Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8345695.1

Orthogroup ID

OG0002622

Physical Location & Seq

Genomic Coordinates Reverse (-)

169 .. 933

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8345695.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atggatgctttggttgacagcaaggaagtagtggcacccaaacctgcagtaactgaggcagctttgcttttagttttggagaagttctttgaggtggttttgaatcttcctacagtgaacaggaggctttctgatgttttgggcttactgtcagcacgacaaccaagctgtccgcaattatatatctacagctctgcagacagagtcattcctgcaggatctgtggagtcgttcataaaacaacagcggagggctggacatgaggttagggcttgcaactttgtctcgacacctcatgttgatcatttcagaaatgacccgaagctgtatacttctgagctaactcactttctggaggactgtgtgcttacttgttgcaaacagtctcgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF829

Protein Analysis

130

Amino Acids

14.56

Weight (kDa)

6.89

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19970 AT3G19970 AT3G19970 AT3G19970 AT3G19970
fragaria_vesca	FvH4_4g37150 FvH4_7g21480
malus_domestica	MD13G1003100.v1.1
prunus_persica	Prupe.1G349300_v2.0.a1
pyrus_communis	pycom13g00260 pycom16g00170
rosa_chinensis	RchiOBHm_Chr1g0365791 RchiOBHm_Chr4g0409441 RchiOBHm_Chr4g0446951
rosa_laevigata	RLG00000005618 RLG00000027396
rosa_multiflora	Rmu_co8345695.1_g000001 Rmu_sc0001753.1_g000006 Rmu_sc0002365.1_g000009 Rmu_sc0004311.1_g000013 Rmu_sc0011539.1_g000002 Rmu_sc0034955.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290870 Rroxscaffold_5G00387280
rosa_rugosa	Rorug01G0324300 Rorug03G0341000 Rorug03G0341000 Rorug04G0376500
rosa_samantha	Rh1AG333200 Rh1BG294100 Rh1CG310800 Rh1DG326500 Rh4AG437900 Rh4BG446800 Rh4CG464100 Rh4DG445600
rosa_wichuraiana	Rw0G014000 Rw1G006220 Rw1G029570 Rw4G037450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	52
AccB1I	GGYRCC	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	329
AciI	CCGC	2 cut(s)	173, 247
AclWI	GGATC	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	103
AluBI	AGCT	5 cut(s)	62, 168, 192, 325, 340
AluI	AGCT	5 cut(s)	62, 168, 192, 325, 340
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	1 cut(s)	226
AlwNI	CAGNNNCTG	2 cut(s)	53, 221
ApeKI	GCWGC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	71
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	289
BfmI	CTRYAG	5 cut(s)	45, 111, 187, 195, 213
BfuAI	ACCTGC	1 cut(s)	52
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	374
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	2 cut(s)	45, 327
BseXI	GCAGC	1 cut(s)	71
BshNI	GGYRCC	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	289
Bsp143I	GATC	2 cut(s)	218, 301
BspACI	CCGC	2 cut(s)	173, 247
BspCNI	CTCAG	2 cut(s)	46, 328
BspLI	GGNNCC	1 cut(s)	36
BspMAI	CTGCAG	3 cut(s)	49, 199, 217
BspMI	ACCTGC	1 cut(s)	52
BspPI	GGATC	1 cut(s)	226
BspT107I	GGYRCC	1 cut(s)	34
BssMI	GATC	2 cut(s)	218, 301
BssNAI	GTATAC	1 cut(s)	330
Bst1107I	GTATAC	1 cut(s)	330
Bst4CI	ACNGT	4 cut(s)	115, 150, 362, 384
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	2 cut(s)	54, 336
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	221, 304
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	2 cut(s)	218, 301
BstSFI	CTRYAG	5 cut(s)	45, 111, 187, 195, 213
BstV1I	GCAGC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BstZ17I	GTATAC	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	274
CaiI	CAGNNNCTG	2 cut(s)	53, 221
CviAII	CATG	2 cut(s)	260, 296
CviJI	RGCY	9 cut(s)	62, 127, 144, 168, 192, 254, 272, 325, 340
CviKI_1	RGCY	9 cut(s)	62, 127, 144, 168, 192, 254, 272, 325, 340
DdeI	CTNAG	2 cut(s)	54, 336
DpnI	GATC	2 cut(s)	220, 303
DpnII	GATC	2 cut(s)	218, 301
FaeI	CATG	2 cut(s)	263, 299
FaiI	YATR	6 cut(s)	181, 183, 236, 261, 297, 330
FatI	CATG	2 cut(s)	259, 295
FbaI	TGATCA	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	329
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	374
Hin1II	CATG	2 cut(s)	263, 299
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	3 cut(s)	103, 204, 227
Hpy166II	GTNNAC	3 cut(s)	16, 118, 330
Hpy188I	TCNGA	3 cut(s)	133, 311, 337
Hpy188III	TCNNGA	2 cut(s)	286, 353
Hpy8I	GTNNAC	3 cut(s)	16, 118, 330
HpyCH4III	ACNGT	4 cut(s)	115, 150, 362, 384
HpyCH4V	TGCA	5 cut(s)	47, 197, 215, 276, 378
HpyF3I	CTNAG	2 cut(s)	54, 336
Hsp92II	CATG	2 cut(s)	263, 299
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	218, 301
LpnPI	CCDG	6 cut(s)	57, 106, 201, 225, 240, 338
Lsp1109I	GCAGC	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	220, 303
MboI	GATC	2 cut(s)	218, 301
MboII	GAAGA	1 cut(s)	98
MflI	RGATCY	1 cut(s)	218
MluCI	AATT	1 cut(s)	176
MlyI	GAGTC	2 cut(s)	213, 236
MnlI	CCTC	7 cut(s)	49, 85, 117, 243, 256, 303, 349
MseI	TTAA	1 cut(s)	391
MspA1I	CMGCKG	1 cut(s)	247
NdeII	GATC	2 cut(s)	218, 301
NlaIII	CATG	2 cut(s)	263, 299
NlaIV	GGNNCC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	103
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	2 cut(s)	212, 235
PpsI	GAGTC	2 cut(s)	212, 235
PspN4I	GGNNCC	1 cut(s)	36
PstI	CTGCAG	3 cut(s)	49, 199, 217
PstNI	CAGNNNCTG	2 cut(s)	53, 221
PsuI	RGATCY	1 cut(s)	218
PsyI	GACNNNGTC	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	391
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	2 cut(s)	218, 301
SbfI	CCTGCAGG	1 cut(s)	217
SchI	GAGTC	2 cut(s)	213, 236
SdaI	CCTGCAGG	1 cut(s)	217
SetI	ASST	9 cut(s)	46, 64, 96, 170, 194, 267, 295, 327, 342
SfcI	CTRYAG	5 cut(s)	45, 111, 187, 195, 213
Sse8387I	CCTGCAGG	1 cut(s)	217
Sse9I	AATT	1 cut(s)	176
SsiI	CCGC	2 cut(s)	173, 247
TaaI	ACNGT	4 cut(s)	115, 150, 362, 384
TaqI	TCGA	1 cut(s)	287
TasI	AATT	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	391
Tru9I	TTAA	1 cut(s)	391
TscAI	CASTG	1 cut(s)	120
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	223
TspRI	CASTG	1 cut(s)	120
Tth111I	GACNNNGTC	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.