Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002365.1

Orthogroup ID

OG0002622

Physical Location & Seq

Genomic Coordinates Forward (+)

37731 .. 39447

Gene Structure 1717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002365.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgggttccttgtctggaatcctccaacgacctttaatcgccaccgccgctgttggctttgcttcattttcttccgacttctctctcatactgccctctcacaaatccaaatccaacgactcctcctcggatttatcaagttcaacaacatctttgtcattacacattttgctttctaagcttgcaaacctttcctttatctctagaattcaagtacctgttcccaccattaacttcccaattcccaattcccattgcaattccctctattcttcggttgcatcttcccccactcttcttaagctctatcactttgcatacttggccaaagcacccaacccagctgcatgtaagcatgatatatcaccatctgcttccatccataagcatgttatatcaccatttgcttccgtccctgagcgtgatatatcaccatcaacaaagatgaggacagtggtggttttgctgggatggttagaagcaaagcgtatgccgactggcagaatgctataccctctagagggtgccaagataactccagggccttctcaaaggaaatacgcaacgttaagaggtaaagaccgtaccagacggtttgtgcctctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF829

Protein Analysis

202

Amino Acids

21.88

Weight (kDa)

10.25

Isoelectric Point (pI)

60.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19970 AT3G19970 AT3G19970 AT3G19970 AT3G19970
fragaria_vesca	FvH4_4g37150 FvH4_7g21480
malus_domestica	MD13G1003100.v1.1
prunus_persica	Prupe.1G349300_v2.0.a1
pyrus_communis	pycom13g00260 pycom16g00170
rosa_chinensis	RchiOBHm_Chr1g0365791 RchiOBHm_Chr4g0409441 RchiOBHm_Chr4g0446951
rosa_laevigata	RLG00000005618 RLG00000027396
rosa_multiflora	Rmu_co8345695.1_g000001 Rmu_sc0001753.1_g000006 Rmu_sc0002365.1_g000009 Rmu_sc0004311.1_g000013 Rmu_sc0011539.1_g000002 Rmu_sc0034955.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290870 Rroxscaffold_5G00387280
rosa_rugosa	Rorug01G0324300 Rorug03G0341000 Rorug03G0341000 Rorug04G0376500
rosa_samantha	Rh1AG333200 Rh1BG294100 Rh1CG310800 Rh1DG326500 Rh4AG437900 Rh4BG446800 Rh4CG464100 Rh4DG445600
rosa_wichuraiana	Rw0G014000 Rw1G006220 Rw1G029570 Rw4G037450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	524
AciI	CCGC	2 cut(s)	45, 48
AclI	AACGTT	1 cut(s)	566
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	1 cut(s)	207
AfaI	GTAC	2 cut(s)	216, 586
AfiI	CCNNNNNNNGG	2 cut(s)	520, 521
AflII	CTTAAG	1 cut(s)	299
AgsI	TTSAA	2 cut(s)	144, 212
AjnI	CCWGG	1 cut(s)	538
AjuI	GAANNNNNNNTTGG	2 cut(s)	232, 264
AluBI	AGCT	3 cut(s)	181, 304, 344
AluI	AGCT	3 cut(s)	181, 304, 344
AoxI	GGCC	2 cut(s)	324, 542
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	542
AsuHPI	GGTGA	3 cut(s)	357, 390, 423
BalI	TGGCCA	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	524
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	4 cut(s)	376, 386, 442, 465
BciT130I	CCWGG	1 cut(s)	540
BfaI	CTAG	2 cut(s)	204, 518
BfrI	CTTAAG	1 cut(s)	299
BisI	GCNGC	2 cut(s)	48, 345
BlsI	GCNGC	2 cut(s)	49, 346
Bme1390I	CCNGG	1 cut(s)	540
BmgT120I	GGNCC	1 cut(s)	542
BmiI	GGNNCC	2 cut(s)	7, 526
BmrFI	CCNGG	1 cut(s)	540
BmsI	GCATC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	522
Bpu10I	CCTNAGC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	126, 539
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	520, 521
Bse1I	ACTGG	1 cut(s)	502
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	126, 539
BseGI	GGATG	2 cut(s)	378, 476
BseLI	CCNNNNNNNGG	2 cut(s)	520, 521
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	502
BseRI	GAGGAG	2 cut(s)	112, 115
BseXI	GCAGC	1 cut(s)	331
BseYI	CCCAGC	2 cut(s)	340, 466
BshFI	GGCC	2 cut(s)	326, 544
BshNI	GGYRCC	1 cut(s)	524
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	2 cut(s)	520, 521
BsmFI	GGGAC	1 cut(s)	398
BsmI	GAATGC	1 cut(s)	510
BsnI	GGCC	2 cut(s)	326, 544
BspACI	CCGC	2 cut(s)	45, 48
BspANI	GGCC	2 cut(s)	326, 544
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	7, 526
BspT107I	GGYRCC	1 cut(s)	524
BspTI	CTTAAG	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	2 cut(s)	126, 539
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	3 cut(s)	454, 584, 594
Bst6I	CTCTTC	1 cut(s)	300
BstAFI	CTTAAG	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	177, 417
BstF5I	GGATG	2 cut(s)	378, 476
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 178, 323
BstNI	CCWGG	1 cut(s)	540
BstNSI	RCATGY	2 cut(s)	351, 392
BstSCI	CCNGG	1 cut(s)	538
BstV1I	GCAGC	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	326, 544
BtsCI	GGATG	2 cut(s)	378, 476
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	542
Csp6I	GTAC	2 cut(s)	215, 585
CviAII	CATG	3 cut(s)	348, 356, 389
CviJI	RGCY	6 cut(s)	57, 181, 304, 326, 344, 544
CviKI_1	RGCY	6 cut(s)	57, 181, 304, 326, 344, 544
CviQI	GTAC	2 cut(s)	215, 585
DdeI	CTNAG	2 cut(s)	177, 417
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
EcoO109I	RGGNCCY	1 cut(s)	542
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	538
FaeI	CATG	3 cut(s)	351, 359, 392
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	3 cut(s)	347, 355, 388
Fnu4HI	GCNGC	2 cut(s)	48, 345
FokI	GGATG	2 cut(s)	365, 483
Fsp4HI	GCNGC	2 cut(s)	48, 345
FspBI	CTAG	2 cut(s)	204, 518
GluI	GCNGC	2 cut(s)	48, 345
GsaI	CCCAGC	2 cut(s)	344, 470
GsuI	CTGGAG	1 cut(s)	522
HaeIII	GGCC	2 cut(s)	326, 544
Hin1II	CATG	3 cut(s)	351, 359, 392
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	2 cut(s)	18, 119
HphI	GGTGA	3 cut(s)	357, 390, 423
Hpy188I	TCNGA	3 cut(s)	76, 130, 608
Hpy188III	TCNNGA	3 cut(s)	15, 204, 518
HpyAV	CCTTC	1 cut(s)	555
HpyCH4III	ACNGT	3 cut(s)	454, 584, 594
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	5 cut(s)	185, 258, 281, 317, 347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 178, 323
HpyF3I	CTNAG	2 cut(s)	177, 417
HpySE526I	ACGT	1 cut(s)	566
Hsp92II	CATG	3 cut(s)	351, 359, 392
LpnPI	CCDG	8 cut(s)	231, 354, 429, 452, 483, 525, 552, 601
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	1 cut(s)	290
MaeI	CTAG	2 cut(s)	204, 518
MaeII	ACGT	1 cut(s)	566
MboII	GAAGA	4 cut(s)	63, 264, 276, 287
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	4 cut(s)	207, 240, 247, 259
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	3 cut(s)	49, 99, 138
MnlI	CCTC	9 cut(s)	32, 106, 133, 136, 275, 441, 514, 525, 566
Mox20I	TGGCCA	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	4 cut(s)	35, 231, 300, 569
MslI	CAYNNNNRTG	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	326
MspA1I	CMGCKG	2 cut(s)	50, 344
MspCI	CTTAAG	1 cut(s)	299
MspR9I	CCNGG	1 cut(s)	540
Mva1269I	GAATGC	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	3 cut(s)	47, 178, 323
NlaIII	CATG	3 cut(s)	351, 359, 392
NlaIV	GGNNCC	2 cut(s)	7, 526
NspI	RCATGY	2 cut(s)	351, 392
PctI	GAATGC	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	2 cut(s)	49, 346
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Psp1406I	AACGTT	1 cut(s)	566
Psp6I	CCWGG	1 cut(s)	538
PspFI	CCCAGC	2 cut(s)	340, 466
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	2 cut(s)	7, 526
PspPI	GGNCC	1 cut(s)	542
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	2 cut(s)	216, 586
RsaNI	GTAC	2 cut(s)	215, 585
RseI	CAYNNNNRTG	1 cut(s)	387
SaqAI	TTAA	4 cut(s)	35, 231, 300, 569
SatI	GCNGC	2 cut(s)	48, 345
Sau96I	GGNCC	1 cut(s)	542
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	540
SetI	ASST	8 cut(s)	34, 183, 192, 220, 306, 346, 569, 577
SfaNI	GCATC	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	4 cut(s)	207, 240, 247, 259
SsiI	CCGC	2 cut(s)	45, 48
SspMI	CTAG	2 cut(s)	204, 518
StyD4I	CCNGG	1 cut(s)	538
TaaI	ACNGT	3 cut(s)	454, 584, 594
TaiI	ACGT	1 cut(s)	569
TasI	AATT	4 cut(s)	207, 240, 247, 259
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	4 cut(s)	35, 231, 300, 569
Tru9I	TTAA	4 cut(s)	35, 231, 300, 569
TscAI	CASTG	1 cut(s)	459
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	54
TspGWI	ACGGA	1 cut(s)	400
TspRI	CASTG	1 cut(s)	459
Vha464I	CTTAAG	1 cut(s)	299
XapI	RAATTY	1 cut(s)	207
XbaI	TCTAGA	2 cut(s)	203, 517
XceI	RCATGY	2 cut(s)	351, 392
XspI	CTAG	2 cut(s)	204, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.