FvH4_4g37150

Eukaryotic protein of unknown function (DUF829)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002622
Physical Location & Seq
Forward (+)
33743878 .. 33747005
3128 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g37150.t1

Sequence Viewer

Length: 1281 bp
ATGGGTTCCTTGTCCGGAATCCTTCAACGGCCTCTGATCGCCGCCGCCGCTGTTGGCTTTGCTTCTTTTTCTTCCGACTTCTCTCCCGTCCTCCCCTCTTCCAAATCCAGCGACTCCCATTTACCAACTTCAACTACTTTGTCAGACATTTCGGTTTCTAAGCTCTCAAACCTGTCCTTCGTCTCCAGAATTCGAGTGCCTCTTCCCAACATTAACATCCCAATTCCCAATTCCGACTGCAACTCGCTCTATTCTACGGTTGCGTCTTCCCCTGCTCTTCTTAAGCTCTATCACTCTGCAGACTTGGGCAAGGCCCCCAACCCAACTGCATATAAGCCTGTTTCATTATCTCCTTCCGTCCCTGACGTCTCCTACAGATGGCATTTGCCCGAGCCCAATGCTCTAGATGTTTCCGGGAATTCTGATTGTTCATCAACAAAGATGAGGACTGTGGTGGTTTTACTGGGATGGCTAGGAGCAAAGCAAAAACATCTCAAGAGGTATGCCGACTGGTATACTTCGCAAGGGTATCACGCCATTACCTTCACTTTACCCATGGCTGACATTCTCAAATACCAGCCCGGTGGTAAAGTCGAAGACCACATTGACTCGCTTGTCACTCATTTGGCTGATTGGTTAGAAGAGGAGCAGGGAAAGAACCTCATGTTTCATACTTTTAGCAACACTGGATGGTTAACGTATGGTGTAATGCTTGAGAAGTTCCAGAAGCATGATCCGTCTGTAATGGGCAGGATTCGGGGATGCGTTGTGGATTCTGCACCTGTTGCAGCACCTGACCCTCAGGTCTGGGCTTCTGGTTTCTCTGCAGCCTTTCTGAAAAAACATAGTGTAGCAACAAAAGGAACCACAGACGCTAGTGAATCAGTGATGGATGTTTTGGTTGACAGCAAGGGTGTAGTGGCACCCAAACCTGCAGTAACTGAGGCAGCTTTGCTTTTAGTATTGGAGAAGTTCTTTAAAGTGGTCTTGAATATTCCTACGGTGAACAGGAGGCTTTCTGATGTTTTGGGATTACTGTCAGCACGACAACCAAGCTGTCCGCAATTATATATCTACAGCTCTGCAGACAGAGTCATTCCTGCAGGATCTGTGGAGTCGTTTATAAAACAGCAGCGGAGGGCGGGACATGAGGTCAGGGCTTGCAACTTTGTCTCTACACCTCATGTTGATCATTTCAGAAATGACCCGAAGCTGTATACTTCAGAGCTAACACACTTTCTGGAGGACTGTGTGCTTACTGGTTGCAAACAGTCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF829

Protein Analysis

427

Amino Acids

46.41

Weight (kDa)

8.36

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF829 PF05705 150 - 414 1.5e-70 Eukaryotic protein of unknown function (DUF829)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1124
AasI GACNNNNNNGTC 2 cut(s) 614, 803
AatII GACGTC 1 cut(s) 369
Acc36I ACCTGC 1 cut(s) 940
AccB1I GGYRCC 1 cut(s) 922
AccI GTMKAC 2 cut(s) 515, 1217
AccIII TCCGGA 1 cut(s) 14
AciI CCGC 6 cut(s) 42, 45, 48, 1061, 1135, 1142
AclWI GGATC 2 cut(s) 728, 1114
AcsI RAATTY 2 cut(s) 189, 418
AcuI CTGAAG 1 cut(s) 1206
AcyI GRCGYC 1 cut(s) 366
AfiI CCNNNNNNNGG 1 cut(s) 378
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 3 cut(s) 26, 132, 991
AhdI GACNNNNNGTC 1 cut(s) 1151
AjuI GAANNNNNNNTTGG 2 cut(s) 214, 246
AluBI AGCT 7 cut(s) 163, 286, 950, 1056, 1080, 1213, 1228
AluI AGCT 7 cut(s) 163, 286, 950, 1056, 1080, 1213, 1228
Alw26I GTCTC 3 cut(s) 187, 373, 1177
AlwI GGATC 2 cut(s) 728, 1114
AlwNI CAGNNNCTG 3 cut(s) 794, 941, 1109
Ama87I CYCGRG 1 cut(s) 389
Aor13HI TCCGGA 1 cut(s) 14
AoxI GGCC 2 cut(s) 29, 312
ApeKI GCWGC 4 cut(s) 788, 827, 947, 1132
ApoI RAATTY 2 cut(s) 189, 418
AspS9I GGNCC 1 cut(s) 313
AsuC2I CCSGG 2 cut(s) 415, 582
AsuHPI GGTGA 1 cut(s) 1015
AvaI CYCGRG 1 cut(s) 389
AxyI CCTNAGG 1 cut(s) 801
BanI GGYRCC 1 cut(s) 922
BanII GRGCYC 1 cut(s) 396
BbsI GAAGAC 2 cut(s) 258, 603
BbvI GCAGC 4 cut(s) 800, 839, 959, 1144
BccI CCATC 4 cut(s) 372, 462, 684, 883
BceAI ACGGC 1 cut(s) 44
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BclI TGATCA 1 cut(s) 1189
BcnI CCSGG 2 cut(s) 415, 582
BcoDI GTCTC 3 cut(s) 187, 373, 1177
BfaI CTAG 3 cut(s) 404, 473, 876
BfmI CTRYAG 7 cut(s) 297, 373, 825, 933, 1075, 1083, 1101
BfrI CTTAAG 1 cut(s) 281
BfuAI ACCTGC 1 cut(s) 940
BisI GCNGC 7 cut(s) 42, 45, 48, 789, 828, 948, 1133
BlsI GCNGC 7 cut(s) 43, 46, 49, 790, 829, 949, 1134
Bme1390I CCNGG 2 cut(s) 415, 582
BmeRI GACNNNNNGTC 1 cut(s) 1151
BmeT110I CYCGRG 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 4 cut(s) 7, 315, 865, 924
BmrFI CCNGG 2 cut(s) 415, 582
BmrI ACTGGG 1 cut(s) 473
BmsI GCATC 1 cut(s) 752
BmuI ACTGGG 1 cut(s) 473
BpiI GAAGAC 2 cut(s) 258, 603
BpmI CTGGAG 2 cut(s) 169, 1262
BpuEI CTTGAG 2 cut(s) 479, 734
BpuMI CCSGG 2 cut(s) 415, 582
BsaHI GRCGYC 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 555
BsaWI WCCGGW 1 cut(s) 14
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse1I ACTGG 4 cut(s) 468, 515, 691, 1264
Bse21I CCTNAGG 1 cut(s) 801
BseAI TCCGGA 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 555
BseGI GGATG 5 cut(s) 216, 473, 695, 767, 898
BseLI CCNNNNNNNGG 1 cut(s) 378
BseMII CTCAG 2 cut(s) 815, 933
BseNI ACTGG 4 cut(s) 468, 515, 691, 1264
BseRI GAGGAG 1 cut(s) 659
BseXI GCAGC 4 cut(s) 800, 839, 959, 1144
BsgI GTGCAG 1 cut(s) 762
BshFI GGCC 2 cut(s) 31, 314
BshNI GGYRCC 1 cut(s) 922
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 3 cut(s) 15, 414, 582
BslFI GGGAC 2 cut(s) 344, 1158
BslI CCNNNNNNNGG 1 cut(s) 378
BsmAI GTCTC 3 cut(s) 187, 373, 1177
BsmBI CGTCTC 2 cut(s) 187, 373
BsmFI GGGAC 2 cut(s) 344, 1158
BsnI GGCC 2 cut(s) 31, 314
BsoBI CYCGRG 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 396
Bsp13I TCCGGA 1 cut(s) 14
Bsp143I GATC 4 cut(s) 36, 733, 1106, 1189
Bsp19I CCATGG 1 cut(s) 555
BspACI CCGC 6 cut(s) 42, 45, 48, 1061, 1135, 1142
BspANI GGCC 2 cut(s) 31, 314
BspCNI CTCAG 2 cut(s) 814, 934
BspEI TCCGGA 1 cut(s) 14
BspLI GGNNCC 4 cut(s) 7, 315, 865, 924
BspMAI CTGCAG 5 cut(s) 301, 829, 937, 1087, 1105
BspMI ACCTGC 1 cut(s) 940
BspPI GGATC 2 cut(s) 728, 1114
BspQI GCTCTTC 1 cut(s) 282
BspT107I GGYRCC 1 cut(s) 922
BspTI CTTAAG 1 cut(s) 281
BsrI ACTGG 4 cut(s) 468, 515, 691, 1264
BssECI CCNNGG 1 cut(s) 555
BssMI GATC 4 cut(s) 36, 733, 1106, 1189
BssNAI GTATAC 2 cut(s) 516, 1218
BssNI GRCGYC 1 cut(s) 366
BssT1I CCWWGG 1 cut(s) 555
Bst1107I GTATAC 2 cut(s) 516, 1218
Bst4CI ACNGT 6 cut(s) 259, 451, 1003, 1038, 1250, 1272
Bst6I CTCTTC 4 cut(s) 103, 207, 282, 636
BstACI GRCGYC 1 cut(s) 366
BstAFI CTTAAG 1 cut(s) 281
BstAPI GCANNNNNTGC 1 cut(s) 785
BstC8I GCNNGC 1 cut(s) 1162
BstDEI CTNAG 3 cut(s) 159, 801, 942
BstDSI CCRYGG 1 cut(s) 555
BstF5I GGATG 5 cut(s) 216, 473, 695, 767, 898
BstKTI GATC 4 cut(s) 39, 736, 1109, 1192
BstMAI GTCTC 3 cut(s) 187, 373, 1177
BstMBI GATC 4 cut(s) 36, 733, 1106, 1189
BstMWI GCNNNNNNNGC 2 cut(s) 47, 785
BstSCI CCNGG 2 cut(s) 413, 580
BstSFI CTRYAG 7 cut(s) 297, 373, 825, 933, 1075, 1083, 1101
BstV1I GCAGC 4 cut(s) 800, 839, 959, 1144
BstV2I GAAGAC 2 cut(s) 258, 603
BstX2I RGATCY 1 cut(s) 1106
BstXI CCANNNNNNTGG 1 cut(s) 584
BstYI RGATCY 1 cut(s) 1106
BstZ17I GTATAC 2 cut(s) 516, 1218
Bsu36I CCTNAGG 1 cut(s) 801
BsuRI GGCC 2 cut(s) 31, 314
BtgI CCRYGG 1 cut(s) 555
BtsCI GGATG 5 cut(s) 216, 473, 695, 767, 898
BtsIMutI CAGTG 2 cut(s) 684, 891
BveI ACCTGC 1 cut(s) 940
Cac8I GCNNGC 1 cut(s) 1162
CaiI CAGNNNCTG 3 cut(s) 794, 941, 1109
Cfr13I GGNCC 1 cut(s) 313
CseI GACGC 2 cut(s) 252, 881
CviAII CATG 5 cut(s) 556, 664, 731, 1148, 1184
DdeI CTNAG 3 cut(s) 159, 801, 942
DpnI GATC 4 cut(s) 38, 735, 1108, 1191
DpnII GATC 4 cut(s) 36, 733, 1106, 1189
DraI TTTAAA 1 cut(s) 979
DrdI GACNNNNNNGTC 2 cut(s) 614, 803
DriI GACNNNNNGTC 1 cut(s) 1151
DseDI GACNNNNNNGTC 2 cut(s) 614, 803
Eam1104I CTCTTC 4 cut(s) 103, 207, 282, 636
Eam1105I GACNNNNNGTC 1 cut(s) 1151
EarI CTCTTC 4 cut(s) 103, 207, 282, 636
Eco130I CCWWGG 1 cut(s) 555
Eco24I GRGCYC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 1206
Eco81I CCTNAGG 1 cut(s) 801
Eco88I CYCGRG 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 313
EcoRI GAATTC 2 cut(s) 189, 418
EcoT14I CCWWGG 1 cut(s) 555
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 555
Esp3I CGTCTC 2 cut(s) 187, 373
FaeI CATG 5 cut(s) 559, 667, 734, 1151, 1187
FaqI GGGAC 2 cut(s) 344, 1158
FatI CATG 5 cut(s) 555, 663, 730, 1147, 1183
FauI CCCGC 1 cut(s) 1135
FbaI TGATCA 1 cut(s) 1189
FblI GTMKAC 2 cut(s) 515, 1217
Fnu4HI GCNGC 7 cut(s) 42, 45, 48, 789, 828, 948, 1133
FokI GGATG 5 cut(s) 203, 480, 702, 774, 905
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 7 cut(s) 42, 45, 48, 789, 828, 948, 1133
FspBI CTAG 3 cut(s) 404, 473, 876
GluI GCNGC 7 cut(s) 42, 45, 48, 789, 828, 948, 1133
GsuI CTGGAG 2 cut(s) 169, 1262
HaeIII GGCC 2 cut(s) 31, 314
HapII CCGG 3 cut(s) 15, 414, 582
HgaI GACGC 2 cut(s) 252, 881
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 5 cut(s) 559, 667, 734, 1151, 1187
HincII GTYRAC 2 cut(s) 696, 904
HindII GTYRAC 2 cut(s) 696, 904
HinfI GANTC 8 cut(s) 18, 113, 608, 754, 773, 881, 1092, 1115
HpaI GTTAAC 1 cut(s) 696
HpaII CCGG 3 cut(s) 15, 414, 582
HphI GGTGA 1 cut(s) 1015
Hpy166II GTNNAC 5 cut(s) 516, 696, 904, 1006, 1218
Hpy188I TCNGA 9 cut(s) 36, 76, 145, 235, 424, 837, 1021, 1199, 1225
Hpy188III TCNNGA 7 cut(s) 15, 186, 404, 496, 724, 988, 1241
Hpy8I GTNNAC 5 cut(s) 516, 696, 904, 1006, 1218
HpyAV CCTTC 4 cut(s) 32, 187, 363, 553
HpyCH4III ACNGT 6 cut(s) 259, 451, 1003, 1038, 1250, 1272
HpyCH4IV ACGT 2 cut(s) 366, 698
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 785
HpyF3I CTNAG 3 cut(s) 159, 801, 942
HpySE526I ACGT 2 cut(s) 366, 698
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 5 cut(s) 559, 667, 734, 1151, 1187
Kpn2I TCCGGA 1 cut(s) 14
Ksp22I TGATCA 1 cut(s) 1189
KspAI GTTAAC 1 cut(s) 696
Kzo9I GATC 4 cut(s) 36, 733, 1106, 1189
LguI GCTCTTC 1 cut(s) 282
LmnI GCTCC 2 cut(s) 476, 646
Lsp1109I GCAGC 4 cut(s) 800, 839, 959, 1144
LweI GCATC 1 cut(s) 752
MaeI CTAG 3 cut(s) 404, 473, 876
MaeII ACGT 2 cut(s) 366, 698
MaeIII GTNAC 2 cut(s) 616, 937
MalI GATC 4 cut(s) 38, 735, 1108, 1191
MboI GATC 4 cut(s) 36, 733, 1106, 1189
MboII GAAGA 7 cut(s) 63, 90, 194, 258, 269, 608, 653
MflI RGATCY 1 cut(s) 1106
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 5 cut(s) 189, 222, 229, 418, 1064
MlyI GAGTC 4 cut(s) 107, 602, 1101, 1124
MmeI TCCRAC 2 cut(s) 99, 258
MroI TCCGGA 1 cut(s) 14
MseI TTAA 5 cut(s) 213, 282, 695, 978, 1279
MspA1I CMGCKG 2 cut(s) 50, 1135
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 3 cut(s) 15, 414, 582
MspR9I CCNGG 2 cut(s) 415, 582
MwoI GCNNNNNNNGC 2 cut(s) 47, 785
NciI CCSGG 2 cut(s) 415, 582
NcoI CCATGG 1 cut(s) 555
NdeII GATC 4 cut(s) 36, 733, 1106, 1189
NlaIII CATG 5 cut(s) 559, 667, 734, 1151, 1187
NlaIV GGNNCC 4 cut(s) 7, 315, 865, 924
NmuCI GTSAC 1 cut(s) 616
PciSI GCTCTTC 1 cut(s) 282
PfeI GAWTC 4 cut(s) 18, 754, 773, 881
PflFI GACNNNGTC 1 cut(s) 1091
PfoI TCCNGGA 1 cut(s) 413
PkrI GCNGC 7 cut(s) 43, 46, 49, 790, 829, 949, 1134
PleI GAGTC 4 cut(s) 107, 602, 1100, 1123
PpsI GAGTC 4 cut(s) 107, 602, 1100, 1123
PsiI TTATAA 1 cut(s) 1124
PspN4I GGNNCC 4 cut(s) 7, 315, 865, 924
PspPI GGNCC 1 cut(s) 313
PstI CTGCAG 5 cut(s) 301, 829, 937, 1087, 1105
PstNI CAGNNNCTG 3 cut(s) 794, 941, 1109
PsuI RGATCY 1 cut(s) 1106
PsyI GACNNNGTC 1 cut(s) 1091
SapI GCTCTTC 1 cut(s) 282
SaqAI TTAA 5 cut(s) 213, 282, 695, 978, 1279
SatI GCNGC 7 cut(s) 42, 45, 48, 789, 828, 948, 1133
Sau3AI GATC 4 cut(s) 36, 733, 1106, 1189
Sau96I GGNCC 1 cut(s) 313
SbfI CCTGCAGG 1 cut(s) 1105
SchI GAGTC 4 cut(s) 107, 602, 1101, 1124
ScrFI CCNGG 2 cut(s) 415, 582
SdaI CCTGCAGG 1 cut(s) 1105
SduI GDGCHC 1 cut(s) 396
SfaNI GCATC 1 cut(s) 752
SfcI CTRYAG 7 cut(s) 297, 373, 825, 933, 1075, 1083, 1101
SmlI CTYRAG 3 cut(s) 281, 494, 713
SmoI CTYRAG 3 cut(s) 281, 494, 713
Sse8387I CCTGCAGG 1 cut(s) 1105
Sse9I AATT 5 cut(s) 189, 222, 229, 418, 1064
SsiI CCGC 6 cut(s) 42, 45, 48, 1061, 1135, 1142
SspI AATATT 1 cut(s) 994
SspMI CTAG 3 cut(s) 404, 473, 876
StyD4I CCNGG 2 cut(s) 413, 580
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 6 cut(s) 259, 451, 1003, 1038, 1250, 1272
TaiI ACGT 2 cut(s) 369, 701
TaqI TCGA 2 cut(s) 193, 594
TasI AATT 5 cut(s) 189, 222, 229, 418, 1064
TauI GCSGC 3 cut(s) 44, 47, 50
TfiI GAWTC 4 cut(s) 18, 754, 773, 881
Tru1I TTAA 5 cut(s) 213, 282, 695, 978, 1279
Tru9I TTAA 5 cut(s) 213, 282, 695, 978, 1279
TscAI CASTG 2 cut(s) 691, 891
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 4 cut(s) 788, 827, 947, 1132
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 3 cut(s) 333, 420, 659
TspGWI ACGGA 2 cut(s) 346, 726
TspRI CASTG 2 cut(s) 691, 891
Tth111I GACNNNGTC 1 cut(s) 1091
Vha464I CTTAAG 1 cut(s) 281
XapI RAATTY 2 cut(s) 189, 418
XbaI TCTAGA 1 cut(s) 403
XmiI GTMKAC 2 cut(s) 515, 1217
XspI CTAG 3 cut(s) 404, 473, 876
ZraI GACGTC 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.