Rroxscaffold_4G00290870

Eukaryotic protein of unknown function (DUF829)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002622
Physical Location & Seq
Forward (+)
11339818 .. 11342307
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00290870.1

Sequence Viewer

Length: 1143 bp
ATGATTTCGCTTCCCGACACTCCATCGACAAAGTTGGTGACAGATGTCACAACTATGTGGTCTCTTCCTCTCACGTCACTTTTGGACCATGCCCTCCGACCATACCTATCATCGGAGCGTGACACCTGGCCTAATAGGTTGTATCACTCTGCAGACTTGGGCAAAGCGCCGAACCCAACTGCTTATAAACATGATATATCATCATCTACTTCCGTCCCTGAGGTCTCCTACAGATGGCATTTTCCTGAGCCAAATGCATTAGATGTTTCCGGTACCTCCGATTGTTCATCGGCAAAGATGAGGACTGTGGTGGTTTTGCTGGGATGGTTAGGAGCAAGGCAAAAGCATCTTAAGAGTTATGCTGACTGGTATACTTCGCAGGGGTTTCACGCCATTACTTTTACTTTACCCATGGCTGAAATTCTTAAATACCAGCCTGGTGGTAAAGTGGAAGAGCATATTGACTTGCTTGTAACTCATTTGGCTGATTGGTTAGAAGAAGAGCCGGGAAAGAACCTACTTTTTCATACTTTTAGCAACACTGGATGGTTGACGTATGGTGTAATGTTGGAGAAGTTCCAGAAGAGGCACGATCCTTCAATAATAGGCAGGATTCGGGGATGCGTTGTGGATTCCACACCTGTTGCAGCACCTGACCCCCAGGTCTGGGCCTCTGGTTTCTCTGCAGCCTTTCTGAAAAAGCATAGTGTAGCAACAAAAGGGACCACCAGAGTAGACGCTAGTGAGTCAGGCATGGATGTTTTGATTGACAGCAAGGGAGTGGCACCTAAACCTGCAGTAACTGAGGCAGCTTTGCTTTTAGTTTTGGAGAAGTTCTTTGAGGTGGTTTTGAATCTTCCTACAGTGAACAGGAGGCTTTCTGATATTTTGGGCTTACTGTCAGCACGACAACCAAGCTATCCGCAATTATATATCTACAGCTCGGCAGACAGAGTCATTCCTGCAGGATCTGTGGAGTCGTTCATAAAACAGCAGCGGAGGGCTGGACTTGAGGTTAGGGCTTGCAACTTTGTCTCGACACCTCATGTTGATCATTTCAGAAATGACCAGAAGCTGTATACTTCTGTGCTAACTCAGTTTCTGGAGGACTGTGTGCTTGCTTGTTGCAAAAAGTATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF829

Protein Analysis

380

Amino Acids

42.36

Weight (kDa)

7.23

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF829 PF05705 102 - 368 6.9e-66 Eukaryotic protein of unknown function (DUF829)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
AasI GACNNNNNNGTC 1 cut(s) 662
Acc36I ACCTGC 1 cut(s) 802
Acc65I GGTACC 1 cut(s) 272
AccB1I GGYRCC 2 cut(s) 272, 784
AccI GTMKAC 3 cut(s) 371, 735, 1079
AciI CCGC 2 cut(s) 923, 997
AclWI GGATC 2 cut(s) 587, 976
AcsI RAATTY 1 cut(s) 420
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 4 cut(s) 112, 234, 666, 667
AflII CTTAAG 1 cut(s) 350
AgsI TTSAA 2 cut(s) 600, 853
AjiI CACGTC 1 cut(s) 75
AjnI CCWGG 3 cut(s) 125, 436, 660
AluBI AGCT 4 cut(s) 812, 918, 942, 1075
AluI AGCT 4 cut(s) 812, 918, 942, 1075
Alw26I GTCTC 3 cut(s) 66, 229, 1039
AlwI GGATC 2 cut(s) 587, 976
AlwNI CAGNNNCTG 5 cut(s) 653, 803, 971, 1075, 1102
AoxI GGCC 2 cut(s) 128, 669
ApeKI GCWGC 4 cut(s) 647, 686, 809, 994
ApoI RAATTY 1 cut(s) 420
Asp718I GGTACC 1 cut(s) 272
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 3 cut(s) 85, 669, 723
AsuC2I CCSGG 1 cut(s) 507
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 2 cut(s) 85, 723
AxyI CCTNAGG 1 cut(s) 219
BanI GGYRCC 2 cut(s) 272, 784
BbvI GCAGC 4 cut(s) 659, 698, 821, 1006
BccI CCATC 4 cut(s) 31, 228, 318, 540
BciT130I CCWGG 3 cut(s) 127, 438, 662
BclI TGATCA 1 cut(s) 1051
BcnI CCSGG 1 cut(s) 507
BcoDI GTCTC 3 cut(s) 66, 229, 1039
BfaI CTAG 1 cut(s) 741
BfmI CTRYAG 7 cut(s) 150, 229, 684, 795, 861, 937, 963
BfoI RGCGCY 1 cut(s) 170
BfrI CTTAAG 1 cut(s) 350
BfuAI ACCTGC 1 cut(s) 802
BisI GCNGC 4 cut(s) 648, 687, 810, 995
BlsI GCNGC 4 cut(s) 649, 688, 811, 996
Bme1390I CCNGG 4 cut(s) 127, 438, 507, 662
Bme18I GGWCC 2 cut(s) 85, 723
BmgBI CACGTC 1 cut(s) 75
BmgT120I GGNCC 3 cut(s) 85, 669, 723
BmiI GGNNCC 3 cut(s) 274, 724, 786
BmrFI CCNGG 4 cut(s) 127, 438, 507, 662
BmsI GCATC 2 cut(s) 355, 611
BoxI GACNNNNGTC 1 cut(s) 44
BpmI CTGGAG 1 cut(s) 1124
Bpu10I CCTNAGC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 1031
BpuMI CCSGG 1 cut(s) 507
BsaI GGTCTC 2 cut(s) 66, 229
BsaJI CCNNGG 2 cut(s) 411, 660
BsaWI WCCGGW 1 cut(s) 269
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 234, 666, 667
Bse1I ACTGG 2 cut(s) 371, 547
Bse21I CCTNAGG 1 cut(s) 219
BseBI CCWGG 3 cut(s) 127, 438, 662
BseDI CCNNGG 2 cut(s) 411, 660
BseGI GGATG 4 cut(s) 329, 551, 626, 763
BseLI CCNNNNNNNGG 4 cut(s) 112, 234, 666, 667
BseMII CTCAG 4 cut(s) 210, 237, 795, 1109
BseNI ACTGG 2 cut(s) 371, 547
BseXI GCAGC 4 cut(s) 659, 698, 821, 1006
BseYI CCCAGC 1 cut(s) 319
BshFI GGCC 2 cut(s) 130, 671
BshNI GGYRCC 2 cut(s) 272, 784
BsiSI CCGG 2 cut(s) 270, 506
BslFI GGGAC 2 cut(s) 200, 736
BslI CCNNNNNNNGG 4 cut(s) 112, 234, 666, 667
BsmAI GTCTC 3 cut(s) 66, 229, 1039
BsmFI GGGAC 2 cut(s) 200, 736
BsnI GGCC 2 cut(s) 130, 671
Bso31I GGTCTC 2 cut(s) 66, 229
Bsp143I GATC 3 cut(s) 592, 968, 1051
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 2 cut(s) 923, 997
BspANI GGCC 2 cut(s) 130, 671
BspCNI CTCAG 4 cut(s) 211, 238, 796, 1108
BspLI GGNNCC 3 cut(s) 274, 724, 786
BspMAI CTGCAG 4 cut(s) 154, 688, 799, 967
BspMI ACCTGC 1 cut(s) 802
BspPI GGATC 2 cut(s) 587, 976
BspQI GCTCTTC 2 cut(s) 447, 495
BspT107I GGYRCC 2 cut(s) 272, 784
BspTI CTTAAG 1 cut(s) 350
BspTNI GGTCTC 2 cut(s) 66, 229
BsrI ACTGG 2 cut(s) 371, 547
BssECI CCNNGG 2 cut(s) 411, 660
BssMI GATC 3 cut(s) 592, 968, 1051
BssNAI GTATAC 2 cut(s) 372, 1080
BssT1I CCWWGG 1 cut(s) 411
Bst1107I GTATAC 2 cut(s) 372, 1080
Bst2UI CCWGG 3 cut(s) 127, 438, 662
Bst4CI ACNGT 4 cut(s) 307, 865, 900, 1112
Bst6I CTCTTC 4 cut(s) 69, 447, 495, 578
BstAFI CTTAAG 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 1024, 1119
BstDEI CTNAG 4 cut(s) 219, 246, 804, 1095
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 4 cut(s) 329, 551, 626, 763
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 3 cut(s) 595, 971, 1054
BstMAI GTCTC 3 cut(s) 66, 229, 1039
BstMBI GATC 3 cut(s) 592, 968, 1051
BstNI CCWGG 3 cut(s) 127, 438, 662
BstPAI GACNNNNGTC 1 cut(s) 44
BstSCI CCNGG 4 cut(s) 125, 436, 505, 660
BstSFI CTRYAG 7 cut(s) 150, 229, 684, 795, 861, 937, 963
BstV1I GCAGC 4 cut(s) 659, 698, 821, 1006
BstX2I RGATCY 1 cut(s) 968
BstXI CCANNNNNNTGG 1 cut(s) 440
BstYI RGATCY 1 cut(s) 968
BstZ17I GTATAC 2 cut(s) 372, 1080
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 2 cut(s) 130, 671
BtgI CCRYGG 1 cut(s) 411
BtrI CACGTC 1 cut(s) 75
BtsCI GGATG 4 cut(s) 329, 551, 626, 763
BtsIMutI CAGTG 2 cut(s) 540, 870
BveI ACCTGC 1 cut(s) 802
Cac8I GCNNGC 2 cut(s) 1024, 1119
CaiI CAGNNNCTG 5 cut(s) 653, 803, 971, 1075, 1102
CfoI GCGC 1 cut(s) 169
Cfr13I GGNCC 3 cut(s) 85, 669, 723
CseI GACGC 1 cut(s) 746
Csp6I GTAC 1 cut(s) 273
CspCI CAANNNNNGTGG 2 cut(s) 625, 660
CviAII CATG 5 cut(s) 89, 191, 412, 754, 1046
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 4 cut(s) 219, 246, 804, 1095
DpnI GATC 3 cut(s) 594, 970, 1053
DpnII GATC 3 cut(s) 592, 968, 1051
DrdI GACNNNNNNGTC 1 cut(s) 662
DseDI GACNNNNNNGTC 1 cut(s) 662
Eam1104I CTCTTC 4 cut(s) 69, 447, 495, 578
EarI CTCTTC 4 cut(s) 69, 447, 495, 578
Eco130I CCWWGG 1 cut(s) 411
Eco31I GGTCTC 2 cut(s) 66, 229
Eco47I GGWCC 2 cut(s) 85, 723
Eco81I CCTNAGG 1 cut(s) 219
EcoRII CCWGG 3 cut(s) 125, 436, 660
EcoT14I CCWWGG 1 cut(s) 411
EcoT22I ATGCAT 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 5 cut(s) 92, 194, 415, 757, 1049
FaqI GGGAC 2 cut(s) 200, 736
FatI CATG 5 cut(s) 88, 190, 411, 753, 1045
FbaI TGATCA 1 cut(s) 1051
FblI GTMKAC 3 cut(s) 371, 735, 1079
Fnu4HI GCNGC 4 cut(s) 648, 687, 810, 995
FokI GGATG 4 cut(s) 336, 558, 633, 770
Fsp4HI GCNGC 4 cut(s) 648, 687, 810, 995
FspBI CTAG 1 cut(s) 741
GlaI GCGC 1 cut(s) 168
GluI GCNGC 4 cut(s) 648, 687, 810, 995
GsaI CCCAGC 1 cut(s) 323
GsuI CTGGAG 1 cut(s) 1124
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 2 cut(s) 130, 671
HapII CCGG 2 cut(s) 270, 506
HgaI GACGC 1 cut(s) 746
HhaI GCGC 1 cut(s) 169
Hin1II CATG 5 cut(s) 92, 194, 415, 757, 1049
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HincII GTYRAC 1 cut(s) 552
HindII GTYRAC 1 cut(s) 552
HinfI GANTC 6 cut(s) 613, 632, 746, 853, 954, 977
HpaII CCGG 2 cut(s) 270, 506
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 5 cut(s) 372, 552, 736, 868, 1080
Hpy188I TCNGA 6 cut(s) 98, 115, 280, 696, 883, 1061
Hpy188III TCNNGA 5 cut(s) 14, 245, 580, 1036, 1103
Hpy8I GTNNAC 5 cut(s) 372, 552, 736, 868, 1080
HpyAV CCTTC 1 cut(s) 606
HpyCH4III ACNGT 4 cut(s) 307, 865, 900, 1112
HpyCH4IV ACGT 2 cut(s) 74, 554
HpyCH4V TGCA 8 cut(s) 152, 257, 647, 686, 797, 965, 1026, 1128
HpyF3I CTNAG 4 cut(s) 219, 246, 804, 1095
HpySE526I ACGT 2 cut(s) 74, 554
Hsp92II CATG 5 cut(s) 92, 194, 415, 757, 1049
HspAI GCGC 1 cut(s) 167
KpnI GGTACC 1 cut(s) 276
Ksp22I TGATCA 1 cut(s) 1051
Kzo9I GATC 3 cut(s) 592, 968, 1051
LguI GCTCTTC 2 cut(s) 447, 495
LmnI GCTCC 2 cut(s) 115, 332
Lsp1109I GCAGC 4 cut(s) 659, 698, 821, 1006
LweI GCATC 2 cut(s) 355, 611
MaeI CTAG 1 cut(s) 741
MaeII ACGT 2 cut(s) 74, 554
MaeIII GTNAC 6 cut(s) 37, 46, 75, 119, 472, 799
MalI GATC 3 cut(s) 594, 970, 1053
MboI GATC 3 cut(s) 592, 968, 1051
MboII GAAGA 6 cut(s) 56, 464, 509, 512, 595, 848
MflI RGATCY 1 cut(s) 968
MluCI AATT 2 cut(s) 420, 926
MlyI GAGTC 3 cut(s) 755, 963, 986
MmeI TCCRAC 2 cut(s) 121, 549
Mph1103I ATGCAT 1 cut(s) 259
MseI TTAA 3 cut(s) 351, 426, 1141
MslI CAYNNNNRTG 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 997
MspCI CTTAAG 1 cut(s) 350
MspI CCGG 2 cut(s) 270, 506
MspR9I CCNGG 4 cut(s) 127, 438, 507, 662
MvaI CCWGG 3 cut(s) 127, 438, 662
NciI CCSGG 1 cut(s) 507
NcoI CCATGG 1 cut(s) 411
NdeII GATC 3 cut(s) 592, 968, 1051
NlaIII CATG 5 cut(s) 92, 194, 415, 757, 1049
NlaIV GGNNCC 3 cut(s) 274, 724, 786
NmeAIII GCCGAG 1 cut(s) 923
NmuCI GTSAC 4 cut(s) 37, 46, 75, 119
NsiI ATGCAT 1 cut(s) 259
PciSI GCTCTTC 2 cut(s) 447, 495
PfeI GAWTC 3 cut(s) 613, 632, 853
PflFI GACNNNGTC 1 cut(s) 953
PkrI GCNGC 4 cut(s) 649, 688, 811, 996
PleI GAGTC 3 cut(s) 754, 962, 985
PpsI GAGTC 3 cut(s) 754, 962, 985
PshAI GACNNNNGTC 1 cut(s) 44
PsiI TTATAA 1 cut(s) 186
Psp6I CCWGG 3 cut(s) 125, 436, 660
PspFI CCCAGC 1 cut(s) 319
PspGI CCWGG 3 cut(s) 125, 436, 660
PspN4I GGNNCC 3 cut(s) 274, 724, 786
PspPI GGNCC 3 cut(s) 85, 669, 723
PstI CTGCAG 4 cut(s) 154, 688, 799, 967
PstNI CAGNNNCTG 5 cut(s) 653, 803, 971, 1075, 1102
PsuI RGATCY 1 cut(s) 968
PsyI GACNNNGTC 1 cut(s) 953
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
RseI CAYNNNNRTG 1 cut(s) 53
SapI GCTCTTC 2 cut(s) 447, 495
SaqAI TTAA 3 cut(s) 351, 426, 1141
SatI GCNGC 4 cut(s) 648, 687, 810, 995
Sau3AI GATC 3 cut(s) 592, 968, 1051
Sau96I GGNCC 3 cut(s) 85, 669, 723
SbfI CCTGCAGG 1 cut(s) 967
SchI GAGTC 3 cut(s) 755, 963, 986
ScrFI CCNGG 4 cut(s) 127, 438, 507, 662
SdaI CCTGCAGG 1 cut(s) 967
SfaNI GCATC 2 cut(s) 355, 611
SfcI CTRYAG 7 cut(s) 150, 229, 684, 795, 861, 937, 963
SinI GGWCC 2 cut(s) 85, 723
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 350, 1010
SmoI CTYRAG 2 cut(s) 350, 1010
Sse8387I CCTGCAGG 1 cut(s) 967
Sse9I AATT 2 cut(s) 420, 926
SsiI CCGC 2 cut(s) 923, 997
SspMI CTAG 1 cut(s) 741
StyD4I CCNGG 4 cut(s) 125, 436, 505, 660
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 4 cut(s) 307, 865, 900, 1112
TaiI ACGT 2 cut(s) 77, 557
TaqI TCGA 2 cut(s) 26, 1037
TasI AATT 2 cut(s) 420, 926
TfiI GAWTC 3 cut(s) 613, 632, 853
Tru1I TTAA 3 cut(s) 351, 426, 1141
Tru9I TTAA 3 cut(s) 351, 426, 1141
TscAI CASTG 2 cut(s) 547, 870
TseFI GTSAC 4 cut(s) 37, 46, 75, 119
TseI GCWGC 4 cut(s) 647, 686, 809, 994
Tsp45I GTSAC 4 cut(s) 37, 46, 75, 119
TspDTI ATGAA 3 cut(s) 276, 515, 973
TspGWI ACGGA 1 cut(s) 202
TspRI CASTG 2 cut(s) 547, 870
Tth111I GACNNNGTC 1 cut(s) 953
Vha464I CTTAAG 1 cut(s) 350
VpaK11BI GGWCC 2 cut(s) 85, 723
XapI RAATTY 1 cut(s) 420
XmiI GTMKAC 3 cut(s) 371, 735, 1079
XspI CTAG 1 cut(s) 741
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.