AT3G19970

Eukaryotic protein of unknown function (DUF829)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002622
Physical Location & Seq
Forward (+)
6958509 .. 6961684
3176 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19970.1

Sequence Viewer

Length: 1305 bp
ATGGGTTCTTTGTCTGGGATCATTCAACGGCCACTTGTTGCTGCTGCTGCTGTGATTACAGCTTCTGTGTCTGCAGATGTCTCTGAGAGGTTCTCATCTCTTAGATCACTAGTTCGAGGTTCTGAATCAGAGCAGATTGCTCCTTCAGTGTCTGGTTTAGTTCAGGAAGAAAGGTCCTTGTGGGTTTCTCAAGTCTCGGCCTCCAAGCTTGCAGATTTATCTTTTGTGTCGAGGATTTGTGTTCCTGTACCAAATGTTGATCTCCTAGCTTCTAATCCTAGCTGTAGTCTCGCTACTTCTGTTACTTCTCTGTCCGCTCTTCGTAGTGTTTATCAGTCTGCAGAGTTGGCTAAAGCATCGAAACCGGTTGCATTCACAATCGGTGCCTCACTTGTGGTTCCTGATATTTCCTACAGATGGCATTTACCTGAGCCTAGTGCAGTCGATATGTCTGGTTCTTCGAGTTGTGTGTCTGAAAAGAATAGAACTGTTGTGGTTTTGCTTGGATGGCTTGGATCAAAGCAGAAGCATCTGAAGAAATATGCTGATTGGTACACTTCAAAGGGTTACCATGTCATTACATTTACTCTTCCGATGAATGAGATTATGAGTTATCAAGTTGGAGGGAAAGCAGAGAAGAACATCGAGTCGCTGGTTAATCACTTGGCTGATTGGTTGGATGAAGAGCAAAAGAAAAATCTCGTCTTTCACACCTTCAGCAACACCGGGTGGTTAACATATGGAGCCATTTTGGAAAAGTTTCAGAAGCAAGATTCATCATTGATGGGAAGAGTTAAAGGTTGCATAGTGGACTCAGCTCCTGTTGCTGCTGCAGATCCTACGGTATGGGCATCAGGTTTCTCAGCTGCGTTCTTGAAGAAAAGCAGTGTAGCCACTAAAGGATCTGCGAGCTCATCATATGAGTCAAACGGTATAAACATCTCCCAGCCTAAACCCGCTGCAACAGAAACAGCTTTGCTTTTGGTTCTTGAAAAGTTCTTTGCGGTGATTCTAAATCTTCCCAAAGTAAACAGGAGACTTGCCGATGTTCTTGACACATTATCAACAGCACAACCAAGTTGTCCACAGTTATACATTTACAGCTCTGCAGACAGAGTTATACCGGTGGAACAAGTTGAATCATTCATTGTAGAGCAGAGGAAAGCAGGACATGAGGTCCGTGCTTGCAACTTCATATCTTCACCTCATGTAGACCATTTCCGGAGTAACCCAGAACTGTATACAGCTGAGCTCAACCATTTCATGAACAACTTTGTCCTTTCTTGCTGCCACCATTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF829

Protein Analysis

434

Amino Acids

47.1

Weight (kDa)

7.62

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF829 PF05705 163 - 422 4.4e-77 Eukaryotic protein of unknown function (DUF829)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 383
AccBSI CCGCTC 1 cut(s) 317
AccI GTMKAC 2 cut(s) 1212, 1241
AccIII TCCGGA 1 cut(s) 1221
AciI CCGC 3 cut(s) 315, 957, 1004
AclWI GGATC 4 cut(s) 26, 523, 830, 910
AcoI YGGCCR 1 cut(s) 29
AcuI CTGAAG 3 cut(s) 129, 554, 700
AdeI CACNNNGTG 1 cut(s) 729
AfaI GTAC 2 cut(s) 249, 554
AfiI CCNNNNNNNGG 1 cut(s) 417
AgeI ACCGGT 2 cut(s) 364, 1123
AgsI TTSAA 5 cut(s) 26, 561, 877, 992, 1139
AhdI GACNNNNNGTC 1 cut(s) 1175
AhlI ACTAGT 1 cut(s) 109
Alw21I GWGCWC 2 cut(s) 914, 1254
Alw26I GTCTC 4 cut(s) 85, 199, 293, 1030
AlwI GGATC 4 cut(s) 26, 523, 830, 910
AlwNI CAGNNNCTG 3 cut(s) 65, 152, 821
Aor13HI TCCGGA 1 cut(s) 1221
AoxI GGCC 2 cut(s) 29, 198
ApeKI GCWGC 8 cut(s) 41, 44, 47, 827, 830, 866, 959, 1287
AsiGI ACCGGT 2 cut(s) 364, 1123
Asp700I GAANNNNTTC 1 cut(s) 759
AspS9I GGNCC 2 cut(s) 174, 1177
AsuC2I CCSGG 1 cut(s) 727
AsuHPI GGTGA 2 cut(s) 1018, 1194
AvaII GGWCC 2 cut(s) 174, 1177
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 2 cut(s) 914, 1254
Bbv12I GWGCWC 2 cut(s) 914, 1254
BbvI GCAGC 8 cut(s) 28, 31, 34, 814, 817, 853, 946, 1274
BccI CCATC 3 cut(s) 411, 501, 778
BceAI ACGGC 1 cut(s) 44
BcnI CCSGG 1 cut(s) 727
BcoDI GTCTC 4 cut(s) 85, 199, 293, 1030
BcuI ACTAGT 1 cut(s) 109
BfaI CTAG 4 cut(s) 110, 266, 279, 435
BfmI CTRYAG 6 cut(s) 72, 283, 339, 412, 831, 1107
BisI GCNGC 8 cut(s) 42, 45, 48, 828, 831, 867, 960, 1288
BlpI GCTNAGC 1 cut(s) 1248
BlsI GCNGC 8 cut(s) 43, 46, 49, 829, 832, 868, 961, 1289
Bme1390I CCNGG 1 cut(s) 727
Bme18I GGWCC 2 cut(s) 174, 1177
BmeRI GACNNNNNGTC 1 cut(s) 1175
BmgT120I GGNCC 2 cut(s) 174, 1177
BmiI GGNNCC 3 cut(s) 385, 399, 745
BmrFI CCNGG 1 cut(s) 727
BmsI GCATC 3 cut(s) 365, 538, 860
BplI GAGNNNNNCTC 2 cut(s) 77, 109
Bpu10I CCTNAGC 1 cut(s) 429
Bpu1102I GCTNAGC 1 cut(s) 1248
BpuEI CTTGAG 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 727
BsaWI WCCGGW 3 cut(s) 364, 1123, 1221
Bsc4I CCNNNNNNNGG 1 cut(s) 417
Bse118I RCCGGY 2 cut(s) 364, 1123
BseAI TCCGGA 1 cut(s) 1221
BseGI GGATG 2 cut(s) 512, 685
BseLI CCNNNNNNNGG 1 cut(s) 417
BseMII CTCAG 5 cut(s) 75, 420, 828, 876, 1239
BseXI GCAGC 8 cut(s) 28, 31, 34, 814, 817, 853, 946, 1274
BseYI CCCAGC 1 cut(s) 945
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 2 cut(s) 31, 200
BshNI GGYRCC 1 cut(s) 383
BshTI ACCGGT 2 cut(s) 364, 1123
BsiHKAI GWGCWC 2 cut(s) 914, 1254
BsiSI CCGG 4 cut(s) 365, 726, 1124, 1222
BslI CCNNNNNNNGG 1 cut(s) 417
BsmAI GTCTC 4 cut(s) 85, 199, 293, 1030
BsmI GAATGC 1 cut(s) 371
BsnI GGCC 2 cut(s) 31, 200
Bsp1286I GDGCHC 2 cut(s) 914, 1254
Bsp13I TCCGGA 1 cut(s) 1221
Bsp143I GATC 6 cut(s) 18, 104, 259, 515, 835, 902
Bsp1720I GCTNAGC 1 cut(s) 1248
BspACI CCGC 3 cut(s) 315, 957, 1004
BspANI GGCC 2 cut(s) 31, 200
BspCNI CTCAG 5 cut(s) 76, 421, 827, 875, 1240
BspEI TCCGGA 1 cut(s) 1221
BspHI TCATGA 1 cut(s) 1263
BspLI GGNNCC 3 cut(s) 385, 399, 745
BspMAI CTGCAG 4 cut(s) 76, 343, 835, 1111
BspPI GGATC 4 cut(s) 26, 523, 830, 910
BspQI GCTCTTC 2 cut(s) 324, 678
BspT107I GGYRCC 1 cut(s) 383
BsrBI CCGCTC 1 cut(s) 317
BsrFI RCCGGY 2 cut(s) 364, 1123
BssAI RCCGGY 2 cut(s) 364, 1123
BssMI GATC 6 cut(s) 18, 104, 259, 515, 835, 902
BssNAI GTATAC 1 cut(s) 1242
Bst1107I GTATAC 1 cut(s) 1242
Bst4CI ACNGT 5 cut(s) 490, 844, 932, 1089, 1239
Bst6I CTCTTC 4 cut(s) 324, 594, 678, 784
BstC8I GCNNGC 3 cut(s) 210, 910, 1186
BstDEI CTNAG 6 cut(s) 84, 101, 429, 814, 862, 1248
BstEII GGTNACC 1 cut(s) 566
BstF5I GGATG 2 cut(s) 512, 685
BstKTI GATC 6 cut(s) 21, 107, 262, 518, 838, 905
BstMAI GTCTC 4 cut(s) 85, 199, 293, 1030
BstMBI GATC 6 cut(s) 18, 104, 259, 515, 835, 902
BstMWI GCNNNNNNNGC 4 cut(s) 47, 347, 508, 824
BstPI GGTNACC 1 cut(s) 566
BstSCI CCNGG 1 cut(s) 725
BstSFI CTRYAG 6 cut(s) 72, 283, 339, 412, 831, 1107
BstV1I GCAGC 8 cut(s) 28, 31, 34, 814, 817, 853, 946, 1274
BstX2I RGATCY 2 cut(s) 835, 902
BstYI RGATCY 2 cut(s) 835, 902
BstZ17I GTATAC 1 cut(s) 1242
BsuRI GGCC 2 cut(s) 31, 200
BtsCI GGATG 2 cut(s) 512, 685
BtsI GCAGTG 1 cut(s) 892
BtsIMutI CAGTG 2 cut(s) 153, 892
Cac8I GCNNGC 3 cut(s) 210, 910, 1186
CaiI CAGNNNCTG 3 cut(s) 65, 152, 821
CciI TCATGA 1 cut(s) 1263
Cfr10I RCCGGY 2 cut(s) 364, 1123
Cfr13I GGNCC 2 cut(s) 174, 1177
Csp6I GTAC 2 cut(s) 248, 553
CspAI ACCGGT 2 cut(s) 364, 1123
CviAII CATG 4 cut(s) 572, 1172, 1208, 1264
CviQI GTAC 2 cut(s) 248, 553
DdeI CTNAG 6 cut(s) 84, 101, 429, 814, 862, 1248
DpnI GATC 6 cut(s) 20, 106, 261, 517, 837, 904
DpnII GATC 6 cut(s) 18, 104, 259, 515, 835, 902
DraIII CACNNNGTG 1 cut(s) 729
DriI GACNNNNNGTC 1 cut(s) 1175
EaeI YGGCCR 1 cut(s) 29
Eam1104I CTCTTC 4 cut(s) 324, 594, 678, 784
Eam1105I GACNNNNNGTC 1 cut(s) 1175
EarI CTCTTC 4 cut(s) 324, 594, 678, 784
Ecl136II GAGCTC 2 cut(s) 912, 1252
Eco24I GRGCYC 2 cut(s) 914, 1254
Eco47I GGWCC 2 cut(s) 174, 1177
Eco53kI GAGCTC 2 cut(s) 912, 1252
Eco57I CTGAAG 3 cut(s) 129, 554, 700
Eco91I GGTNACC 1 cut(s) 566
EcoICRI GAGCTC 2 cut(s) 912, 1252
EcoO109I RGGNCCY 1 cut(s) 174
EcoO65I GGTNACC 1 cut(s) 566
EcoT38I GRGCYC 2 cut(s) 914, 1254
FaeI CATG 4 cut(s) 575, 1175, 1211, 1267
FatI CATG 4 cut(s) 571, 1171, 1207, 1263
FauI CCCGC 1 cut(s) 964
FauNDI CATATG 2 cut(s) 739, 919
FblI GTMKAC 2 cut(s) 1212, 1241
Fnu4HI GCNGC 8 cut(s) 42, 45, 48, 828, 831, 867, 960, 1288
FokI GGATG 2 cut(s) 519, 692
FriOI GRGCYC 2 cut(s) 914, 1254
Fsp4HI GCNGC 8 cut(s) 42, 45, 48, 828, 831, 867, 960, 1288
FspBI CTAG 4 cut(s) 110, 266, 279, 435
GluI GCNGC 8 cut(s) 42, 45, 48, 828, 831, 867, 960, 1288
GsaI CCCAGC 1 cut(s) 949
HaeIII GGCC 2 cut(s) 31, 200
HapII CCGG 4 cut(s) 365, 726, 1124, 1222
Hin1II CATG 4 cut(s) 575, 1175, 1211, 1267
HincII GTYRAC 1 cut(s) 735
HindII GTYRAC 1 cut(s) 735
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 7 cut(s) 125, 647, 773, 812, 923, 1009, 1139
HpaI GTTAAC 1 cut(s) 735
HpaII CCGG 4 cut(s) 365, 726, 1124, 1222
HphI GGTGA 2 cut(s) 1018, 1194
Hpy166II GTNNAC 7 cut(s) 555, 735, 811, 1030, 1085, 1213, 1242
Hpy188I TCNGA 7 cut(s) 85, 124, 130, 475, 534, 594, 765
Hpy188III TCNNGA 7 cut(s) 164, 401, 874, 989, 1052, 1222, 1264
Hpy8I GTNNAC 7 cut(s) 555, 735, 811, 1030, 1085, 1213, 1242
HpyAV CCTTC 2 cut(s) 153, 724
HpyCH4III ACNGT 5 cut(s) 490, 844, 932, 1089, 1239
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 347, 508, 824
HpyF3I CTNAG 6 cut(s) 84, 101, 429, 814, 862, 1248
Hsp92II CATG 4 cut(s) 575, 1175, 1211, 1267
Kpn2I TCCGGA 1 cut(s) 1221
KspAI GTTAAC 1 cut(s) 735
Kzo9I GATC 6 cut(s) 18, 104, 259, 515, 835, 902
LguI GCTCTTC 2 cut(s) 324, 678
LmnI GCTCC 3 cut(s) 145, 743, 823
Lsp1109I GCAGC 8 cut(s) 28, 31, 34, 814, 817, 853, 946, 1274
LweI GCATC 3 cut(s) 365, 538, 860
MaeI CTAG 4 cut(s) 110, 266, 279, 435
MaeIII GTNAC 3 cut(s) 301, 566, 1226
MalI GATC 6 cut(s) 20, 106, 261, 517, 837, 904
MbiI CCGCTC 1 cut(s) 317
MboI GATC 6 cut(s) 18, 104, 259, 515, 835, 902
MflI RGATCY 2 cut(s) 835, 902
MhlI GDGCHC 2 cut(s) 914, 1254
MlyI GAGTC 3 cut(s) 656, 806, 932
MmeI TCCRAC 2 cut(s) 601, 657
MnlI CCTC 9 cut(s) 81, 110, 211, 225, 397, 617, 1152, 1168, 1215
MroI TCCGGA 1 cut(s) 1221
MroXI GAANNNNTTC 1 cut(s) 759
MseI TTAA 3 cut(s) 657, 734, 795
MspA1I CMGCKG 3 cut(s) 866, 959, 1247
MspI CCGG 4 cut(s) 365, 726, 1124, 1222
MspR9I CCNGG 1 cut(s) 727
Mva1269I GAATGC 1 cut(s) 371
MwoI GCNNNNNNNGC 4 cut(s) 47, 347, 508, 824
NciI CCSGG 1 cut(s) 727
NdeI CATATG 2 cut(s) 739, 919
NdeII GATC 6 cut(s) 18, 104, 259, 515, 835, 902
NlaIII CATG 4 cut(s) 575, 1175, 1211, 1267
NlaIV GGNNCC 3 cut(s) 385, 399, 745
NmeAIII GCCGAG 1 cut(s) 176
PagI TCATGA 1 cut(s) 1263
PciSI GCTCTTC 2 cut(s) 324, 678
PctI GAATGC 1 cut(s) 371
PdmI GAANNNNTTC 1 cut(s) 759
PfeI GAWTC 4 cut(s) 125, 773, 1009, 1139
PinAI ACCGGT 2 cut(s) 364, 1123
PkrI GCNGC 8 cut(s) 43, 46, 49, 829, 832, 868, 961, 1289
PleI GAGTC 3 cut(s) 655, 806, 931
PpsI GAGTC 3 cut(s) 655, 806, 931
PpuMI RGGWCCY 1 cut(s) 174
Psp124BI GAGCTC 2 cut(s) 914, 1254
Psp5II RGGWCCY 1 cut(s) 174
PspEI GGTNACC 1 cut(s) 566
PspFI CCCAGC 1 cut(s) 945
PspN4I GGNNCC 3 cut(s) 385, 399, 745
PspPI GGNCC 2 cut(s) 174, 1177
PspPPI RGGWCCY 1 cut(s) 174
PstI CTGCAG 4 cut(s) 76, 343, 835, 1111
PstNI CAGNNNCTG 3 cut(s) 65, 152, 821
PsuI RGATCY 2 cut(s) 835, 902
PvuII CAGCTG 2 cut(s) 866, 1247
RsaI GTAC 2 cut(s) 249, 554
RsaNI GTAC 2 cut(s) 248, 553
SacI GAGCTC 2 cut(s) 914, 1254
SapI GCTCTTC 2 cut(s) 324, 678
SaqAI TTAA 3 cut(s) 657, 734, 795
SatI GCNGC 8 cut(s) 42, 45, 48, 828, 831, 867, 960, 1288
Sau3AI GATC 6 cut(s) 18, 104, 259, 515, 835, 902
Sau96I GGNCC 2 cut(s) 174, 1177
SchI GAGTC 3 cut(s) 656, 806, 932
ScrFI CCNGG 1 cut(s) 727
SduI GDGCHC 2 cut(s) 914, 1254
SfaNI GCATC 3 cut(s) 365, 538, 860
SfcI CTRYAG 6 cut(s) 72, 283, 339, 412, 831, 1107
SinI GGWCC 2 cut(s) 174, 1177
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
SpeI ACTAGT 1 cut(s) 109
SsiI CCGC 3 cut(s) 315, 957, 1004
SspMI CTAG 4 cut(s) 110, 266, 279, 435
SstI GAGCTC 2 cut(s) 914, 1254
StyD4I CCNGG 1 cut(s) 725
TaaI ACNGT 5 cut(s) 490, 844, 932, 1089, 1239
TaqI TCGA 6 cut(s) 115, 230, 359, 444, 461, 645
TfiI GAWTC 4 cut(s) 125, 773, 1009, 1139
Tru1I TTAA 3 cut(s) 657, 734, 795
Tru9I TTAA 3 cut(s) 657, 734, 795
TscAI CASTG 2 cut(s) 153, 892
TseI GCWGC 8 cut(s) 41, 44, 47, 827, 830, 866, 959, 1287
TspDTI ATGAA 8 cut(s) 611, 696, 765, 1135, 1183, 1252, 1280, 1290
TspGWI ACGGA 1 cut(s) 1169
TspRI CASTG 2 cut(s) 153, 892
VpaK11BI GGWCC 2 cut(s) 174, 1177
XmiI GTMKAC 2 cut(s) 1212, 1241
XmnI GAANNNNTTC 1 cut(s) 759
XspI CTAG 4 cut(s) 110, 266, 279, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.