569, 631, 1153, 1213, 1237
BceAI	ACGGC	2 cut(s)	613, 1058
BciT130I	CCWGG	5 cut(s)	410, 972, 1115, 1239, 1442
BclI	TGATCA	2 cut(s)	484, 712
BcoDI	GTCTC	3 cut(s)	255, 552, 834
BfaI	CTAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	26
BfrI	CTTAAG	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	1036
BglII	AGATCT	1 cut(s)	961
BisI	GCNGC	2 cut(s)	288, 729
BlsI	GCNGC	2 cut(s)	289, 730
Bme1390I	CCNGG	5 cut(s)	410, 972, 1115, 1239, 1442
Bme18I	GGWCC	3 cut(s)	31, 656, 1145
BmgT120I	GGNCC	6 cut(s)	31, 221, 413, 656, 1145, 1272
BmiI	GGNNCC	8 cut(s)	32, 176, 414, 506, 627, 1282, 1293, 1317
BmrFI	CCNGG	5 cut(s)	410, 972, 1115, 1239, 1442
BmrI	ACTGGG	1 cut(s)	999
BmsI	GCATC	4 cut(s)	222, 378, 445, 993
BmuI	ACTGGG	1 cut(s)	999
BplI	GAGNNNNNCTC	2 cut(s)	235, 267
BpmI	CTGGAG	2 cut(s)	1323, 1337
Bpu14I	TTCGAA	2 cut(s)	461, 1267
Bsa29I	ATCGAT	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	836
BsaI	GGTCTC	1 cut(s)	834
BsaJI	CCNNGG	3 cut(s)	409, 1238, 1275
BsaWI	WCCGGW	1 cut(s)	1171
BsaXI	ACNNNNNCTCC	4 cut(s)	614, 644, 1372, 1402
Bsc4I	CCNNNNNNNGG	2 cut(s)	1244, 1301
Bse118I	RCCGGY	1 cut(s)	223
Bse1I	ACTGG	5 cut(s)	84, 811, 994, 1306, 1387
Bse3DI	GCAATG	5 cut(s)	398, 429, 439, 576, 1034
BseAI	TCCGGA	1 cut(s)	1171
BseBI	CCWGG	5 cut(s)	410, 972, 1115, 1239, 1442
BseCI	ATCGAT	1 cut(s)	356
BseDI	CCNNGG	3 cut(s)	409, 1238, 1275
BseGI	GGATG	8 cut(s)	237, 580, 763, 951, 980, 1201, 1248, 1351
BseLI	CCNNNNNNNGG	2 cut(s)	1244, 1301
BseMI	GCAATG	5 cut(s)	398, 429, 439, 576, 1034
BseMII	CTCAG	3 cut(s)	266, 845, 1223
BseNI	ACTGG	5 cut(s)	84, 811, 994, 1306, 1387
BseRI	GAGGAG	1 cut(s)	638
BseXI	GCAGC	2 cut(s)	274, 715
BseYI	CCCAGC	1 cut(s)	1323
BsgI	GTGCAG	1 cut(s)	714
BshFI	GGCC	7 cut(s)	223, 408, 415, 885, 1233, 1274, 1445
BshNI	GGYRCC	1 cut(s)	1291
BshVI	ATCGAT	1 cut(s)	356
BsiHKAI	GWGCWC	3 cut(s)	441, 1253, 1353
BsiSI	CCGG	2 cut(s)	224, 1172
BslFI	GGGAC	2 cut(s)	44, 1230
BslI	CCNNNNNNNGG	2 cut(s)	1244, 1301
BsmAI	GTCTC	3 cut(s)	255, 552, 834
BsmFI	GGGAC	2 cut(s)	44, 1230
BsnI	GGCC	7 cut(s)	223, 408, 415, 885, 1233, 1274, 1445
Bso31I	GGTCTC	1 cut(s)	834
Bsp119I	TTCGAA	2 cut(s)	461, 1267
Bsp1286I	GDGCHC	6 cut(s)	441, 509, 674, 877, 1253, 1353
Bsp13I	TCCGGA	1 cut(s)	1171
Bsp1407I	TGTACA	1 cut(s)	1027
Bsp143I	GATC	6 cut(s)	484, 712, 841, 933, 961, 1429
Bsp19I	CCATGG	1 cut(s)	1275
BspACI	CCGC	2 cut(s)	239, 620
BspANI	GGCC	7 cut(s)	223, 408, 415, 885, 1233, 1274, 1445
BspCNI	CTCAG	3 cut(s)	265, 844, 1222
BspDI	ATCGAT	1 cut(s)	356
BspEI	TCCGGA	1 cut(s)	1171
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	8 cut(s)	32, 176, 414, 506, 627, 1282, 1293, 1317
BspMI	ACCTGC	1 cut(s)	1036
BspPI	GGATC	1 cut(s)	1437
BspQI	GCTCTTC	1 cut(s)	1258
BspT104I	TTCGAA	2 cut(s)	461, 1267
BspT107I	GGYRCC	1 cut(s)	1291
BspTI	CTTAAG	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	834
BsrDI	GCAATG	5 cut(s)	398, 429, 439, 576, 1034
BsrFI	RCCGGY	1 cut(s)	223
BsrGI	TGTACA	1 cut(s)	1027
BsrI	ACTGG	5 cut(s)	84, 811, 994, 1306, 1387
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	3 cut(s)	409, 1238, 1275
BssMI	GATC	6 cut(s)	484, 712, 841, 933, 961, 1429
BssNI	GRCGYC	1 cut(s)	836
BssSI	CACGAG	2 cut(s)	298, 1137
BssT1I	CCWWGG	1 cut(s)	1275
Bst2BI	CACGAG	2 cut(s)	298, 1137
Bst2UI	CCWGG	5 cut(s)	410, 972, 1115, 1239, 1442
Bst4CI	ACNGT	2 cut(s)	1032, 1078
Bst6I	CTCTTC	2 cut(s)	874, 1258
BstACI	GRCGYC	1 cut(s)	836
BstAFI	CTTAAG	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstAUI	TGTACA	1 cut(s)	1027
BstBI	TTCGAA	2 cut(s)	461, 1267
BstC8I	GCNNGC	5 cut(s)	91, 225, 285, 406, 1231
BstDEI	CTNAG	6 cut(s)	252, 372, 666, 675, 831, 1209
BstDSI	CCRYGG	1 cut(s)	1275
BstF5I	GGATG	8 cut(s)	237, 580, 763, 951, 980, 1201, 1248, 1351
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	6 cut(s)	487, 715, 844, 936, 964, 1432
BstMAI	GTCTC	3 cut(s)	255, 552, 834
BstMBI	GATC	6 cut(s)	484, 712, 841, 933, 961, 1429
BstMWI	GCNNNNNNNGC	3 cut(s)	566, 1324, 1423
BstNI	CCWGG	5 cut(s)	410, 972, 1115, 1239, 1442
BstSCI	CCNGG	5 cut(s)	408, 970, 1113, 1237, 1440
BstV1I	GCAGC	2 cut(s)	274, 715
BstX2I	RGATCY	2 cut(s)	961, 1429
BstXI	CCANNNNNNTGG	1 cut(s)	1338
BstYI	RGATCY	2 cut(s)	961, 1429
Bsu15I	ATCGAT	1 cut(s)	356
BsuRI	GGCC	7 cut(s)	223, 408, 415, 885, 1233, 1274, 1445
BsuTUI	ATCGAT	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	1275
BtsCI	GGATG	8 cut(s)	237, 580, 763, 951, 980, 1201, 1248, 1351
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	5 cut(s)	91, 616, 943, 1005, 1083
BveI	ACCTGC	1 cut(s)	1036
Cac8I	GCNNGC	5 cut(s)	91, 225, 285, 406, 1231
CaiI	CAGNNNCTG	1 cut(s)	1432
CciI	TCATGA	1 cut(s)	550
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	6 cut(s)	31, 221, 413, 656, 1145, 1272
ClaI	ATCGAT	1 cut(s)	356
Csp6I	GTAC	4 cut(s)	645, 773, 968, 1028
CviAII	CATG	5 cut(s)	55, 488, 551, 866, 1276
CviQI	GTAC	4 cut(s)	645, 773, 968, 1028
DdeI	CTNAG	6 cut(s)	252, 372, 666, 675, 831, 1209
DpnI	GATC	6 cut(s)	486, 714, 843, 935, 963, 1431
DpnII	GATC	6 cut(s)	484, 712, 841, 933, 961, 1429
DraI	TTTAAA	1 cut(s)	1098
Eam1104I	CTCTTC	2 cut(s)	874, 1258
EarI	CTCTTC	2 cut(s)	874, 1258
Ecl136II	GAGCTC	3 cut(s)	439, 1251, 1351
Eco130I	CCWWGG	1 cut(s)	1275
Eco147I	AGGCCT	1 cut(s)	1233
Eco24I	GRGCYC	6 cut(s)	441, 509, 674, 877, 1253, 1353
Eco31I	GGTCTC	1 cut(s)	834
Eco32I	GATATC	1 cut(s)	1126
Eco47I	GGWCC	3 cut(s)	31, 656, 1145
Eco47III	AGCGCT	1 cut(s)	24
Eco53kI	GAGCTC	3 cut(s)	439, 1251, 1351
Eco57I	CTGAAG	1 cut(s)	1115
EcoICRI	GAGCTC	3 cut(s)	439, 1251, 1351
EcoO109I	RGGNCCY	2 cut(s)	413, 656
EcoRII	CCWGG	5 cut(s)	408, 970, 1113, 1237, 1440
EcoRV	GATATC	1 cut(s)	1126
EcoT14I	CCWWGG	1 cut(s)	1275
EcoT22I	ATGCAT	1 cut(s)	1182
EcoT38I	GRGCYC	6 cut(s)	441, 509, 674, 877, 1253, 1353
ErhI	CCWWGG	1 cut(s)	1275
FaeI	CATG	5 cut(s)	58, 491, 554, 869, 1279
FalI	AAGNNNNNCTT	4 cut(s)	1113, 1145, 1218, 1250
FaqI	GGGAC	2 cut(s)	44, 1230
FatI	CATG	5 cut(s)	54, 487, 550, 865, 1275
FbaI	TGATCA	2 cut(s)	484, 712
Fnu4HI	GCNGC	2 cut(s)	288, 729
FokI	GGATG	8 cut(s)	244, 587, 770, 958, 987, 1188, 1255, 1358
FriOI	GRGCYC	6 cut(s)	441, 509, 674, 877, 1253, 1353
Fsp4HI	GCNGC	2 cut(s)	288, 729
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	2 cut(s)	288, 729
GsaI	CCCAGC	1 cut(s)	1327
GsuI	CTGGAG	2 cut(s)	1323, 1337
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	7 cut(s)	223, 408, 415, 885, 1233, 1274, 1445
HapII	CCGG	2 cut(s)	224, 1172
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	836
Hin1II	CATG	5 cut(s)	58, 491, 554, 869, 1279
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HpaII	CCGG	2 cut(s)	224, 1172
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	1 cut(s)	695
Hpy188I	TCNGA	6 cut(s)	81, 595, 834, 841, 923, 1258
Hpy188III	TCNNGA	7 cut(s)	350, 551, 959, 1137, 1172, 1215, 1354
Hpy8I	GTNNAC	1 cut(s)	695
HpyAV	CCTTC	9 cut(s)	669, 772, 918, 988, 1139, 1158, 1244, 1263, 1329
HpyCH4III	ACNGT	2 cut(s)	1032, 1078
HpyCH4IV	ACGT	1 cut(s)	836
HpyF10VI	GCNNNNNNNGC	3 cut(s)	566, 1324, 1423
HpyF3I	CTNAG	6 cut(s)	252, 372, 666, 675, 831, 1209
HpySE526I	ACGT	1 cut(s)	836
Hsp92I	GRCGYC	1 cut(s)	836
Hsp92II	CATG	5 cut(s)	58, 491, 554, 869, 1279
HspAI	GCGC	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	1171
KroI	GCCGGC	1 cut(s)	223
KroNI	GCCGGC	1 cut(s)	225
Ksp22I	TGATCA	2 cut(s)	484, 712
Kzo9I	GATC	6 cut(s)	484, 712, 841, 933, 961, 1429
LguI	GCTCTTC	1 cut(s)	1258
LmnI	GCTCC	6 cut(s)	504, 625, 782, 1248, 1315, 1356
Lsp1109I	GCAGC	2 cut(s)	274, 715
LweI	GCATC	4 cut(s)	222, 378, 445, 993
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	836
MaeIII	GTNAC	4 cut(s)	65, 584, 985, 1134
MalI	GATC	6 cut(s)	486, 714, 843, 935, 963, 1431
MboI	GATC	6 cut(s)	484, 712, 841, 933, 961, 1429
MboII	GAAGA	8 cut(s)	535, 654, 866, 891, 943, 947, 1146, 1245
MflI	RGATCY	2 cut(s)	961, 1429
MhlI	GDGCHC	6 cut(s)	441, 509, 674, 877, 1253, 1353
MluCI	AATT	5 cut(s)	111, 184, 204, 316, 1420
MlyI	GAGTC	5 cut(s)	17, 370, 544, 599, 927
MmeI	TCCRAC	2 cut(s)	152, 1123
Mph1103I	ATGCAT	1 cut(s)	1182
MroI	TCCGGA	1 cut(s)	1171
MroNI	GCCGGC	1 cut(s)	223
MroXI	GAANNNNTTC	2 cut(s)	861, 1361
MseI	TTAA	4 cut(s)	72, 513, 1020, 1097
MspA1I	CMGCKG	1 cut(s)	263
MspCI	CTTAAG	1 cut(s)	512
MspI	CCGG	2 cut(s)	224, 1172
MspR9I	CCNGG	5 cut(s)	410, 972, 1115, 1239, 1442
MvaI	CCWGG	5 cut(s)	410, 972, 1115, 1239, 1442
MwoI	GCNNNNNNNGC	3 cut(s)	566, 1324, 1423
NaeI	GCCGGC	1 cut(s)	225
NcoI	CCATGG	1 cut(s)	1275
NdeII	GATC	6 cut(s)	484, 712, 841, 933, 961, 1429
NgoMIV	GCCGGC	1 cut(s)	223
NlaIII	CATG	5 cut(s)	58, 491, 554, 869, 1279
NlaIV	GGNNCC	8 cut(s)	32, 176, 414, 506, 627, 1282, 1293, 1317
NmuCI	GTSAC	2 cut(s)	65, 1134
NsiI	ATGCAT	1 cut(s)	1182
NspV	TTCGAA	2 cut(s)	461, 1267
PagI	TCATGA	1 cut(s)	550
PceI	AGGCCT	1 cut(s)	1233
PciSI	GCTCTTC	1 cut(s)	1258
PdiI	GCCGGC	1 cut(s)	225
PdmI	GAANNNNTTC	2 cut(s)	861, 1361
PfeI	GAWTC	6 cut(s)	124, 266, 353, 746, 1081, 1308
PfoI	TCCNGGA	1 cut(s)	1113
PkrI	GCNGC	2 cut(s)	289, 730
PleI	GAGTC	5 cut(s)	16, 369, 543, 598, 926
PpsI	GAGTC	5 cut(s)	16, 369, 543, 598, 926
PpuMI	RGGWCCY	1 cut(s)	656
PshBI	ATTAAT	1 cut(s)	72
Psp124BI	GAGCTC	3 cut(s)	441, 1253, 1353
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	5 cut(s)	408, 970, 1113, 1237, 1440
PspFI	CCCAGC	1 cut(s)	1323
PspGI	CCWGG	5 cut(s)	408, 970, 1113, 1237, 1440
PspN4I	GGNNCC	8 cut(s)	32, 176, 414, 506, 627, 1282, 1293, 1317
PspPI	GGNCC	6 cut(s)	31, 221, 413, 656, 1145, 1272
PspPPI	RGGWCCY	1 cut(s)	656
PstNI	CAGNNNCTG	1 cut(s)	1432
PsuI	RGATCY	2 cut(s)	961, 1429
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	4 cut(s)	646, 774, 969, 1029
RsaNI	GTAC	4 cut(s)	645, 773, 968, 1028
SacI	GAGCTC	3 cut(s)	441, 1253, 1353
SapI	GCTCTTC	1 cut(s)	1258
SaqAI	TTAA	4 cut(s)	72, 513, 1020, 1097
SatI	GCNGC	2 cut(s)	288, 729
Sau3AI	GATC	6 cut(s)	484, 712, 841, 933, 961, 1429
Sau96I	GGNCC	6 cut(s)	31, 221, 413, 656, 1145, 1272
SchI	GAGTC	5 cut(s)	17, 370, 544, 599, 927
ScrFI	CCNGG	5 cut(s)	410, 972, 1115, 1239, 1442
SduI	GDGCHC	6 cut(s)	441, 509, 674, 877, 1253, 1353
SfaNI	GCATC	4 cut(s)	222, 378, 445, 993
SfuI	TTCGAA	2 cut(s)	461, 1267
SinI	GGWCC	3 cut(s)	31, 656, 1145
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	5 cut(s)	111, 184, 204, 316, 1420
SseBI	AGGCCT	1 cut(s)	1233
SsiI	CCGC	2 cut(s)	239, 620
SspMI	CTAG	1 cut(s)	291
SstI	GAGCTC	3 cut(s)	441, 1253, 1353
StuI	AGGCCT	1 cut(s)	1233
StyD4I	CCNGG	5 cut(s)	408, 970, 1113, 1237, 1440
StyI	CCWWGG	1 cut(s)	1275
TaaI	ACNGT	2 cut(s)	1032, 1078
TaiI	ACGT	1 cut(s)	839
TaqI	TCGA	7 cut(s)	188, 356, 461, 877, 1157, 1267, 1410
TasI	AATT	5 cut(s)	111, 184, 204, 316, 1420
TatI	WGTACW	1 cut(s)	1027
TfiI	GAWTC	6 cut(s)	124, 266, 353, 746, 1081, 1308
Tru1I	TTAA	4 cut(s)	72, 513, 1020, 1097
Tru9I	TTAA	4 cut(s)	72, 513, 1020, 1097
TscAI	CASTG	5 cut(s)	91, 616, 943, 1005, 1083
TseFI	GTSAC	2 cut(s)	65, 1134
TseI	GCWGC	2 cut(s)	287, 728
Tsp45I	GTSAC	2 cut(s)	65, 1134
TspGWI	ACGGA	1 cut(s)	730
TspRI	CASTG	5 cut(s)	91, 616, 943, 1005, 1083
Vha464I	CTTAAG	1 cut(s)	512
VpaK11BI	GGWCC	3 cut(s)	31, 656, 1145
VspI	ATTAAT	1 cut(s)	72
XapI	RAATTY	4 cut(s)	184, 204, 316, 1420
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1373
XmnI	GAANNNNTTC	2 cut(s)	861, 1361
XspI	CTAG	1 cut(s)	291
ZraI	GACGTC	1 cut(s)	837
Zsp2I	ATGCAT	1 cut(s)	1182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.