Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004311.1

Orthogroup ID

OG0002622

Physical Location & Seq

Genomic Coordinates Forward (+)

46375 .. 47700

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004311.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

atgagttccttgtctggaatccttcaacgacctctcattgccgccgccgctgttggctttgctttattttcttccgacttctctctcagactgccttctcacaaatccaaccactcttctacttctacctcctccgacttatcaacttcttcctcatcatgcgtttcagccatttcagtttctaagcttgcaaccttgtcctttatctccagaattcgagtacctgttcccaacattaacttcccaattcccaattccgactgcaattctggtcccaaattgctgtattctttggttgcatcttcccctgctcttcttaagttgtatcactctgcagacttgggcaaagcgccgaacccaactgcatataaacatgatatatcctcacctacttccgtgcctgaggtctcctacagatggcatttgcctgagccaaatgcattagatgtttccggtacctccgattgttcatcagcaaagatgaggactgtggtggttttgctgggatggttaggagcaaatcaaaagcatcttaagaggtatgctgactggtatacttcgcaggggtttcacgccattacttttactttacccatggctgaaattcttaaataccagcctggcggtaaagtggaagagcatattgacttgcttgtaactcatttggctgattggttagaagaagagccgggaaagaacctactttttcatacttttagcaacactggatggttaacgtatggtgtaatgttggagaagttccagaagaggcacgatccttcaataatgggcaggattcggggatgcgttgtggattccgcacctgttgcagcacctgacccgcaggtctgggcctctggtttctctgcagcctttctgaaaaagcatagtgtagcaacaaaagggaccaccagagtagacgctactgagtcaggcatggatgttttgattgacagcaagggagtggcacctaaacctgcagtaactgaggaagctttgcttttagttttggagaagttctttgaggttgttttgaatcttcctacagtgaacaggaggctttctgatattttgggcttactgtcagcacgacaaccaagctgtccgcaattatatatctacagctcggcagacagagtcattcctgcaggatctgtggagtcgttcataaaacggcagcggagggctggacatgaggttagggcttgcaactttgtctcgacacctcatgttgatcatttcagaaatgaccagaagctgtatacttctgagctaactcactttctggaggactgtgtgcctgcttgttgcaaaaagtatcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF829

Protein Analysis

441

Amino Acids

48.29

Weight (kDa)

8.62

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19970 AT3G19970 AT3G19970 AT3G19970 AT3G19970
fragaria_vesca	FvH4_4g37150 FvH4_7g21480
malus_domestica	MD13G1003100.v1.1
prunus_persica	Prupe.1G349300_v2.0.a1
pyrus_communis	pycom13g00260 pycom16g00170
rosa_chinensis	RchiOBHm_Chr1g0365791 RchiOBHm_Chr4g0409441 RchiOBHm_Chr4g0446951
rosa_laevigata	RLG00000005618 RLG00000027396
rosa_multiflora	Rmu_co8345695.1_g000001 Rmu_sc0001753.1_g000006 Rmu_sc0002365.1_g000009 Rmu_sc0004311.1_g000013 Rmu_sc0011539.1_g000002 Rmu_sc0034955.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290870 Rroxscaffold_5G00387280
rosa_rugosa	Rorug01G0324300 Rorug03G0341000 Rorug03G0341000 Rorug04G0376500
rosa_samantha	Rh1AG333200 Rh1BG294100 Rh1CG310800 Rh1DG326500 Rh4AG437900 Rh4BG446800 Rh4CG464100 Rh4DG445600
rosa_wichuraiana	Rw0G014000 Rw1G006220 Rw1G029570 Rw4G037450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	845
Acc36I	ACCTGC	2 cut(s)	835, 985
Acc65I	GGTACC	1 cut(s)	455
AccB1I	GGYRCC	2 cut(s)	455, 967
AccI	GTMKAC	3 cut(s)	554, 918, 1262
AciI	CCGC	8 cut(s)	42, 45, 48, 624, 819, 842, 1106, 1180
AclWI	GGATC	2 cut(s)	770, 1159
AcsI	RAATTY	2 cut(s)	213, 603
AfaI	GTAC	2 cut(s)	222, 457
AfiI	CCNNNNNNNGG	1 cut(s)	417
AflII	CTTAAG	2 cut(s)	317, 533
AgsI	TTSAA	3 cut(s)	26, 783, 1036
AjnI	CCWGG	1 cut(s)	619
AjuI	GAANNNNNNNTTGG	4 cut(s)	224, 238, 256, 270
AluBI	AGCT	6 cut(s)	187, 995, 1101, 1125, 1258, 1273
AluI	AGCT	6 cut(s)	187, 995, 1101, 1125, 1258, 1273
Alw26I	GTCTC	2 cut(s)	412, 1222
AlwI	GGATC	2 cut(s)	770, 1159
AlwNI	CAGNNNCTG	4 cut(s)	836, 986, 1154, 1258
AoxI	GGCC	1 cut(s)	852
ApeKI	GCWGC	3 cut(s)	830, 869, 1177
ApoI	RAATTY	2 cut(s)	213, 603
Asp718I	GGTACC	1 cut(s)	455
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	3 cut(s)	272, 852, 906
AsuC2I	CCSGG	1 cut(s)	690
AsuHPI	GGTGA	1 cut(s)	378
AvaII	GGWCC	2 cut(s)	272, 906
AxyI	CCTNAGG	1 cut(s)	402
BanI	GGYRCC	2 cut(s)	455, 967
BbvI	GCAGC	3 cut(s)	842, 881, 1189
BccI	CCATC	3 cut(s)	411, 501, 723
BceAI	ACGGC	1 cut(s)	1190
BciT130I	CCWGG	1 cut(s)	621
BclI	TGATCA	1 cut(s)	1234
BcnI	CCSGG	1 cut(s)	690
BcoDI	GTCTC	2 cut(s)	412, 1222
BfmI	CTRYAG	7 cut(s)	333, 412, 867, 978, 1044, 1120, 1146
BfoI	RGCGCY	1 cut(s)	353
BfrI	CTTAAG	2 cut(s)	317, 533
BfuAI	ACCTGC	2 cut(s)	835, 985
BisI	GCNGC	6 cut(s)	42, 45, 48, 831, 870, 1178
BlsI	GCNGC	6 cut(s)	43, 46, 49, 832, 871, 1179
Bme1390I	CCNGG	2 cut(s)	621, 690
Bme18I	GGWCC	2 cut(s)	272, 906
BmgT120I	GGNCC	3 cut(s)	272, 852, 906
BmiI	GGNNCC	4 cut(s)	274, 457, 907, 969
BmrFI	CCNGG	2 cut(s)	621, 690
BmsI	GCATC	3 cut(s)	308, 538, 794
BpmI	CTGGAG	2 cut(s)	193, 1307
Bpu10I	CCTNAGC	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	690
BsaI	GGTCTC	1 cut(s)	412
BsaJI	CCNNGG	1 cut(s)	594
BsaWI	WCCGGW	1 cut(s)	452
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse1I	ACTGG	2 cut(s)	554, 730
Bse21I	CCTNAGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	621
BseDI	CCNNGG	1 cut(s)	594
BseGI	GGATG	4 cut(s)	512, 734, 809, 946
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	6 cut(s)	100, 393, 420, 918, 978, 1260
BseNI	ACTGG	2 cut(s)	554, 730
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	3 cut(s)	842, 881, 1189
BseYI	CCCAGC	1 cut(s)	502
BshFI	GGCC	1 cut(s)	854
BshNI	GGYRCC	2 cut(s)	455, 967
BsiSI	CCGG	2 cut(s)	453, 689
BslFI	GGGAC	2 cut(s)	258, 919
BslI	CCNNNNNNNGG	1 cut(s)	417
BsmAI	GTCTC	2 cut(s)	412, 1222
BsmFI	GGGAC	2 cut(s)	258, 919
BsnI	GGCC	1 cut(s)	854
Bso31I	GGTCTC	1 cut(s)	412
Bsp143I	GATC	3 cut(s)	775, 1151, 1234
Bsp19I	CCATGG	1 cut(s)	594
BspACI	CCGC	8 cut(s)	42, 45, 48, 624, 819, 842, 1106, 1180
BspANI	GGCC	1 cut(s)	854
BspCNI	CTCAG	6 cut(s)	99, 394, 421, 919, 979, 1261
BspLI	GGNNCC	4 cut(s)	274, 457, 907, 969
BspMAI	CTGCAG	4 cut(s)	337, 871, 982, 1150
BspMI	ACCTGC	2 cut(s)	835, 985
BspPI	GGATC	2 cut(s)	770, 1159
BspQI	GCTCTTC	3 cut(s)	318, 630, 678
BspT107I	GGYRCC	2 cut(s)	455, 967
BspTI	CTTAAG	2 cut(s)	317, 533
BspTNI	GGTCTC	1 cut(s)	412
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	554, 730
BssECI	CCNNGG	1 cut(s)	594
BssMI	GATC	3 cut(s)	775, 1151, 1234
BssNAI	GTATAC	2 cut(s)	555, 1263
BssT1I	CCWWGG	1 cut(s)	594
Bst1107I	GTATAC	2 cut(s)	555, 1263
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	4 cut(s)	490, 1048, 1083, 1295
Bst6I	CTCTTC	5 cut(s)	121, 318, 630, 678, 761
BstAFI	CTTAAG	2 cut(s)	317, 533
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstC8I	GCNNGC	3 cut(s)	189, 1207, 1302
BstDEI	CTNAG	7 cut(s)	86, 183, 402, 429, 927, 987, 1269
BstDSI	CCRYGG	1 cut(s)	594
BstF5I	GGATG	4 cut(s)	512, 734, 809, 946
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	3 cut(s)	778, 1154, 1237
BstMAI	GTCTC	2 cut(s)	412, 1222
BstMBI	GATC	3 cut(s)	775, 1151, 1234
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 827
BstNI	CCWGG	1 cut(s)	621
BstSCI	CCNGG	2 cut(s)	619, 688
BstSFI	CTRYAG	7 cut(s)	333, 412, 867, 978, 1044, 1120, 1146
BstV1I	GCAGC	3 cut(s)	842, 881, 1189
BstX2I	RGATCY	1 cut(s)	1151
BstYI	RGATCY	1 cut(s)	1151
BstZ17I	GTATAC	2 cut(s)	555, 1263
Bsu36I	CCTNAGG	1 cut(s)	402
BsuRI	GGCC	1 cut(s)	854
BtgI	CCRYGG	1 cut(s)	594
BtsCI	GGATG	4 cut(s)	512, 734, 809, 946
BtsIMutI	CAGTG	2 cut(s)	723, 1053
BveI	ACCTGC	2 cut(s)	835, 985
Cac8I	GCNNGC	3 cut(s)	189, 1207, 1302
CaiI	CAGNNNCTG	4 cut(s)	836, 986, 1154, 1258
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	3 cut(s)	272, 852, 906
CseI	GACGC	1 cut(s)	929
Csp6I	GTAC	2 cut(s)	221, 456
CviAII	CATG	6 cut(s)	159, 374, 595, 937, 1193, 1229
CviQI	GTAC	2 cut(s)	221, 456
DdeI	CTNAG	7 cut(s)	86, 183, 402, 429, 927, 987, 1269
DpnI	GATC	3 cut(s)	777, 1153, 1236
DpnII	GATC	3 cut(s)	775, 1151, 1234
DrdI	GACNNNNNNGTC	1 cut(s)	845
DseDI	GACNNNNNNGTC	1 cut(s)	845
Eam1104I	CTCTTC	5 cut(s)	121, 318, 630, 678, 761
EarI	CTCTTC	5 cut(s)	121, 318, 630, 678, 761
Eco130I	CCWWGG	1 cut(s)	594
Eco31I	GGTCTC	1 cut(s)	412
Eco47I	GGWCC	2 cut(s)	272, 906
Eco81I	CCTNAGG	1 cut(s)	402
EcoRI	GAATTC	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	594
EcoT22I	ATGCAT	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	6 cut(s)	162, 377, 598, 940, 1196, 1232
FalI	AAGNNNNNCTT	2 cut(s)	984, 1016
FaqI	GGGAC	2 cut(s)	258, 919
FatI	CATG	6 cut(s)	158, 373, 594, 936, 1192, 1228
FauI	CCCGC	1 cut(s)	849
FbaI	TGATCA	1 cut(s)	1234
FblI	GTMKAC	3 cut(s)	554, 918, 1262
Fnu4HI	GCNGC	6 cut(s)	42, 45, 48, 831, 870, 1178
FokI	GGATG	4 cut(s)	519, 741, 816, 953
Fsp4HI	GCNGC	6 cut(s)	42, 45, 48, 831, 870, 1178
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	6 cut(s)	42, 45, 48, 831, 870, 1178
GsaI	CCCAGC	1 cut(s)	506
GsuI	CTGGAG	2 cut(s)	193, 1307
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	854
HapII	CCGG	2 cut(s)	453, 689
HgaI	GACGC	1 cut(s)	929
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	6 cut(s)	162, 377, 598, 940, 1196, 1232
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HincII	GTYRAC	1 cut(s)	735
HindII	GTYRAC	1 cut(s)	735
HindIII	AAGCTT	2 cut(s)	185, 993
HinfI	GANTC	7 cut(s)	18, 796, 815, 929, 1036, 1137, 1160
HpaI	GTTAAC	1 cut(s)	735
HpaII	CCGG	2 cut(s)	453, 689
HphI	GGTGA	1 cut(s)	378
Hpy166II	GTNNAC	5 cut(s)	555, 735, 919, 1051, 1263
Hpy188I	TCNGA	9 cut(s)	76, 89, 136, 259, 463, 879, 1066, 1244, 1270
Hpy188III	TCNNGA	5 cut(s)	15, 210, 763, 1219, 1286
Hpy8I	GTNNAC	5 cut(s)	555, 735, 919, 1051, 1263
HpyAV	CCTTC	3 cut(s)	32, 105, 789
HpyCH4III	ACNGT	4 cut(s)	490, 1048, 1083, 1295
HpyCH4IV	ACGT	1 cut(s)	737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 827
HpyF3I	CTNAG	7 cut(s)	86, 183, 402, 429, 927, 987, 1269
HpySE526I	ACGT	1 cut(s)	737
Hsp92II	CATG	6 cut(s)	162, 377, 598, 940, 1196, 1232
HspAI	GCGC	1 cut(s)	350
KpnI	GGTACC	1 cut(s)	459
Ksp22I	TGATCA	1 cut(s)	1234
KspAI	GTTAAC	1 cut(s)	735
Kzo9I	GATC	3 cut(s)	775, 1151, 1234
LguI	GCTCTTC	3 cut(s)	318, 630, 678
LmnI	GCTCC	1 cut(s)	515
Lsp1109I	GCAGC	3 cut(s)	842, 881, 1189
LweI	GCATC	3 cut(s)	308, 538, 794
MaeII	ACGT	1 cut(s)	737
MaeIII	GTNAC	2 cut(s)	655, 982
MalI	GATC	3 cut(s)	777, 1153, 1236
MboI	GATC	3 cut(s)	775, 1151, 1234
MflI	RGATCY	1 cut(s)	1151
MluCI	AATT	7 cut(s)	213, 246, 253, 265, 278, 603, 1109
MlyI	GAGTC	3 cut(s)	938, 1146, 1169
MmeI	TCCRAC	5 cut(s)	99, 132, 159, 282, 732
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	6 cut(s)	237, 318, 534, 609, 734, 1324
MspA1I	CMGCKG	2 cut(s)	50, 1180
MspCI	CTTAAG	2 cut(s)	317, 533
MspI	CCGG	2 cut(s)	453, 689
MspR9I	CCNGG	2 cut(s)	621, 690
MvaI	CCWGG	1 cut(s)	621
MwoI	GCNNNNNNNGC	2 cut(s)	47, 827
NciI	CCSGG	1 cut(s)	690
NcoI	CCATGG	1 cut(s)	594
NdeII	GATC	3 cut(s)	775, 1151, 1234
NlaIII	CATG	6 cut(s)	162, 377, 598, 940, 1196, 1232
NlaIV	GGNNCC	4 cut(s)	274, 457, 907, 969
NmeAIII	GCCGAG	1 cut(s)	1106
NsiI	ATGCAT	1 cut(s)	442
PciSI	GCTCTTC	3 cut(s)	318, 630, 678
PfeI	GAWTC	4 cut(s)	18, 796, 815, 1036
PflFI	GACNNNGTC	1 cut(s)	1136
PkrI	GCNGC	6 cut(s)	43, 46, 49, 832, 871, 1179
PleI	GAGTC	3 cut(s)	937, 1145, 1168
PpsI	GAGTC	3 cut(s)	937, 1145, 1168
Psp6I	CCWGG	1 cut(s)	619
PspFI	CCCAGC	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	4 cut(s)	274, 457, 907, 969
PspPI	GGNCC	3 cut(s)	272, 852, 906
PstI	CTGCAG	4 cut(s)	337, 871, 982, 1150
PstNI	CAGNNNCTG	4 cut(s)	836, 986, 1154, 1258
PsuI	RGATCY	1 cut(s)	1151
PsyI	GACNNNGTC	1 cut(s)	1136
RsaI	GTAC	2 cut(s)	222, 457
RsaNI	GTAC	2 cut(s)	221, 456
SapI	GCTCTTC	3 cut(s)	318, 630, 678
SaqAI	TTAA	6 cut(s)	237, 318, 534, 609, 734, 1324
SatI	GCNGC	6 cut(s)	42, 45, 48, 831, 870, 1178
Sau3AI	GATC	3 cut(s)	775, 1151, 1234
Sau96I	GGNCC	3 cut(s)	272, 852, 906
SbfI	CCTGCAGG	1 cut(s)	1150
SchI	GAGTC	3 cut(s)	938, 1146, 1169
ScrFI	CCNGG	2 cut(s)	621, 690
SdaI	CCTGCAGG	1 cut(s)	1150
SfaNI	GCATC	3 cut(s)	308, 538, 794
SfcI	CTRYAG	7 cut(s)	333, 412, 867, 978, 1044, 1120, 1146
SinI	GGWCC	2 cut(s)	272, 906
SmlI	CTYRAG	2 cut(s)	317, 533
SmoI	CTYRAG	2 cut(s)	317, 533
Sse8387I	CCTGCAGG	1 cut(s)	1150
Sse9I	AATT	7 cut(s)	213, 246, 253, 265, 278, 603, 1109
SsiI	CCGC	8 cut(s)	42, 45, 48, 624, 819, 842, 1106, 1180
StyD4I	CCNGG	2 cut(s)	619, 688
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	4 cut(s)	490, 1048, 1083, 1295
TaiI	ACGT	1 cut(s)	740
TaqI	TCGA	2 cut(s)	217, 1220
TasI	AATT	7 cut(s)	213, 246, 253, 265, 278, 603, 1109
TauI	GCSGC	3 cut(s)	44, 47, 50
TfiI	GAWTC	4 cut(s)	18, 796, 815, 1036
Tru1I	TTAA	6 cut(s)	237, 318, 534, 609, 734, 1324
Tru9I	TTAA	6 cut(s)	237, 318, 534, 609, 734, 1324
TscAI	CASTG	2 cut(s)	730, 1053
TseI	GCWGC	3 cut(s)	830, 869, 1177
TspDTI	ATGAA	3 cut(s)	459, 698, 1156
TspGWI	ACGGA	1 cut(s)	385
TspRI	CASTG	2 cut(s)	730, 1053
Tth111I	GACNNNGTC	1 cut(s)	1136
Vha464I	CTTAAG	2 cut(s)	317, 533
VpaK11BI	GGWCC	2 cut(s)	272, 906
XapI	RAATTY	2 cut(s)	213, 603
XmiI	GTMKAC	3 cut(s)	554, 918, 1262
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.