FvH4_7g21480

Eukaryotic protein of unknown function (DUF829)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002622
Physical Location & Seq
Reverse (-)
17182289 .. 17183209
921 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21480.t1

Sequence Viewer

Length: 921 bp
ATGGTTTCCTTGTCTGAAATGCTTCAACGACCTCTGATTGCTGCCGCCGCTGTTGGCTTTGTTTCATTTTCTTCCGACTTCTATTTCATGCTGCCCTCTCACAAACCAAACAACTTTTCTACTCGTACCTCCGACTTATCAATTTCTTCCTCATTAAGCATTTCAGACATTTCGGCTTCTAAGCTTGCAAATTTGTCCTTCGTCTCCAGAATTCGAGTACCAATTCCCAACATTAACTTCCCAATTCCCAGTCCCCACTGCAATTCTGGTCCCAAGTTACTATATTCGTTTGCATCTTCCCCTACTCTCCTTAAGTTGTATCACTCTGCAGACTTGAGCAAGGCGCCAAACCCAACTGCATATAATCATGATGTATTATCATCTGCTTCCGTACCTGATGTCTCCTACAGATGGCATTTGCCTGAGCCAAATGCTCTAGATGTTTCCGGTACCGCTGATTGCTCATCAGCAAAGATGAGGACTGTGGTGGTTTTGCTGGGATGGTTAGGAGCAAAGCAAAAGCATCTTACGAGGTATGCCGAGTGGTATACTTCGCAGGGGTTTCACGCCATTACATTTACTTTACCTATGGCTGAGATTCTTAAATACCAGCCCGGTGGTAAAGTTGAAGAGCGCATTGACTCTCTTGTGACTCATTTGGCTGATTGGTTAGAAGAGGAGCAGGGAAAGAACCTGGTTTTTCATACATTTAGCAACACTGGATGGTTAACTTATGGCATAATGCTTGAGAAGTTTCAGAAGCACGATCCTTCTGTAATGGGCAGGATTCGGGGCTGCGTTGTGGATTCAGCACCTGTTGCGGCACCAGACCCGCATGTCTGGGCGTCTGGTTTCTCTGCAGCCTTTCTGAAAAAGCATAGTGTAGCAACAAAAGGAACGGCAGGCGCTAGTGATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF829

Protein Analysis

307

Amino Acids

33.43

Weight (kDa)

8.35

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF829 PF05705 161 - 295 4.4e-37 Eukaryotic protein of unknown function (DUF829)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 836
Acc65I GGTACC 1 cut(s) 449
AccB1I GGYRCC 3 cut(s) 343, 449, 823
AccI GTMKAC 1 cut(s) 548
AciI CCGC 5 cut(s) 45, 48, 453, 821, 833
AclWI GGATC 1 cut(s) 761
AcsI RAATTY 2 cut(s) 190, 210
AcyI GRCGYC 2 cut(s) 344, 845
AfaI GTAC 4 cut(s) 127, 219, 393, 451
AfiI CCNNNNNNNGG 1 cut(s) 411
AflII CTTAAG 1 cut(s) 311
AgsI TTSAA 2 cut(s) 26, 629
AjnI CCWGG 1 cut(s) 693
AjuI GAANNNNNNNTTGG 4 cut(s) 100, 132, 221, 253
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw26I GTCTC 2 cut(s) 208, 406
AlwI GGATC 1 cut(s) 761
AlwNI CAGNNNCTG 1 cut(s) 815
ApeKI GCWGC 4 cut(s) 41, 91, 795, 860
ApoI RAATTY 2 cut(s) 190, 210
Asp700I GAANNNNTTC 1 cut(s) 21
Asp718I GGTACC 1 cut(s) 449
AspLEI GCGC 3 cut(s) 346, 636, 908
AspS9I GGNCC 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 615
AvaII GGWCC 1 cut(s) 269
BanI GGYRCC 3 cut(s) 343, 449, 823
BbvI GCAGC 4 cut(s) 28, 78, 782, 872
BccI CCATC 3 cut(s) 405, 495, 717
BceAI ACGGC 1 cut(s) 915
BciT130I CCWGG 1 cut(s) 695
BclI TGATCA 1 cut(s) 913
BcnI CCSGG 1 cut(s) 615
BcoDI GTCTC 2 cut(s) 208, 406
BfaI CTAG 2 cut(s) 437, 909
BfmI CTRYAG 3 cut(s) 327, 406, 858
BfoI RGCGCY 2 cut(s) 347, 909
BfrI CTTAAG 1 cut(s) 311
BisI GCNGC 7 cut(s) 42, 45, 48, 92, 796, 822, 861
BlsI GCNGC 7 cut(s) 43, 46, 49, 93, 797, 823, 862
Bme1390I CCNGG 2 cut(s) 615, 695
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 4 cut(s) 271, 345, 451, 825
BmrFI CCNGG 2 cut(s) 615, 695
BmrI ACTGGG 1 cut(s) 243
BmsI GCATC 2 cut(s) 302, 532
BmuI ACTGGG 1 cut(s) 243
BpmI CTGGAG 1 cut(s) 190
Bpu10I CCTNAGC 1 cut(s) 423
BpuEI CTTGAG 2 cut(s) 355, 767
BpuMI CCSGG 1 cut(s) 615
BsaHI GRCGYC 2 cut(s) 344, 845
BsaWI WCCGGW 1 cut(s) 446
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse1I ACTGG 2 cut(s) 249, 724
BseBI CCWGG 1 cut(s) 695
BseGI GGATG 2 cut(s) 506, 728
BseLI CCNNNNNNNGG 1 cut(s) 411
BseMII CTCAG 2 cut(s) 414, 585
BseNI ACTGG 2 cut(s) 249, 724
BseRI GAGGAG 1 cut(s) 692
BseXI GCAGC 4 cut(s) 28, 78, 782, 872
BseYI CCCAGC 1 cut(s) 496
BshNI GGYRCC 3 cut(s) 343, 449, 823
BsiSI CCGG 2 cut(s) 447, 615
BslFI GGGAC 2 cut(s) 237, 255
BslI CCNNNNNNNGG 1 cut(s) 411
BsmAI GTCTC 2 cut(s) 208, 406
BsmBI CGTCTC 1 cut(s) 208
BsmFI GGGAC 2 cut(s) 237, 255
Bsp143I GATC 2 cut(s) 766, 913
BspACI CCGC 5 cut(s) 45, 48, 453, 821, 833
BspCNI CTCAG 2 cut(s) 415, 586
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 4 cut(s) 271, 345, 451, 825
BspMAI CTGCAG 2 cut(s) 331, 862
BspPI GGATC 1 cut(s) 761
BspQI GCTCTTC 1 cut(s) 624
BspT107I GGYRCC 3 cut(s) 343, 449, 823
BspTI CTTAAG 1 cut(s) 311
BsrI ACTGG 2 cut(s) 249, 724
BssMI GATC 2 cut(s) 766, 913
BssNAI GTATAC 1 cut(s) 549
BssNI GRCGYC 2 cut(s) 344, 845
Bst1107I GTATAC 1 cut(s) 549
Bst2UI CCWGG 1 cut(s) 695
Bst4CI ACNGT 1 cut(s) 484
Bst6I CTCTTC 2 cut(s) 624, 669
BstACI GRCGYC 2 cut(s) 344, 845
BstAFI CTTAAG 1 cut(s) 311
BstAPI GCANNNNNTGC 1 cut(s) 818
BstC8I GCNNGC 2 cut(s) 186, 904
BstDEI CTNAG 3 cut(s) 180, 423, 594
BstF5I GGATG 2 cut(s) 506, 728
BstH2I RGCGCY 2 cut(s) 347, 909
BstHHI GCGC 3 cut(s) 346, 636, 908
BstKTI GATC 2 cut(s) 769, 916
BstMAI GTCTC 2 cut(s) 208, 406
BstMBI GATC 2 cut(s) 766, 913
BstMWI GCNNNNNNNGC 2 cut(s) 47, 818
BstNI CCWGG 1 cut(s) 695
BstNSI RCATGY 1 cut(s) 839
BstSCI CCNGG 2 cut(s) 613, 693
BstSFI CTRYAG 3 cut(s) 327, 406, 858
BstV1I GCAGC 4 cut(s) 28, 78, 782, 872
BstXI CCANNNNNNTGG 1 cut(s) 617
BstZ17I GTATAC 1 cut(s) 549
BtsCI GGATG 2 cut(s) 506, 728
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 2 cut(s) 256, 717
Cac8I GCNNGC 2 cut(s) 186, 904
CaiI CAGNNNCTG 1 cut(s) 815
CciI TCATGA 1 cut(s) 367
CfoI GCGC 3 cut(s) 346, 636, 908
Cfr13I GGNCC 1 cut(s) 269
CseI GACGC 1 cut(s) 834
CsiI ACCWGGT 1 cut(s) 693
Csp6I GTAC 4 cut(s) 126, 218, 392, 450
CviAII CATG 3 cut(s) 88, 368, 836
CviJI RGCY 9 cut(s) 57, 176, 184, 427, 593, 613, 662, 795, 863
CviKI_1 RGCY 9 cut(s) 57, 176, 184, 427, 593, 613, 662, 795, 863
CviQI GTAC 4 cut(s) 126, 218, 392, 450
DdeI CTNAG 3 cut(s) 180, 423, 594
DinI GGCGCC 1 cut(s) 345
DpnI GATC 2 cut(s) 768, 915
DpnII GATC 2 cut(s) 766, 913
DrdI GACNNNNNNGTC 1 cut(s) 836
DseDI GACNNNNNNGTC 1 cut(s) 836
Eam1104I CTCTTC 2 cut(s) 624, 669
EarI CTCTTC 2 cut(s) 624, 669
Eco47I GGWCC 1 cut(s) 269
EcoRI GAATTC 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 693
EgeI GGCGCC 1 cut(s) 345
EheI GGCGCC 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 3 cut(s) 91, 371, 839
FaqI GGGAC 2 cut(s) 237, 255
FatI CATG 3 cut(s) 87, 367, 835
FauI CCCGC 1 cut(s) 840
FbaI TGATCA 1 cut(s) 913
FblI GTMKAC 1 cut(s) 548
Fnu4HI GCNGC 7 cut(s) 42, 45, 48, 92, 796, 822, 861
FokI GGATG 2 cut(s) 513, 735
Fsp4HI GCNGC 7 cut(s) 42, 45, 48, 92, 796, 822, 861
FspBI CTAG 2 cut(s) 437, 909
GlaI GCGC 3 cut(s) 345, 635, 907
GluI GCNGC 7 cut(s) 42, 45, 48, 92, 796, 822, 861
GsaI CCCAGC 1 cut(s) 500
GsuI CTGGAG 1 cut(s) 190
HaeII RGCGCY 2 cut(s) 347, 909
HapII CCGG 2 cut(s) 447, 615
HgaI GACGC 1 cut(s) 834
HhaI GCGC 3 cut(s) 346, 636, 908
Hin1I GRCGYC 2 cut(s) 344, 845
Hin1II CATG 3 cut(s) 91, 371, 839
Hin6I GCGC 3 cut(s) 344, 634, 906
HinP1I GCGC 3 cut(s) 344, 634, 906
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 5 cut(s) 598, 641, 652, 787, 806
HpaI GTTAAC 1 cut(s) 729
HpaII CCGG 2 cut(s) 447, 615
Hpy166II GTNNAC 2 cut(s) 549, 729
Hpy188I TCNGA 7 cut(s) 16, 36, 76, 133, 166, 759, 870
Hpy188III TCNNGA 3 cut(s) 207, 368, 437
Hpy8I GTNNAC 2 cut(s) 549, 729
HpyAV CCTTC 2 cut(s) 208, 780
HpyCH4III ACNGT 1 cut(s) 484
HpyCH4V TGCA 6 cut(s) 188, 261, 293, 329, 359, 860
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 818
HpyF3I CTNAG 3 cut(s) 180, 423, 594
Hsp92I GRCGYC 2 cut(s) 344, 845
Hsp92II CATG 3 cut(s) 91, 371, 839
HspAI GCGC 3 cut(s) 344, 634, 906
KasI GGCGCC 1 cut(s) 343
KpnI GGTACC 1 cut(s) 453
Ksp22I TGATCA 1 cut(s) 913
KspAI GTTAAC 1 cut(s) 729
Kzo9I GATC 2 cut(s) 766, 913
LguI GCTCTTC 1 cut(s) 624
LmnI GCTCC 2 cut(s) 509, 679
Lsp1109I GCAGC 4 cut(s) 28, 78, 782, 872
LweI GCATC 2 cut(s) 302, 532
MabI ACCWGGT 1 cut(s) 693
MaeI CTAG 2 cut(s) 437, 909
MaeIII GTNAC 2 cut(s) 276, 649
MalI GATC 2 cut(s) 768, 915
MboI GATC 2 cut(s) 766, 913
MboII GAAGA 5 cut(s) 63, 138, 288, 641, 686
MluCI AATT 6 cut(s) 141, 190, 210, 222, 243, 262
Mly113I GGCGCC 1 cut(s) 344
MlyI GAGTC 2 cut(s) 635, 646
MmeI TCCRAC 2 cut(s) 99, 156
MnlI CCTC 7 cut(s) 42, 106, 139, 160, 471, 525, 670
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 5 cut(s) 155, 234, 312, 603, 728
MspA1I CMGCKG 2 cut(s) 50, 455
MspCI CTTAAG 1 cut(s) 311
MspI CCGG 2 cut(s) 447, 615
MspR9I CCNGG 2 cut(s) 615, 695
MvaI CCWGG 1 cut(s) 695
MwoI GCNNNNNNNGC 2 cut(s) 47, 818
NarI GGCGCC 1 cut(s) 344
NciI CCSGG 1 cut(s) 615
NdeII GATC 2 cut(s) 766, 913
NlaIII CATG 3 cut(s) 91, 371, 839
NlaIV GGNNCC 4 cut(s) 271, 345, 451, 825
NmeAIII GCCGAG 1 cut(s) 565
NmuCI GTSAC 1 cut(s) 649
NspI RCATGY 1 cut(s) 839
PagI TCATGA 1 cut(s) 367
PciSI GCTCTTC 1 cut(s) 624
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 3 cut(s) 598, 787, 806
PkrI GCNGC 7 cut(s) 43, 46, 49, 93, 797, 823, 862
PleI GAGTC 2 cut(s) 635, 646
PluTI GGCGCC 1 cut(s) 347
PpsI GAGTC 2 cut(s) 635, 646
Psp6I CCWGG 1 cut(s) 693
PspFI CCCAGC 1 cut(s) 496
PspGI CCWGG 1 cut(s) 693
PspN4I GGNNCC 4 cut(s) 271, 345, 451, 825
PspPI GGNCC 1 cut(s) 269
PstI CTGCAG 2 cut(s) 331, 862
PstNI CAGNNNCTG 1 cut(s) 815
RsaI GTAC 4 cut(s) 127, 219, 393, 451
RsaNI GTAC 4 cut(s) 126, 218, 392, 450
SapI GCTCTTC 1 cut(s) 624
SaqAI TTAA 5 cut(s) 155, 234, 312, 603, 728
SatI GCNGC 7 cut(s) 42, 45, 48, 92, 796, 822, 861
Sau3AI GATC 2 cut(s) 766, 913
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 2 cut(s) 635, 646
ScrFI CCNGG 2 cut(s) 615, 695
SetI ASST 8 cut(s) 34, 131, 186, 397, 536, 589, 696, 817
SexAI ACCWGGT 1 cut(s) 693
SfaNI GCATC 2 cut(s) 302, 532
SfcI CTRYAG 3 cut(s) 327, 406, 858
SfoI GGCGCC 1 cut(s) 345
SinI GGWCC 1 cut(s) 269
SmlI CTYRAG 3 cut(s) 311, 334, 746
SmoI CTYRAG 3 cut(s) 311, 334, 746
Sse9I AATT 6 cut(s) 141, 190, 210, 222, 243, 262
SsiI CCGC 5 cut(s) 45, 48, 453, 821, 833
SspDI GGCGCC 1 cut(s) 343
SspMI CTAG 2 cut(s) 437, 909
StyD4I CCNGG 2 cut(s) 613, 693
TaaI ACNGT 1 cut(s) 484
TaqI TCGA 1 cut(s) 214
TasI AATT 6 cut(s) 141, 190, 210, 222, 243, 262
TauI GCSGC 3 cut(s) 47, 50, 824
TfiI GAWTC 3 cut(s) 598, 787, 806
Tru1I TTAA 5 cut(s) 155, 234, 312, 603, 728
Tru9I TTAA 5 cut(s) 155, 234, 312, 603, 728
TscAI CASTG 2 cut(s) 263, 724
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 4 cut(s) 41, 91, 795, 860
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 3 cut(s) 54, 76, 692
TspGWI ACGGA 1 cut(s) 379
TspRI CASTG 2 cut(s) 263, 724
Vha464I CTTAAG 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 2 cut(s) 190, 210
XbaI TCTAGA 1 cut(s) 436
XceI RCATGY 1 cut(s) 839
XcmI CCANNNNNNNNNTGG 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 548
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 2 cut(s) 437, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.